diff options
| -rw-r--r-- | wqflask/wqflask/static/new/javascript/dataset_menu_structure.json | 2297 |
1 files changed, 2004 insertions, 293 deletions
diff --git a/wqflask/wqflask/static/new/javascript/dataset_menu_structure.json b/wqflask/wqflask/static/new/javascript/dataset_menu_structure.json index f9bce083..4eb43144 100644 --- a/wqflask/wqflask/static/new/javascript/dataset_menu_structure.json +++ b/wqflask/wqflask/static/new/javascript/dataset_menu_structure.json @@ -277,6 +277,18 @@ ] }, "CANDLE": { + "Methylation": [ + [ + "423", + "CANDLE_Meth27_0313", + "CANDLE Newborn Cord ILM HumanMethylation27 (Mar13)*" + ], + [ + "422", + "CANDLE_Meth_0313", + "CANDLE Newborn Cord ILM HumanMethylation27 (Mar13) Z-Score*" + ] + ], "Newborn Cord Blood mRNA": [ [ "324", @@ -307,7 +319,7 @@ ] }, "GTEx": { - "Adipose tissue, subcutaneous mRNA": [ + "Adipose Tissue, Subcutaneous mRNA": [ [ "580", "GTEx_log2_Subcu_0314", @@ -319,7 +331,7 @@ "GTEx Human Subcutaneous (Apr14) RPKM" ] ], - "Adipose tissue, visceral mRNA": [ + "Adipose Tissue, Visceral mRNA": [ [ "587", "GTEx_log2_Visce_0314", @@ -873,14 +885,14 @@ ] }, "GTEx_v5": { - "Adipose tissue, subcutaneous mRNA": [ + "Adipose Tissue, Subcutaneous mRNA": [ [ "718", "GTEXv5_AdipSub_0915", "GTEXv5 Human Adipose Subcutaneous RefSeq (Sep15) RPKM log2" ] ], - "Adipose tissue, visceral mRNA": [ + "Adipose Tissue, Visceral mRNA": [ [ "719", "GTEXv5_AdiVis_0915", @@ -1252,6 +1264,603 @@ ] ] }, + "GTEx_v8": { + "Adipose Tissue, Subcutaneous mRNA": [ + [ + "950", + "GTEXv8_AdipSub_tpm_0220", + "GTEXv8 Human Adipose Subcutaneous RNA-Seq (Feb20) TPM log2" + ], + [ + "901", + "GTEXv8_AdipSub_0220", + "GTEXv8 Human Adipose Subcutaneous RNA-Seq (Feb20) log2" + ] + ], + "Adipose Tissue, Visceral mRNA": [ + [ + "951", + "GTEXv8_AdiVis_tpm_0220", + "GTEXv8 Human Adipose Visceral Omentum RNA-Seq (Feb20) TPM log2" + ], + [ + "902", + "GTEXv8_AdiVis_0220", + "GTEXv8 Human Adipose Visceral Omentum RNA-Seq (Feb20) log2" + ] + ], + "Adrenal Gland mRNA": [ + [ + "952", + "GTEXv8_AdrGla_tpm_0220", + "GTEXv8 Human Adrenal Gland RNA-Seq (Feb20) TPM log2" + ], + [ + "903", + "GTEXv8_AdrGla_0220", + "GTEXv8 Human Adrenal Gland RNA-Seq (Feb20) log2" + ] + ], + "Amygdala mRNA": [ + [ + "956", + "GTEXv8_Amy_tpm_0220", + "GTEXv8 Human Brain Amygdala RNA-Seq (Feb20) TPM log2" + ], + [ + "907", + "GTEXv8_Amy_0220", + "GTEXv8 Human Brain Amygdala RNA-Seq (Feb20) log2" + ] + ], + "Anterior Cingulate Cortex mRNA": [ + [ + "957", + "GTEXv8_AntCtx_tpm_0220", + "GTEXv8 Human Brain Anterior cingulate cortex BA24 RNA-Seq (Feb20) TPM log2" + ], + [ + "908", + "GTEXv8_AntCtx_0220", + "GTEXv8 Human Brain Anterior cingulate cortex BA24 RNA-Seq (Feb20) log2" + ] + ], + "Aorta mRNA": [ + [ + "953", + "GTEXv8_ArtAor_tpm_0220", + "GTEXv8 Human Artery Aorta RNA-Seq (Feb20) TPM log2" + ], + [ + "904", + "GTEXv8_ArtAor_0220", + "GTEXv8 Human Artery Aorta RNA-Seq (Feb20) log2" + ] + ], + "Breast - Mammary Tissue mRNA": [ + [ + "969", + "GTEXv8_BrMa_tpm_0220", + "GTEXv8 Human Breast Mammary Tissue RNA-Seq (Feb20) TPM log2" + ], + [ + "920", + "GTEXv8_BrMa_0220", + "GTEXv8 Human Breast Mammary Tissue RNA-Seq (Feb20) log2" + ] + ], + "Caudate mRNA": [ + [ + "958", + "GTEXv8_BrCa_tpm_0220", + "GTEXv8 Human Brain Caudate basal ganglia RNA-Seq (Feb20) TPM log2" + ], + [ + "909", + "GTEXv8_BrCa_0220", + "GTEXv8 Human Brain Caudate basal ganglia RNA-Seq (Feb20) log2" + ] + ], + "Cells - EBV-Transformed Lymphocytes mRNA": [ + [ + "970", + "GTEXv8_EBV_tpm_0220", + "GTEXv8 Human Cells-EBV-transformed lymphocytes RNA-Seq (Feb20) TPM log2" + ], + [ + "921", + "GTEXv8_EBV_0220", + "GTEXv8 Human Cells-EBV-transformed lymphocytes RNA-Seq (Feb20) log2" + ] + ], + "Cells - Transformed Fibroblasts mRNA": [ + [ + "971", + "GTEXv8_CTF_tpm_0220", + "GTEXv8 Human Cells-Transformed fibroblasts RNA-Seq (Feb20) TPM log2" + ], + [ + "922", + "GTEXv8_CTF_0220", + "GTEXv8 Human Cells-Transformed fibroblasts RNA-Seq (Feb20) log2" + ] + ], + "Cerebellar Cortex mRNA": [ + [ + "961", + "GTEXv8_BrCtx_tpm_0220", + "GTEXv8 Human Brain Cortex RNA-Seq (Feb20) TPM log2" + ], + [ + "912", + "GTEXv8_BrCtx_0220", + "GTEXv8 Human Brain Cortex RNA-Seq (Feb20) log2" + ] + ], + "Cerebellar Hemisphere mRNA": [ + [ + "959", + "GTEXv8_CerH_tpm_0220", + "GTEXv8 Human Brain Cerebellar Hemisphere RNA-Seq (Feb20) TPM log2" + ], + [ + "910", + "GTEXv8_CerH_0220", + "GTEXv8 Human Brain Cerebellar Hemisphere RNA-Seq (Feb20) log2" + ] + ], + "Cerebellum mRNA": [ + [ + "960", + "GTEXv8_BrCe_tpm_0220", + "GTEXv8 Human Brain Cerebellum RNA-Seq (Feb20) TPM log2" + ], + [ + "911", + "GTEXv8_BrCe_0220", + "GTEXv8 Human Brain Cerebellum RNA-Seq (Feb20) log2" + ] + ], + "Colon - Sigmoid mRNA": [ + [ + "972", + "GTEXv8_ColSig_tpm_0220", + "GTEXv8 Human Colon-Sigmoid RNA-Seq (Feb20) TPM log2" + ], + [ + "923", + "GTEXv8_ColSig_0220", + "GTEXv8 Human Colon-Sigmoid RNA-Seq (Feb20) log2" + ] + ], + "Colon - Transverse mRNA": [ + [ + "973", + "GTEXv8_ColTra_tpm_0220", + "GTEXv8 Human Colon-Transverse RNA-Seq (Feb20) TPM log2" + ], + [ + "924", + "GTEXv8_ColTra_0220", + "GTEXv8 Human Colon-Transverse RNA-Seq (Feb20) log2" + ] + ], + "Coronary mRNA": [ + [ + "954", + "GTEXv8_ArtCor_tpm_0220", + "GTEXv8 Human Artery Coronary RNA-Seq (Feb20) TPM log2" + ], + [ + "905", + "GTEXv8_ArtCor_0220", + "GTEXv8 Human Artery Coronary RNA-Seq (Feb20) log2" + ] + ], + "Esophagus - Gastroesophageal mRNA": [ + [ + "974", + "GTEXv8_GastJun_tpm_0220", + "GTEXv8 Human Esophagus - Gastroesophageal Junction RNA-Seq (Feb20) TPM log2" + ], + [ + "925", + "GTEXv8_GastJun_0220", + "GTEXv8 Human Esophagus - Gastroesophageal Junction RNA-Seq (Feb20) log2" + ] + ], + "Esophagus - Mucosa mRNA": [ + [ + "975", + "GTEXv8_EsoMu_tpm_0220", + "GTEXv8 Human Esophagus-Mucosa RNA-Seq (Feb20) TPM log2" + ], + [ + "926", + "GTEXv8_EsoMu_0220", + "GTEXv8 Human Esophagus-Mucosa RNA-Seq (Feb20) log2" + ] + ], + "Esophagus - Muscularis mRNA": [ + [ + "976", + "GTEXv8_EsoMus_tpm_0220", + "GTEXv8 Human Esophagus-Muscularis RNA-Seq (Feb20) TPM log2" + ], + [ + "927", + "GTEXv8_EsoMus_0220", + "GTEXv8 Human Esophagus-Muscularis RNA-Seq (Feb20) log2" + ] + ], + "Frontal Cortex mRNA": [ + [ + "962", + "GTEXv8_BrFr_tpm_0220", + "GTEXv8 Human Brain Frontal Cortex BA9 RNA-Seq (Feb20) TPM log2" + ], + [ + "913", + "GTEXv8_BrFr_0220", + "GTEXv8 Human Brain Frontal Cortex BA9 RNA-Seq (Feb20) log2" + ] + ], + "Heart - Atrial Appendage mRNA": [ + [ + "977", + "GTEXv8_HAA_tpm_0220", + "GTEXv8 Human Heart-Atrial Appendage RNA-Seq (Feb20) TPM log2" + ], + [ + "928", + "GTEXv8_HAA_0220", + "GTEXv8 Human Heart-Atrial Appendage RNA-Seq (Feb20) log2" + ] + ], + "Heart - Left Ventricle mRNA": [ + [ + "978", + "GTEXv8_LV_tpm_0220", + "GTEXv8 Human Heart-Left Ventricle RNA-Seq (Feb20) TPM log2" + ], + [ + "929", + "GTEXv8_LV_0220", + "GTEXv8 Human Heart-Left Ventricle RNA-Seq (Feb20) log2" + ] + ], + "Hippocampus mRNA": [ + [ + "963", + "GTEXv8_Hip_tpm_0220", + "GTEXv8 Human Brain Hippocampus RNA-Seq (Feb20) TPM log2" + ], + [ + "914", + "GTEXv8_Hip_0220", + "GTEXv8 Human Brain Hippocampus RNA-Seq (Feb20) log2" + ] + ], + "Hypothalamus mRNA": [ + [ + "964", + "GTEXv8_Hiptha_tpm_0220", + "GTEXv8 Human Brain Hypothalamus RNA-Seq (Feb20) TPM log2" + ], + [ + "915", + "GTEXv8_Hiptha_0220", + "GTEXv8 Human Brain Hypothalamus RNA-Seq (Feb20) log2" + ] + ], + "Kidney mRNA": [ + [ + "979", + "GTEXv8_Kidn_tpm_0220", + "GTEXv8 Human Kidney-Cortex RNA-Seq (Feb20) TPM log2" + ], + [ + "930", + "GTEXv8_Kidn_0220", + "GTEXv8 Human Kidney-Cortex RNA-Seq (Feb20) log2" + ] + ], + "Liver mRNA": [ + [ + "980", + "GTEXv8_Liv_tpm_0220", + "GTEXv8 Human Liver RNA-Seq (Feb20) TPM log2" + ], + [ + "931", + "GTEXv8_Liv_0220", + "GTEXv8 Human Liver RNA-Seq (Feb20) log2" + ] + ], + "Lung mRNA": [ + [ + "981", + "GTEXv8_Lung_tpm_0220", + "GTEXv8 Human Lung RNA-Seq (Feb20) TPM log2" + ], + [ + "932", + "GTEXv8_Lung_0220", + "GTEXv8 Human Lung RNA-Seq (Feb20) log2" + ] + ], + "Muscle mRNA": [ + [ + "982", + "GTEXv8_MuSk_tpm_0220", + "GTEXv8 Human Muscle-Skeletal RNA-Seq (Feb20) TPM log2" + ], + [ + "933", + "GTEXv8_MuSk_0220", + "GTEXv8 Human Muscle-Skeletal RNA-Seq (Feb20) log2" + ] + ], + "Nerve - Tibial mRNA": [ + [ + "983", + "GTEXv8_Tib_tpm_0220", + "GTEXv8 Human Nerve-Tibial RNA-Seq (Feb20) TPM log2" + ], + [ + "934", + "GTEXv8_Tib_0220", + "GTEXv8 Human Nerve-Tibial RNA-Seq (Feb20) log2" + ] + ], + "Nucleus Accumbens mRNA": [ + [ + "965", + "GTEXv8_NuAcc_tpm_0220", + "GTEXv8 Human Brain Nucleus accumbens basal ganglia RNA-Seq (Feb20) TPM log2" + ], + [ + "916", + "GTEXv8_NuAcc_0220", + "GTEXv8 Human Brain Nucleus accumbens basal ganglia RNA-Seq (Feb20) log2" + ] + ], + "Ovary mRNA": [ + [ + "984", + "GTEXv8_Ov_tpm_0220", + "GTEXv8 Human Ovary RNA-Seq (Feb20) TPM log2" + ], + [ + "935", + "GTEXv8_Ov_0220", + "GTEXv8 Human Ovary RNA-Seq (Feb20) log2" + ] + ], + "Pancreas mRNA": [ + [ + "985", + "GTEXv8_Panc_tpm_0220", + "GTEXv8 Human Pancreas RNA-Seq (Feb20) TPM log2" + ], + [ + "936", + "GTEXv8_Panc_0220", + "GTEXv8 Human Pancreas RNA-Seq (Feb20) log2" + ] + ], + "Phenotypes": [ + [ + "None", + "GTEx_v8Publish", + "GTEx_v8 Phenotypes" + ] + ], + "Pituitary Gland mRNA": [ + [ + "986", + "GTEXv8_Pit_tpm_0220", + "GTEXv8 Human Pituitary RNA-Seq (Feb20) TPM log2" + ], + [ + "937", + "GTEXv8_Pit_0220", + "GTEXv8 Human Pituitary RNA-Seq (Feb20) log2" + ] + ], + "Prostate mRNA": [ + [ + "987", + "GTEXv8_Prost_tpm_0220", + "GTEXv8 Human Prostate RNA-Seq (Feb20) TPM log2" + ], + [ + "938", + "GTEXv8_Prost_0220", + "GTEXv8 Human Prostate RNA-Seq (Feb20) log2" + ] + ], + "Putamen mRNA": [ + [ + "966", + "GTEXv8_PutB_tpm_0220", + "GTEXv8 Human Brain Putamen basal ganglia RNA-Seq (Feb20) TPM log2" + ], + [ + "917", + "GTEXv8_PutB_0220", + "GTEXv8 Human Brain Putamen basal ganglia RNA-Seq (Feb20) log2" + ] + ], + "Salivary Gland mRNA": [ + [ + "988", + "GTEXv8_SalGl_tpm_0220", + "GTEXv8 Human Salivary Gland Minor RNA-Seq (Feb20) TPM log2" + ], + [ + "939", + "GTEXv8_SalGl_0220", + "GTEXv8 Human Salivary Gland Minor RNA-Seq (Feb20) log2" + ] + ], + "Skin - Not Sun Exposed (Suprapubic) mRNA": [ + [ + "989", + "GTEXv8_SkN_tpm_0220", + "GTEXv8 Human Skin-Not Sun Exposed-Suprapubic RNA-Seq (Feb20) TPM log2" + ], + [ + "940", + "GTEXv8_SkN_0220", + "GTEXv8 Human Skin-Not Sun Exposed-Suprapubic RNA-Seq (Feb20) log2" + ] + ], + "Skin - Sun Exposed (Lower leg) mRNA": [ + [ + "990", + "GTEXv8_SkS_tpm_0220", + "GTEXv8 Human Skin-Sun Exposed-Lower leg RNA-Seq (Feb20) TPM log2" + ], + [ + "941", + "GTEXv8_SkS_0220", + "GTEXv8 Human Skin-Sun Exposed-Lower leg RNA-Seq (Feb20) log2" + ] + ], + "Small Intestine - Terminal Ileum mRNA": [ + [ + "997", + "GTEXv8_SInt_tpm_0220", + "GTEXv8 Human Small Intestine - Terminal Ileum RNA-Seq (Feb20) TPM log2" + ], + [ + "948", + "GTEXv8_SInt_0220", + "GTEXv8 Human Small Intestine - Terminal Ileum RNA-Seq (Feb20) log2" + ] + ], + "Spinal Cord mRNA": [ + [ + "967", + "GTEXv8_SpCo_tpm_0220", + "GTEXv8 Human Brain Spinal cord cervical c-1 RNA-Seq (Feb20) TPM log2" + ], + [ + "918", + "GTEXv8_SpCo_0220", + "GTEXv8 Human Brain Spinal cord cervical c-1 RNA-Seq (Feb20) log2" + ] + ], + "Spleen mRNA": [ + [ + "991", + "GTEXv8_Sple_tpm_0220", + "GTEXv8 Human Spleen RNA-Seq (Feb20) TPM log2" + ], + [ + "942", + "GTEXv8_Sple_0220", + "GTEXv8 Human Spleen RNA-Seq (Feb20) log2" + ] + ], + "Stomach mRNA": [ + [ + "992", + "GTEXv8_Sto_tpm_0220", + "GTEXv8 Human Stomach RNA-Seq (Feb20) TPM log2" + ], + [ + "943", + "GTEXv8_Sto_0220", + "GTEXv8 Human Stomach RNA-Seq (Feb20) log2" + ] + ], + "Substantia Nigra mRNA": [ + [ + "968", + "GTEXv8_SubN_tpm_0220", + "GTEXv8 Human Brain Substantia nigra RNA-Seq (Feb20) TPM log2" + ], + [ + "919", + "GTEXv8_SubN_0220", + "GTEXv8 Human Brain Substantia nigra RNA-Seq (Feb20) log2" + ] + ], + "Testis mRNA": [ + [ + "993", + "GTEXv8_Test_tpm_0220", + "GTEXv8 Human Testis RNA-Seq (Feb20) TPM log2" + ], + [ + "944", + "GTEXv8_Test_0220", + "GTEXv8 Human Testis RNA-Seq (Feb20) log2" + ] + ], + "Thyroid mRNA": [ + [ + "994", + "GTEXv8_Thy_tpm_0220", + "GTEXv8 Human Thyroid RNA-Seq (Feb20) TPM log2" + ], + [ + "945", + "GTEXv8_Thy_0220", + "GTEXv8 Human Thyroid RNA-Seq (Feb20) log2" + ] + ], + "Tibial mRNA": [ + [ + "955", + "GTEXv8_ArtTib_tpm_0220", + "GTEXv8 Human Artery Tibial RNA-Seq (Feb20) TPM log2" + ], + [ + "906", + "GTEXv8_ArtTib_0220", + "GTEXv8 Human Artery Tibial RNA-Seq (Feb20) log2" + ] + ], + "Uterus mRNA": [ + [ + "995", + "GTEXv8_Ut_tpm_0220", + "GTEXv8 Human Uterus RNA-Seq (Feb20) TPM log2" + ], + [ + "946", + "GTEXv8_Ut_0220", + "GTEXv8 Human Uterus RNA-Seq (Feb20) log2" + ] + ], + "Vagina mRNA": [ + [ + "996", + "GTEXv8_Vag_tpm_0220", + "GTEXv8 Human Vagina RNA-Seq (Feb20) TPM log2" + ], + [ + "947", + "GTEXv8_Vag_0220", + "GTEXv8 Human Vagina RNA-Seq (Feb20) log2" + ] + ], + "Whole Blood mRNA": [ + [ + "998", + "GTEXv8_Wbl_tpm_0220", + "GTEXv8 Human Whole Blood RNA-Seq (Feb20) TPM log2" + ], + [ + "949", + "GTEXv8_Wbl_0220", + "GTEXv8 Human Whole Blood RNA-Seq (Feb20) log2" + ] + ] + }, "HB": { "Cerebellum mRNA": [ [ @@ -1491,6 +2100,13 @@ ] }, "Islets-Gerling": { + "Islets mRNA": [ + [ + "824", + "UTHSC_HuIslets_Mar17", + "UTHSC Human Islets Affy Human Gene 2.0 ST (Mar17) RMA" + ] + ], "Phenotypes": [ [ "None", @@ -1517,94 +2133,6 @@ } }, "mouse": { - "AIL": { - "Genotypes": [ - [ - "None", - "AILGeno", - "AIL Genotypes" - ] - ], - "Hippocampus mRNA": [ - [ - "874", - "UCSD_AIL_HIP_RNA-Seq_log2_0418", - "UCSD AIL Hippocampus (Apr18) RNA-Seq Log2" - ], - [ - "844", - "UCSD_AIL_HIP_RNA-Seq_0418", - "UCSD AIL Hippocampus (Apr18) RNA-Seq" - ] - ], - "Phenotypes": [ - [ - "653", - "AILPublish", - "AIL Phenotypes" - ] - ], - "Prefrontal Cortex mRNA": [ - [ - "876", - "UCSD_AIL_PFC_RNA-Seq_log2_0418", - "UCSD AIL Prefrontal Cortex (Apr18) RNA-Seq Log2" - ], - [ - "846", - "UCSD_AIL_PFC_RNA-Seq_0418", - "UCSD AIL Prefrontal Cortex (Apr18) RNA-Seq" - ] - ], - "Striatum mRNA": [ - [ - "875", - "UCSD_AIL_STR_RNA-Seq_log2_0418", - "UCSD AIL Striatum (Apr18) RNA-Seq Log2" - ], - [ - "845", - "UCSD_AIL_STR_RNA-Seq_0418", - "UCSD AIL Striatum (Apr18) RNA-Seq" - ] - ] - }, - "AIL-LGSM-F34-A": { - "Phenotypes": [ - [ - "655", - "AIL-LGSM-F34-APublish", - "AIL F34-A Phenotypes" - ] - ] - }, - "AIL-LGSM-F34-F39-43-GBS": { - "Phenotypes": [ - [ - "654", - "AIL-LGSM-F34-F39-43-GBSPublish", - "AIL F34-F39-43-GBS Phenotypes" - ] - ] - }, - "AIL-LGSM-F34-GBS": { - "Phenotypes": [ - [ - "656", - "AIL-LGSM-F34-GBSPublish", - "AIL F34-GBS Phenotypes" - ] - ] - }, - "AIL-LGSM-F39-43-GBS": { - "Phenotypes": [ - [ - "657", - "AIL-LGSM-F39-43-GBSPublish", - "AIL F39-43-GBS Phenotypes" - ] - ] - }, "AKXD": { "Genotypes": [ [ @@ -1685,6 +2213,22 @@ ] ] }, + "B6-Lens": { + "Ocular Lens mRNA": [ + [ + "999", + "MouseB6Lens_rma_0220", + "Mouse Ocular Lens Developmental Timecourse (Feb20) RMA" + ] + ], + "Phenotypes": [ + [ + "None", + "B6-LensPublish", + "B6-Lens Phenotypes" + ] + ] + }, "B6BTBRF2": { "Genotypes": [ [ @@ -1720,6 +2264,25 @@ "B6D2Publish", "UTHSC-Glaucoma-Aged-Retina Phenotypes" ] + ], + "Retina mRNA": [ + [ + "803", + "UTHSC_mm9_B6D2_Ret_0916", + "UTHSC B6D2 Retina Affy MoGene 1.0ST (Sep16) Gene Level RMA" + ], + [ + "804", + "UTHSC_mm9_B6D2_RetEx_0916", + "UTHSC B6D2 Retina Affy MoGene 1.0ST (Sep16) Exon Level RMA" + ] + ], + "Retina microRNA": [ + [ + "806", + "UTHSC_mm10_B6D2_Ret_miRNA_1116", + "UTHSC B6D2 Retina Affy miRNA-4.0 (Nov16) RMA" + ] ] }, "B6D2F2": { @@ -1771,6 +2334,28 @@ "B6D2F2-PSU Genotypes" ] ], + "Muscle mRNA": [ + [ + "134", + "PSU-B6D2F2_0812", + "PSU B6D2F2 Muscle Affy Mouse Genome 430 2.0 (Aug12) RMA" + ], + [ + "404", + "PSU-B6D2F2_F0812", + "PSU B6D2F2 Muscle Affy Mouse Genome 430 2.0 (Aug12) RMA Females" + ], + [ + "405", + "PSU-B6D2F2_M0812", + "PSU B6D2F2 Muscle Affy Mouse Genome 430 2.0 (Aug12) RMA Males" + ], + [ + "406", + "PSU-B6D2F2_M2000812", + "PSU B6D2F2 Muscle Affy Mouse Genome 430 2.0 (Aug12) RMA Males Aged 200*" + ] + ], "Phenotypes": [ [ "None", @@ -1906,6 +2491,23 @@ "UCLA BHF2 Liver (June05) mlratio" ] ], + "Muscle mRNA": [ + [ + "203", + "UCLA_BHF2_MUSCLE_FEMALE", + "UCLA BHF2 Muscle Female mlratio*" + ], + [ + "202", + "UCLA_BHF2_MUSCLE_MALE", + "UCLA BHF2 Muscle Male mlratio*" + ], + [ + "168", + "UCLA_BHF2_MUSCLE_0605", + "UCLA BHF2 Muscle (June05) mlratio*" + ] + ], "Phenotypes": [ [ "None", @@ -2090,6 +2692,26 @@ "414", "UCLA_BXD-on_Femur_0113_RSN", "UCLA GSE27483 BXD Only Bone Femur ILM Mouse WG-6 v1.1 (Jan13) RSN" + ], + [ + "464", + "UTHSCWGU88BFMG1013", + "UTHSC WGU88 Male Bone Femur AFFY Mouse Gene ST 2.0 Gene Level (Oct13) RMA" + ], + [ + "465", + "UTHSCWGU88BFMEx1013", + "UTHSC WGU88 Male Bone Femur AFFY Mouse Gene ST 2.0 Exon Level (Oct13) RMA" + ], + [ + "466", + "UTHSCWGU88BFFG1013", + "UTHSC WGU88 Female Bone Femur AFFY Mouse Gene ST 2.0 Gene Level (Oct13) RMA" + ], + [ + "467", + "UTHSCWGU88BFFEx1013", + "UTHSC WGU88 Female Bone Femur AFFY Mouse Gene ST 2.0 Exon Level (Oct13) RMA" ] ], "Brain mRNA": [ @@ -2221,6 +2843,76 @@ "9", "CB_M_1003_M", "SJUT Cerebellum mRNA M430 (Oct03) MAS5" + ], + [ + "436", + "CMMTUBCBXDCerILM0513", + "UBC/CMMT BXD Cerebellum All Ages Combined ILM Mouse WG-6 v2.0 (May13) RankInv" + ], + [ + "441", + "CMMTUBCBXDG12CerILM0513", + "UBC/CMMT BXD E12 Cerebellum ILM Mouse WG-6 v2.0 (May13) RankInv" + ], + [ + "442", + "CMMTUBCBXDG15CerILM0513", + "UBC/CMMT BXD E15 Cerebellum ILM Mouse WG-6 v2.0 (May13) RankInv" + ], + [ + "443", + "CMMTUBCBXDG18CerILM0513", + "UBC/CMMT BXD E18 Cerebellum ILM Mouse WG-6 v2.0 (May13) RankInv" + ], + [ + "437", + "CMMTUBCBXDP00CerILM0513", + "UBC/CMMT BXD P0 Cerebellum ILM Mouse WG-6 v2.0 (May13) RankInv" + ], + [ + "438", + "CMMTUBCBXDP03CerILM0513", + "UBC/CMMT BXD P3 Cerebellum ILM Mouse WG-6 v2.0 (May13) RankInv" + ], + [ + "439", + "CMMTUBCBXDP06CerILM0513", + "UBC/CMMT BXD P6 Cerebellum ILM Mouse WG-6 v2.0 (May13) RankInv" + ], + [ + "440", + "CMMTUBCBXDP09CerILM0513", + "UBC/CMMT BXD P9 Cerebellum ILM Mouse WG-6 v2.0 (May13) RankInv" + ], + [ + "415", + "GenEx_BXD_CerebEt_RMA_0213", + "GenEx BXD EtOH Cerebellum Affy M430 2.0 (Feb13) RMA Both Sexes" + ], + [ + "416", + "GenEx_BXD_CerebEt_RMA_F_0213", + "GenEx BXD EtOH Cerebellum Affy M430 2.0 (Feb13) RMA Females" + ], + [ + "417", + "GenEx_BXD_CerebEt_RMA_M_0213", + "GenEx BXD EtOH Cerebellum Affy M430 2.0 (Feb13) RMA Males" + ], + [ + "418", + "GenEx_BXD_CerebSal_RMA_0213", + "GenEx BXD Sal Cerebellum Affy M430 2.0 (Feb13) RMA Both Sexes" + ], + [ + "419", + "GenEx_BXD_CerebSal_RMA_F_0213", + "GenEx BXD Sal Cerebellum Affy M430 2.0 (Feb13) RMA Females" + ], + [ + "420", + "GenEx_BXD_CerebSal_RMA_M_0213", + "GenEx BXD Sal Cerebellum Affy M430 2.0 (Feb13) RMA Males" ] ], "Eye mRNA": [ @@ -2297,6 +2989,21 @@ "597", "UTHSC_GutExL_0414", "UTHSC Mouse BXD Gastrointestinal Affy MoGene 1.0 ST Exon Level (Apr14) RMA" + ], + [ + "839", + "EPFL-LISP_BXD_Col-CD+HFD0917", + "EPFL/LISP BXD CD+HFD Gastrointestinal Affy Clariom S GeneLevel Main (Sep17) RMA" + ], + [ + "841", + "EPFL-LISP_BXD_Col-HFD0917", + "EPFL/LISP BXD HFD Gastrointestinal Affy Clariom S GeneLevel Main (Sep17) RMA" + ], + [ + "840", + "EPFL-LISP_BXD_Col-CD0917", + "EPFL/LISP BXD CD Gastrointestinal Affy Clariom S GeneLevel Main (Sep17) RMA" ] ], "Genotypes": [ @@ -2502,6 +3209,23 @@ "711", "UTHSC_BXD_AgeHipp0515", "UTHSC BXD Aged Hippocampus Affy MoGene1.0 ST (May15) RMA Gene Level" + ], + [ + "393", + "UTHSC_BXD_HArev3_0912", + "UTHSC BXD Aged Hippocampus rev3 Affy Mouse Gene 1.0 ST (Sep12) RMA" + ], + [ + "392", + "UTHSC_BXD_H_0912", + "UTHSC BXD Aged Hippocampus Affy Mouse Gene 1.0 ST (Sep12) RMA Exon Level" + ] + ], + "Hippocampus microRNA": [ + [ + "491", + "UTHSC_BXD_Hip_miRNASeq0214", + "UTHSC BXD Hippocampus Ion Torrent microRNA (Feb14) RPKM*" ] ], "Hypothalamus mRNA": [ @@ -2578,6 +3302,30 @@ "Mouse Kidney M430v2 (Jul06) PDNN" ] ], + "Leucocytes mRNA": [ + [ + "218", + "Illum_BXD_PBL_1108", + "UWA Illumina PBL (Nov08) RSN*" + ] + ], + "Liver DNAm": [ + [ + "891", + "UTHSC-BXD-LivDNAm-1119", + "UTHSC BXD Liver CD-HFD DNAm (Nov19) Sesame" + ], + [ + "892", + "UTHSC-BXD-LivHFDNAm-1119", + "UTHSC BXD Liver HFD DNAm (Nov19) Sesame" + ], + [ + "893", + "UTHSC-BXD-LivCDNAm-1119", + "UTHSC BXD Liver CD DNAm (Nov19) Sesame" + ] + ], "Liver Metabolome": [ [ "835", @@ -2617,6 +3365,21 @@ ], "Liver Proteome": [ [ + "887", + "EPFL-ETHZ-BXD-LivProtAvg-CD-HF-1119", + "EPFL/ETHZ BXD Liver Proteome CD+HFD (Nov19)" + ], + [ + "888", + "EPFL-ETHZ-BXD-LivProtAvg-CD-1119", + "EPFL/ETHZ BXD Liver Proteome CD (Nov19)" + ], + [ + "889", + "EPFL-ETHZ-BXD-LivProtAvg-HFD-1119", + "EPFL/ETHZ BXD Liver Proteome HFD (Nov19)" + ], + [ "540", "EPFLETHZBXDprotCD0514", "EPFL/ETHZ BXD Liver, Chow Diet (Jun16) Top100 SWATH" @@ -2684,6 +3447,21 @@ "NIA Aging BXD CD Liver RNA-Seq (Aug18) Log2" ], [ + "851", + "NIA-AgBXD-Liv_CDHFD-0818", + "NIA Aging BXD CD+HFD Liver Affy Clariom S Gene Level (Aug18) RMA" + ], + [ + "852", + "NIA-AgBXD-Liv_HFD-0818", + "NIA Aging BXD HFD Liver Affy Clariom S Gene Level (Aug18) RMA" + ], + [ + "853", + "NIA-AgBXD-Liv_CD-0818", + "NIA Aging BXD CD Liver Affy Clariom S Gene Level (Aug18) RMA" + ], + [ "818", "UCLA_BXD_Liv_Jan16", "UCLA BXD Liver Affy M430 2.0 (Jan16) RMA" @@ -2699,6 +3477,11 @@ "EPFL/LISP BXD HFD Liver Affy Mouse Gene 1.0 ST (Apr13) RMA" ], [ + "849", + "EPFLMouseLiverCDEx0413", + "EPFL/LISP BXD CD Liver Affy Mouse Gene 1.0 ST (Apr13) RMA Exon Level" + ], + [ "848", "EPFLMouseLiverHFCEx0413", "EPFL/LISP BXD HFC Liver Affy Mouse Gene 1.0 ST (Apr13) RMA Exon Level" @@ -2709,11 +3492,6 @@ "EPFL/LISP BXD CD Liver Affy Mouse Gene 1.0 ST (Apr13) RMA" ], [ - "849", - "EPFLMouseLiverCDEx0413", - "EPFL/LISP BXD CD Liver Affy Mouse Gene 1.0 ST (Apr13) RMA Exon Level" - ], - [ "433", "EPFLMouseLiverBothExRMA0413", "EPFL/LISP BXD CD+HFD Liver Affy Mouse Gene 1.0 ST (Apr13) RMA Exon Level" @@ -2799,6 +3577,26 @@ "161", "HZI_0408_M", "HZI Lung M430v2 (Apr08) MAS5" + ], + [ + "807", + "HZI_LungBXD_RNA-Seq_1116", + "HZI Lung Flu Infected BXD (Nov16) RNA-Seq*" + ], + [ + "598", + "HZI_PR8M-F_1014", + "HZI PR8M-Infected Lungs Females RNAseq (Oct14) RPKM Log2*" + ], + [ + "387", + "HZI_PR8M_Q_0612", + "HZI PR8M-Infected Lungs Agilent4x44 (Apr12) Quantile Females" + ], + [ + "424", + "HZI_LTCF_0313", + "HZI Lung Time Course Flu PR8M (Mar13) Schughart*" ] ], "Midbrain mRNA": [ @@ -2808,6 +3606,23 @@ "VU BXD Midbrain Agilent SurePrint G3 Mouse GE (May12) Quantile" ] ], + "Muscle Metabolome": [ + [ + "476", + "EPFL-LISP_MusPMetCDHFD1213", + "EPFL/LISP BXD Muscle Polar Metabolites CD+HFD (Jun14)" + ], + [ + "477", + "EPFL-LISP_MusPMetHFD1213", + "EPFL/LISP BXD Muscle Polar Metabolites HFD (Jun14)" + ], + [ + "478", + "EPFL-LISP_MusPMetCD1213", + "EPFL/LISP BXD Muscle Polar Metabolites CD (Jun14)" + ] + ], "Muscle mRNA": [ [ "378", @@ -2877,11 +3692,68 @@ "BIDMC/UTHSC Dev Neocortex P3 ILMv6.2 (Nov10) RankInv" ] ], + "Neutrophils mRNA": [ + [ + "595", + "UTHSC-Neut-1014", + "UTHSC Elicited Peritoneal Neutrophils Affy MoGene 2.0 ST (Oct14) RMA" + ], + [ + "596", + "UTHSC-Neut_EL-1014", + "UTHSC Elicited Peritoneal Neutrophils Affy MoGene 2.0 ST (Oct14) RMA Exon Level" + ] + ], "Nucleus Accumbens mRNA": [ [ "156", "VCUSalo_1007_R", "VCU BXD NAc Sal M430 2.0 (Oct07) RMA" + ], + [ + "792", + "VCU_BXD_Nac_CIE_Air_0416", + "VCU BXD NAc CIE Air Masked ComBat M430 2.0 (Apr16) RMA" + ], + [ + "793", + "VCU_BXD_Nac_CIE_AirZ_0416", + "VCU BXD NAc CIE Air Masked ComBat M430 2.0 (Apr16) RMA Z-score" + ], + [ + "794", + "VCU_BXD_Nac_CIE_Et_0416", + "VCU BXD NAc CIE EtOH Masked ComBat M430 2.0 (Apr16) RMA" + ], + [ + "795", + "VCU_BXD_Nac_CIE_EtZ_0416", + "VCU BXD NAc CIE EtOH Masked ComBat M430 2.0 (Apr16) RMA Z-score" + ], + [ + "155", + "VCUEtOH_1007_R", + "VCU BXD NAc EtOH M430 2.0 (Oct07) RMA" + ], + [ + "154", + "VCUSal_1007_R", + "VCU BXD NAc EtOH vs Sal M430 2.0 (Oct07) Sscore*" + ], + [ + "409", + "VCU_NAc_Air_0113_R", + "VCU BXD NAc CIE Air M430 2.0 (Jan13) RMA" + ], + [ + "408", + "VCU_NAc_Et_0113_R", + "VCU BXD NAc CIE EtOH M430 2.0 (Jan13) RMA" + ], + [ + "407", + "VCU_NAc_AvE_0113_Ss", + "VCU BXD NAc EtOH vs CIE Air M430 2.0 (Jan13) Sscore*" ] ], "Phenotypes": [ @@ -2918,8 +3790,45 @@ "INIA Pituitary Affy MoGene 1.0ST (Jun12) RMA Exon Level" ] ], + "Popliteal Lymph Node mRNA": [ + [ + "390", + "STJ_PLN_0912", + "St Jude BXD Popliteal Lymph Node Affy HT MG-430 PM (Sep12) RMA" + ] + ], "Prefrontal Cortex mRNA": [ [ + "898", + "DOD-BXD-PFC-CD-RNA-Seq-ComB-1019", + "DOD BXD PFC GWI CD RNA-Seq ComB (Dec19) TPM Log2" + ], + [ + "899", + "DOD-BXD-PFC-CTL-RNA-Seq-ComB-1019", + "DOD BXD PFC GWI CTL RNA-Seq ComB (Dec19) TPM Log2" + ], + [ + "900", + "DOD-BXD-PFC-DFP-RNA-Seq-ComB-1019", + "DOD BXD PFC GWI DFP RNA-Seq ComB (Dec19) TPM Log2" + ], + [ + "883", + "DOD-BXD-PFC-CD-RNA-Seq-1019", + "DOD BXD PFC GWI CD RNA-Seq (Oct19) TPM Log2" + ], + [ + "884", + "DOD-BXD-PFC-CTL-RNA-Seq-1019", + "DOD BXD PFC GWI CTL RNA-Seq (Oct19) TPM Log2" + ], + [ + "885", + "DOD-BXD-PFC-DFP-RNA-Seq-1019", + "DOD BXD PFC GWI DFP RNA-Seq (Oct19) TPM Log2" + ], + [ "135", "VCUSal_1206_R", "VCU BXD PFC Sal M430 2.0 (Dec06) RMA" @@ -2933,6 +3842,41 @@ "137", "VCUSal_1006_R", "VCU BXD PFC Et vs Sal M430 2.0 (Dec06) Sscore" + ], + [ + "788", + "VCU_BXD_PFC_CIE_Air_0416", + "VCU BXD PFC CIE Air Masked ComBat M430 2.0 (Apr16) RMA" + ], + [ + "789", + "VCU_BXD_PFC_CIE_AirZ_0416", + "VCU BXD PFC CIE Air Masked ComBat M430 2.0 (Apr16) RMA Z-score" + ], + [ + "790", + "VCU_BXD_PFC_CIE_Et_0416", + "VCU BXD PFC CIE EtOH Masked ComBat M430 2.0 (Apr16) RMA" + ], + [ + "791", + "VCU_BXD_PFC_CIE_EtZ_0416", + "VCU BXD PFC CIE EtOH Masked ComBat M430 2.0 (Apr16) RMA Z-score" + ], + [ + "299", + "VCU_PF_AvE_0111_Ss", + "VCU BXD PFC EtOH vs CIE Air M430 2.0 (Jan11) Sscore*" + ], + [ + "300", + "VCU_PF_Et_0111_R", + "VCU BXD PFC CIE EtOH M430 2.0 (Jan11) RMA" + ], + [ + "301", + "VCU_PF_Air_0111_R", + "VCU BXD PFC CIE Air M430 2.0 (Jan11) RMA" ] ], "Retina mRNA": [ @@ -2972,11 +3916,26 @@ "DoD Retina After Blast Affy MoGene 2.0 ST (Mar16) RMA Exon Level" ], [ + "796", + "DoDRetBlastvsNormalEx_0416", + "DoD Retina Blast vs Normal Retina Affy MoGene 2.0 ST (Apr16) RMA Exon Level" + ], + [ "385", "ONCRetILM6_0412", "ONC HEI Retina (April 2012) RankInv" ], [ + "386", + "B6D2ONCILM_0412", + "B6D2 ONC Retina (April 2012) RankInv" + ], + [ + "372", + "G2HEIONCRetILM6_0911", + "G2 HEI ONC Retina Illumina V6.2 (Sep11) RankInv" + ], + [ "371", "HEIONCvsCRetILM6_0911", "HEI ONC vs Control Retina Illumina V6.2 (Sep11) RankInv" @@ -3027,6 +3986,11 @@ "227", "IoP_SPL_RMA_0509", "IoP Affy MOE 430v2 Spleen (May09) RMA" + ], + [ + "216", + "Illum_BXD_Spl_1108", + "UWA Illumina Spleen (Nov08) RSN*" ] ], "Striatum mRNA": [ @@ -3105,6 +4069,13 @@ "HZI Treg M430v2 (Feb11) RMA" ] ], + "Thymus mRNA": [ + [ + "217", + "Illum_BXD_Thy_1108", + "UWA Illumina Thymus (Nov08) RSN*" + ] + ], "Ventral Tegmental Area mRNA": [ [ "228", @@ -3140,13 +4111,27 @@ "BXD-Harvested Genotypes" ] ], - "Hippocampus mRNA": [ + "Hippocampus Proteome": [ [ "873", "JAX-BXD-Hip-Pro-0219", "JAX BXD Hippocampal Proteome (Feb19)" ] ], + "Liver DNAm": [ + [ + "890", + "INIA-BXD-LivDNAm-1119", + "INIA BXD Liver DNAm CD-HFD (Nov19) Sesame" + ] + ], + "Liver Proteome": [ + [ + "886", + "EPFL-ETHZ-BXD-LivProtCD-HF-1119", + "EPFL/ETHZ BXD Liver Proteome CD-HFD (Nov19)" + ] + ], "Liver mRNA": [ [ "877", @@ -3154,14 +4139,24 @@ "UTHSC BXD Harvested Liver RNA-Seq (Oct19) TPM Log2" ], [ + "850", + "UTHSC-BXD-Liv-0818", + "UTHSC BXD Liver Affy Clariom S GeneLevel Main (Aug18) RMA" + ], + [ "843", "UTHSC-BXD-Harv_Liv-0118", "UTHSC BXD Harvested Liver RNA-Seq (Aug18) Log2" + ], + [ + "842", + "UTHSC-BXD-Liv-0917", + "UTHSC BXD Liver Affy Clariom S GeneLevel Main (Sep17) RMA" ] ], "Phenotypes": [ [ - "None", + "660", "BXD-HarvestedPublish", "BXD-NIA-Longevity Phenotypes" ] @@ -3263,6 +4258,29 @@ ] ] }, + "CC": { + "Genotypes": [ + [ + "663", + "CCGeno", + "CC Genotypes" + ] + ], + "Midbrain mRNA": [ + [ + "894", + "LSRU-CC-ST-1219", + "LSRU CC Male Midbrain RNA-Seq (Dec19) TPM Log2" + ] + ], + "Phenotypes": [ + [ + "662", + "CCPublish", + "CC Phenotypes" + ] + ] + }, "CFW": { "Hippocampus mRNA": [ [ @@ -3360,9 +4378,35 @@ "CIE-RMAPublish", "CIE-RMA Phenotypes" ] + ], + "Prefrontal Cortex mRNA": [ + [ + "832", + "INIA_UTHSC_PFC_AffyMTA1_May17", + "INIA-UTHSC Prefrontal Cortex CIE Affy MTA 1.0 GeneLevel (Apr17) RMA" + ] + ], + "Striatum mRNA": [ + [ + "833", + "INIA_UTHSC_Str_AffyMTA1_May17", + "INIA-UTHSC Striatum CIE Affy MTA 1.0 GeneLevel (Apr17) RMA" + ] ] }, "CMS": { + "Hippocampus mRNA": [ + [ + "771", + "CMS_Hipp1115", + "Hippocampus Mouse Transcriptome Assay 1.0 Gene Level Main (Nov15) RMA" + ], + [ + "800", + "CMS_Hipp_ZScr_1115", + "Hippocampus Mouse Transcriptome Assay 1.0 Gene Level Z-Score (Nov15) RMA" + ] + ], "Phenotypes": [ [ "None", @@ -3520,6 +4564,92 @@ ] ] }, + "DOD-BXD-GWI": { + "Genotypes": [ + [ + "None", + "DOD-BXD-GWIGeno", + "DOD-BXD-GWI Genotypes" + ] + ], + "Prefrontal Cortex mRNA": [ + [ + "895", + "DOD-BXD-Ind-PFC-CD-RNA-Seq-ComB-1019", + "DOD BXD INDV PFC GWI CD RNA-Seq ComB (Dec19) TPM Log2" + ], + [ + "896", + "DOD-BXD-Ind-PFC-CTL-RNA-Seq-ComB-1019", + "DOD BXD INDV PFC GWI CTL RNA-Seq ComB (Dec19) TPM Log2" + ], + [ + "897", + "DOD-BXD-Ind-PFC-DFP-RNA-Seq-ComB-1019", + "DOD BXD INDV PFC GWI DFP RNA-Seq ComB (Dec19) TPM Log2" + ], + [ + "880", + "DOD-BXD-Ind-PFC-CD-RNA-Seq-1019", + "DOD BXD INDV PFC GWI CD RNA-Seq (Oct19) TPM Log2" + ], + [ + "881", + "DOD-BXD-Ind-PFC-CTL-RNA-Seq-1019", + "DOD BXD INDV PFC GWI CTL RNA-Seq (Oct19) TPM Log2" + ], + [ + "882", + "DOD-BXD-Ind-PFC-DFP-RNA-Seq-1019", + "DOD BXD INDV PFC GWI DFP RNA-Seq (Oct19) TPM Log2" + ] + ] + }, + "EMSR": { + "Hippocampus mRNA": [ + [ + "825", + "UTHSC_EMSR_All_AffyMTA1_Mar17", + "UTHSC Hippocampus All Treatments Affy MTA 1.0 Gene Level (Mar17) RMA" + ], + [ + "826", + "UTHSC_EMSR_Sal_AffyMTA1_Mar17", + "UTHSC Hippocampus Saline Affy MTA 1.0 Gene Level (Mar17) RMA" + ], + [ + "827", + "UTHSC_EMSR_Et_AffyMTA1_Mar17", + "UTHSC Hippocampus Ethanol Affy MTA 1.0 Gene Level (Mar17) RMA" + ], + [ + "828", + "UTHSC_EMSR_St_AffyMTA1_Mar17", + "UTHSC Hippocampus Stress Affy MTA 1.0 Gene Level (Mar17) RMA" + ], + [ + "829", + "UTHSC_EMSR_EtSt_AffyMTA1_Mar17", + "UTHSC Hippocampus Ethanol-Stress Affy MTA 1.0 Gene Level (Mar17) RMA" + ] + ] + }, + "HET3-ITP": { + "Genotypes": [ + [ + "None", + "HET3-ITPGeno", + "HET3-ITP Genotypes" + ] + ], + "Phenotypes": [ + [ + "661", + "HET3-ITPPublish", + "HET3 ITP Longevity Phenotypes" + ] + ] + }, "HS": { "Hippocampus mRNA": [ [ @@ -3559,16 +4689,123 @@ ] ] }, - "LGSM-AIG34_50-56-GBS": { + "JAX-D2-Mono-RNA-Seq": { + "Retina mRNA": [ + [ + "878", + "JAX-D2-Mono1vPBMC-Ret-RNA-Seq-0619", + "JAX DBA/2J Monocyte 1 vs PBMC RNA-Seq (Jun19)" + ], + [ + "879", + "JAX-D2-Mono2vPBMC-Ret-RNA-Seq-0619", + "JAX DBA/2J Monocyte 2 vs PBMC RNA-Seq (Jun19)" + ] + ] + }, + "LGSM-AI": { + "Hippocampus mRNA": [ + [ + "874", + "UCSD_AIL_HIP_RNA-Seq_log2_0418", + "UCSD AIL Hippocampus (Apr18) RNA-Seq Log2" + ], + [ + "844", + "UCSD_AIL_HIP_RNA-Seq_0418", + "UCSD AIL Hippocampus (Apr18) RNA-Seq" + ] + ], "Phenotypes": [ [ "None", + "LGSM-AIPublish", + "LGSM AI Phenotypes" + ] + ], + "Prefrontal Cortex mRNA": [ + [ + "876", + "UCSD_AIL_PFC_RNA-Seq_log2_0418", + "UCSD AIL Prefrontal Cortex (Apr18) RNA-Seq Log2" + ], + [ + "846", + "UCSD_AIL_PFC_RNA-Seq_0418", + "UCSD AIL Prefrontal Cortex (Apr18) RNA-Seq" + ] + ], + "Striatum mRNA": [ + [ + "875", + "UCSD_AIL_STR_RNA-Seq_log2_0418", + "UCSD AIL Striatum (Apr18) RNA-Seq Log2" + ], + [ + "845", + "UCSD_AIL_STR_RNA-Seq_0418", + "UCSD AIL Striatum (Apr18) RNA-Seq" + ] + ] + }, + "LGSM-AI-G34-A": { + "Phenotypes": [ + [ + "655", + "LGSM-AI-G34-APublish", + "LGSM AI G34 Phenotypes" + ] + ] + }, + "LGSM-AI-G34-GBS": { + "Phenotypes": [ + [ + "656", + "LGSM-AI-G34-GBSPublish", + "LGSM AI G34 GBS Phenotypes" + ] + ] + }, + "LGSM-AI-G34_39-43-GBS": { + "Phenotypes": [ + [ + "657", + "LGSM-AI-G34_39-43-GBSPublish", + "LGSM AI G34 G39-43 GBS Phenotypes" + ] + ] + }, + "LGSM-AI-G39-43-GBS": { + "Phenotypes": [ + [ + "654", + "LGSM-AI-G39-43-GBSPublish", + "LGSM AI G39-43 GBS Phenotypes" + ] + ] + }, + "LGSM-AIG34_50-56-GBS": { + "Phenotypes": [ + [ + "659", "LGSM-AIG34_50-56-GBSPublish", - "LGSM AIG34/50-56 GBS Phenotypes" + "LGSM AI G34/50-56 GBS Phenotypes" ] ] }, "LXS": { + "Brain mRNA": [ + [ + "783", + "UCAMC_LXSBrEtOH_RNA-Seq_0216", + "UCAMC LXS Whole Brain Ethanol RNA Sequence (Feb16) FPKM*" + ], + [ + "784", + "UCAMC_LXSBrSal_RNA-Seq_0216", + "UCAMC LXS Whole Brain Saline RNA Sequence (Feb16) FPKM*" + ] + ], "Genotypes": [ [ "601", @@ -3578,6 +4815,11 @@ ], "Hippocampus mRNA": [ [ + "214", + "Illum_LXS_Hipp_NOE_1008", + "Hippocampus Illumina NOE (Oct08) RankInv beta" + ], + [ "211", "Illum_LXS_Hipp_RSS_1008", "Hippocampus Illumina RSS (Oct08) RankInv beta" @@ -3598,11 +4840,6 @@ "Hippocampus Illumina RSE (Oct08) RankInv beta" ], [ - "214", - "Illum_LXS_Hipp_NOE_1008", - "Hippocampus Illumina NOE (Oct08) RankInv beta" - ], - [ "143", "Illum_LXS_Hipp_loess0807", "Hippocampus Illumina (Aug07) LOESS" @@ -3650,6 +4887,16 @@ "130", "VCUSal_0806_R", "VCU LXS PFC Sal M430A 2.0 (Aug06) RMA" + ], + [ + "132", + "VCUEt_vs_Sal_0806_R", + "VCU LXS PFC Et vs Sal M430A 2.0 (Aug06) Sscore*" + ], + [ + "131", + "VCUEtOH_0806_R", + "VCU LXS PFC EtOH M430A 2.0 (Aug06) RMA" ] ] }, @@ -3701,6 +4948,11 @@ "273", "UMUTAffyExon_0209_RMA_MDP", "UMUTAffy Hippocampus Exon (Feb09) RMA MDP" + ], + [ + "594", + "UFL-MDP-Hipp0814", + "UFL MDP Hippocampus Antidepressant Affy Mouse 430 2.0 (Aug14) RMA" ] ], "Liver mRNA": [ @@ -3795,6 +5047,36 @@ "SOTNOT-OHSU Genotypes" ] ] + }, + "Scripps-2013": { + "Anterior Cingulate Cortex mRNA": [ + [ + "450", + "ScrBXDACC4G0513", + "Scripps BXD ACC 4 Groups Affy Mouse Gene 1.0 ST (May13) RMA Gene Level" + ], + [ + "451", + "ScrBXDACC4GEx0513", + "Scripps BXD ACC 4 Groups Affy Mouse Gene 1.0 ST (May13) RMA Exon Level" + ] + ] + }, + "UTHSC-Cannabinoid": { + "Genotypes": [ + [ + "None", + "UTHSC-CannabinoidGeno", + "UTHSC-Cannabinoid Genotypes" + ] + ], + "Phenotypes": [ + [ + "None", + "UTHSC-CannabinoidPublish", + "UTHSC Cannabinoid Pilot Phenotypes" + ] + ] } }, "poplar": { @@ -3809,22 +5091,6 @@ } }, "rat": { - "HRDP": { - "Genotypes": [ - [ - "None", - "HRDPGeno", - "HRDP Genotypes" - ] - ], - "Phenotypes": [ - [ - "None", - "HRDPPublish", - "HRDP Phenotypes" - ] - ] - }, "HSNIH-Palmer": { "Infralimbic Cortex mRNA": [ [ @@ -4011,295 +5277,404 @@ "arabidopsis": [ [ "BayXSha", - "BayXSha" + "BayXSha", + "Family:None" ], [ "ColXBur", - "ColXBur" + "ColXBur", + "Family:None" ], [ "ColXCvi", - "ColXCvi" + "ColXCvi", + "Family:None" ] ], "barley": [ [ "QSM", - "QSM" + "QSM", + "Family:None" ], [ "SXM", - "SXM" + "SXM", + "Family:None" ] ], "drosophila": [ [ "DGRP", - "Drosophila Genetic Reference Panel" + "Drosophila Genetic Reference Panel", + "Family:None" ], [ "Oregon-R_x_2b3", - "Oregon-R x 2b3" + "Oregon-R x 2b3", + "Family:None" ] ], "human": [ [ "HB", - "Brain, Aging: AD, HD, Normal Gene Expression (Harvard/Merck)" + "Brain, Aging: AD, HD, Normal Gene Expression (Harvard/Merck)", + "Family:None" ], [ "AD-cases-controls", - "Brain, Aging: AD, Normal Gene Expression (Liang)" + "Brain, Aging: AD, Normal Gene Expression (Liang)", + "Family:None" ], [ "AD-cases-controls-Myers", - "Brain, Aging: AD, Normal Gene Expression with Genotypes (Myers)" + "Brain, Aging: AD, Normal Gene Expression with Genotypes (Myers)", + "Family:None" ], [ "Aging-Brain-UCI", - "Brain, Aging: Normal Gene Expression (UCI/Cotman)" + "Brain, Aging: Normal Gene Expression (UCI/Cotman)", + "Family:None" ], [ "HCP", - "Brain, Cognition, Human Connectome Project" + "Brain, Cognition, Human Connectome Project", + "Family:None" ], [ "HSB", - "Brain, Development: Normal Gene Expression (Yale/Sestan)" + "Brain, Development: Normal Gene Expression (Yale/Sestan)", + "Family:None" ], [ "Brain-Normal-NIH-Gibbs", - "Brain: Normal Gene Expression (NIH/Gibbs)" + "Brain: Normal Gene Expression (NIH/Gibbs)", + "Family:None" ], [ "CANDLE", - "Child Development: CANDLE Cohort with Genotypes (TUCI/UTHSC)" + "Child Development: CANDLE Cohort with Genotypes (TUCI/UTHSC)", + "Family:None" ], [ "GTEx", - "GTEx v3 All Tissues, RNA-Seq with Genotypes" + "GTEx v3 All Tissues, RNA-Seq with Genotypes", + "Family:None" ], [ "GTEx_v5", - "GTEx v5 All Tissues, RNA-Seq with Genotypes" + "GTEx v5 All Tissues, RNA-Seq with Genotypes", + "Family:None" + ], + [ + "GTEx_v8", + "GTEx v8 All Tissues, RNA-Seq without Genotypes", + "Family:None" ], [ "HLC", - "Liver: Normal Gene Expression with Genotypes (Merck)" + "Liver: Normal Gene Expression with Genotypes (Merck)", + "Family:None" ], [ "HLT", - "Lung: Normal Gene Expression (Merck)" + "Lung: Normal Gene Expression (Merck)", + "Family:None" ], [ "CEPH-2004", - "Lymphoblastoid Cells: Gene Expression (CEPH, Williams)" + "Lymphoblastoid Cells: Gene Expression (CEPH, Williams)", + "Family:None" ], [ "Islets-Gerling", - "Pancreatic: Islets (UTHSC/Gerling)" + "Pancreatic: Islets (UTHSC/Gerling)", + "Family:None" ], [ "TIGEM-Retina-RNA-Seq", - "Retina: Normal Adult Gene Expression, RNA-Seq (TIGEM)" + "Retina: Normal Adult Gene Expression, RNA-Seq (TIGEM)", + "Family:None" ] ], "mouse": [ [ - "AIL", - "AIL Advanced Intercross Line" + "AKXD", + "AKXD Family", + "Family:Reference Populations" ], [ - "AIL-LGSM-F34-A", - "AIL LGSM F34 (Array)" + "AXBXA", + "AXB/BXA Family", + "Family:Reference Populations" ], [ - "AIL-LGSM-F34-GBS", - "AIL LGSM F34 (GBS)" + "BXD", + "BXD Family", + "Family:Reference Populations" ], [ - "AIL-LGSM-F34-F39-43-GBS", - "AIL LGSM F34 and F39-43 (GBS)" + "BXH", + "BXH Family", + "Family:Reference Populations" ], [ - "AIL-LGSM-F39-43-GBS", - "AIL LGSM F39-43 (GBS)" + "CC", + "CC Family", + "Family:Reference Populations" ], [ - "AKXD", - "AKXD RI Family" + "CXB", + "CXB Family", + "Family:Reference Populations" ], [ - "AXBXA", - "AXB/BXA RI Family" + "LXS", + "ILSXISS (LXS) Family", + "Family:Reference Populations" ], [ - "B6BTBRF2", - "B6BTBRF2" + "MDP", + "Mouse Diversity Panel", + "Family:Reference Populations" ], [ - "Linsenbardt-Boehm", - "B6D2 EtOH Selected Advanced Intercross" + "B6D2RI", + "BXD Aged Hippocampus", + "Family:BXD Individual Data" ], [ - "B6D2F2", - "B6D2F2" + "BXD-Bone", + "BXD Bone Individual Data", + "Family:BXD Individual Data" ], [ - "B6D2F2-PSU", - "B6D2F2 PSU" + "DOD-BXD-GWI", + "BXD DOD Gulf War Illness", + "Family:BXD Individual Data" ], [ - "BDF2-1999", - "BDF2 UCLA" + "BXD-Harvested", + "BXD NIA Longevity Study", + "Family:BXD Individual Data" ], [ - "BDF2-2005", - "BDF2-2005" + "UTHSC-Cannabinoid", + "BXD UTHSC Cannabinoid Pilot", + "Family:BXD Individual Data" ], [ - "BHHBF2", - "BH/HB F2 UCLA" + "B6BTBRF2", + "B6BTBRF2", + "Family:Crosses, AIL, HS" ], [ - "BHF2", - "BHF2 (Apoe Null) UCLA" + "BHHBF2", + "B6C3HF2 UCLA Metabolism", + "Family:Crosses, AIL, HS" ], [ - "B6D2RI", - "BXD Aged" + "BHF2", + "B6C3HF2(APOE-) UCLA Metabolism", + "Family:Crosses, AIL, HS" ], [ - "BXD-Bone", - "BXD Bone Individual Data" + "Linsenbardt-Boehm", + "B6D2 EtOH Selected Advanced Intercross", + "Family:Crosses, AIL, HS" ], [ - "BXD-Harvested", - "BXD NIA Longevity Study" + "B6D2F2", + "B6D2F2 OHSU Brain", + "Family:Crosses, AIL, HS" ], [ - "BXD", - "BXD RI Family" + "BDF2-2005", + "B6D2F2 OHSU Striatum", + "Family:Crosses, AIL, HS" ], [ - "BXD300", - "BXD300" + "B6D2F2-PSU", + "B6D2F2 PSU Muscle", + "Family:Crosses, AIL, HS" ], [ - "BXH", - "BXH RI Family" + "BDF2-1999", + "B6D2F2 UCLA Liver", + "Family:Crosses, AIL, HS" ], [ "CTB6F2", - "CastB6/B6Cast F2 UCLA" + "CastB6/B6Cast F2 UCLA", + "Family:Crosses, AIL, HS" ], [ "CFW", - "CFW Outbred GWAS" + "CFW Outbred GWAS", + "Family:Crosses, AIL, HS" ], [ - "CIE-INIA", - "Chronic Intermittent Ethanol Phase 1" + "HET3-ITP", + "HET3 ITP Longevity", + "Family:Crosses, AIL, HS" ], [ - "CIE-RMA", - "Chronic Intermittent Ethanol Phase 2" + "HS", + "Heterogeneous Stock", + "Family:Crosses, AIL, HS" ], [ - "CMS", - "Chronic Mild Stress" + "HS-CC", + "Heterogeneous Stock Collaborative Cross", + "Family:Crosses, AIL, HS" ], [ - "CXB", - "CXB RI Family (strain means)" + "LGSM-AI-G34_39-43-GBS", + "LGSM AI G34 G39-43 Palmer (GBS)", + "Family:Crosses, AIL, HS" ], [ - "D2GM", - "D2 Glaucoma Model" + "LGSM-AI-G34-A", + "LGSM AI G34 Palmer (Array)", + "Family:Crosses, AIL, HS" ], [ - "B6D2", - "Glaucoma and Aged Retina, UTHSC" + "LGSM-AI-G34-GBS", + "LGSM AI G34 Palmer (GBS)", + "Family:Crosses, AIL, HS" ], [ - "HS", - "Heterogeneous Stock" + "LGSM-AIG34_50-56-GBS", + "LGSM AI G34/50-56 Lionikas (GBS)", + "Family:Crosses, AIL, HS" ], [ - "HS-CC", - "Heterogeneous Stock Collaborative Cross" + "LGSM-AI-G39-43-GBS", + "LGSM AI G39-43 Palmer (GBS)", + "Family:Crosses, AIL, HS" ], [ - "LXS", - "ILSXISS (LXS) RI Family (strain means)" + "LGSM-AI", + "LGSM AI Palmer", + "Family:Crosses, AIL, HS" ], [ - "LGSM-AIG34_50-56-GBS", - "LGSM AI G34/50-56 Lionikas (GBS)" + "SOTNOT-OHSU", + "SOTNOT-OHSU", + "Family:Crosses, AIL, HS" ], [ - "MDP", - "Mouse Diversity Panel (strain means)" + "B6-Lens", + "B6 Lens", + "Family:Non-genetic Cohort" + ], + [ + "CIE-INIA", + "Chronic Intermittent Ethanol Phase 1", + "Family:Non-genetic Cohort" + ], + [ + "CIE-RMA", + "Chronic Intermittent Ethanol Phase 2", + "Family:Non-genetic Cohort" + ], + [ + "CMS", + "Chronic Mild Stress", + "Family:Non-genetic Cohort" + ], + [ + "D2GM", + "D2 Glaucoma Model", + "Family:Non-genetic Cohort" + ], + [ + "JAX-D2-Mono-RNA-Seq", + "D2 Glaucoma Monocyte JAX", + "Family:Non-genetic Cohort" + ], + [ + "EMSR", + "Ethanol-Medicated Stress Reduction", + "Family:Non-genetic Cohort" + ], + [ + "B6D2", + "Glaucoma and Aged Retina UTHSC", + "Family:Non-genetic Cohort" ], [ "NZBXFVB-N2", - "NZB/FVB N2 NCI" + "NZB/FVB N2 NCI", + "Family:Non-genetic Cohort" ], [ "C57BL-6JxC57BL-6NJF2", - "Reduced Complexity Cross (B6JxB6N F2)" + "Reduced Complexity Cross (B6JxB6N F2)", + "Family:Non-genetic Cohort" ], [ "Retina-RGC-Rheaume", - "Retina RGC Rheaume" + "Retina RGC Rheaume", + "Family:Non-genetic Cohort" ], [ - "SOTNOT-OHSU", - "SOTNOT-OHSU" + "Scripps-2013", + "Scripps C57BL/6J", + "Family:Non-genetic Cohort" + ], + [ + "BXD300", + "BXD300", + "Family:None" ] ], "poplar": [ [ "Poplar", - "Poplar" + "Poplar", + "Family:None" ] ], "rat": [ [ "HXBBXH", - "HXB/BXH" - ], - [ - "HRDP", - "Hybrid Rat Diversity Panel" + "Hybrid Rat Diversity Panel (Includes HXB/BXH)", + "Family:None" ], [ "HSNIH-Palmer", - "NIH Heterogeneous Stock (Palmer)" + "NIH Heterogeneous Stock (Palmer)", + "Family:None" ], [ "HSNIH-RGSMC", - "NIH Heterogeneous Stock (RGSMC 2013)" + "NIH Heterogeneous Stock (RGSMC 2013)", + "Family:None" ], [ "SRxSHRSPF2", - "UIOWA SRxSHRSP F2" + "UIOWA SRxSHRSP F2", + "Family:None" ] ], "soybean": [ [ "J12XJ58F11", - "J12XJ58F11" + "J12XJ58F11", + "Family:None" ], [ "J12XJ58F2", - "J12XJ58F2" + "J12XJ58F2", + "Family:None" ] ], "tomato": [ [ "LXP", - "LXP" + "LXP", + "Family:None" ] ] }, @@ -4481,6 +5856,10 @@ "Phenotypes" ], [ + "Methylation", + "Methylation" + ], + [ "Newborn Cord Blood mRNA", "Newborn Cord Blood mRNA" ] @@ -4493,12 +5872,12 @@ ], "GTEx": [ [ - "Adipose tissue, subcutaneous mRNA", - "Adipose tissue, subcutaneous mRNA" + "Adipose Tissue, Subcutaneous mRNA", + "Adipose Tissue, Subcutaneous mRNA" ], [ - "Adipose tissue, visceral mRNA", - "Adipose tissue, visceral mRNA" + "Adipose Tissue, Visceral mRNA", + "Adipose Tissue, Visceral mRNA" ], [ "Adrenal Gland mRNA", @@ -4687,12 +6066,12 @@ "Phenotypes" ], [ - "Adipose tissue, subcutaneous mRNA", - "Adipose tissue, subcutaneous mRNA" + "Adipose Tissue, Subcutaneous mRNA", + "Adipose Tissue, Subcutaneous mRNA" ], [ - "Adipose tissue, visceral mRNA", - "Adipose tissue, visceral mRNA" + "Adipose Tissue, Visceral mRNA", + "Adipose Tissue, Visceral mRNA" ], [ "Adrenal Gland mRNA", @@ -4899,6 +6278,208 @@ "Whole Blood mRNA" ] ], + "GTEx_v8": [ + [ + "Phenotypes", + "Phenotypes" + ], + [ + "Adipose Tissue, Subcutaneous mRNA", + "Adipose Tissue, Subcutaneous mRNA" + ], + [ + "Adipose Tissue, Visceral mRNA", + "Adipose Tissue, Visceral mRNA" + ], + [ + "Adrenal Gland mRNA", + "Adrenal Gland mRNA" + ], + [ + "Amygdala mRNA", + "Amygdala mRNA" + ], + [ + "Anterior Cingulate Cortex mRNA", + "Anterior Cingulate Cortex mRNA" + ], + [ + "Aorta mRNA", + "Aorta mRNA" + ], + [ + "Breast - Mammary Tissue mRNA", + "Breast - Mammary Tissue mRNA" + ], + [ + "Caudate mRNA", + "Caudate mRNA" + ], + [ + "Cells - EBV-Transformed Lymphocytes mRNA", + "Cells - EBV-Transformed Lymphocytes mRNA" + ], + [ + "Cells - Transformed Fibroblasts mRNA", + "Cells - Transformed Fibroblasts mRNA" + ], + [ + "Cerebellar Cortex mRNA", + "Cerebellar Cortex mRNA" + ], + [ + "Cerebellar Hemisphere mRNA", + "Cerebellar Hemisphere mRNA" + ], + [ + "Cerebellum mRNA", + "Cerebellum mRNA" + ], + [ + "Colon - Sigmoid mRNA", + "Colon - Sigmoid mRNA" + ], + [ + "Colon - Transverse mRNA", + "Colon - Transverse mRNA" + ], + [ + "Coronary mRNA", + "Coronary mRNA" + ], + [ + "Esophagus - Gastroesophageal mRNA", + "Esophagus - Gastroesophageal mRNA" + ], + [ + "Esophagus - Mucosa mRNA", + "Esophagus - Mucosa mRNA" + ], + [ + "Esophagus - Muscularis mRNA", + "Esophagus - Muscularis mRNA" + ], + [ + "Frontal Cortex mRNA", + "Frontal Cortex mRNA" + ], + [ + "Heart - Atrial Appendage mRNA", + "Heart - Atrial Appendage mRNA" + ], + [ + "Heart - Left Ventricle mRNA", + "Heart - Left Ventricle mRNA" + ], + [ + "Hippocampus mRNA", + "Hippocampus mRNA" + ], + [ + "Hypothalamus mRNA", + "Hypothalamus mRNA" + ], + [ + "Kidney mRNA", + "Kidney mRNA" + ], + [ + "Liver mRNA", + "Liver mRNA" + ], + [ + "Lung mRNA", + "Lung mRNA" + ], + [ + "Muscle mRNA", + "Muscle mRNA" + ], + [ + "Nerve - Tibial mRNA", + "Nerve - Tibial mRNA" + ], + [ + "Nucleus Accumbens mRNA", + "Nucleus Accumbens mRNA" + ], + [ + "Ovary mRNA", + "Ovary mRNA" + ], + [ + "Pancreas mRNA", + "Pancreas mRNA" + ], + [ + "Pituitary Gland mRNA", + "Pituitary Gland mRNA" + ], + [ + "Prostate mRNA", + "Prostate mRNA" + ], + [ + "Putamen mRNA", + "Putamen mRNA" + ], + [ + "Salivary Gland mRNA", + "Salivary Gland mRNA" + ], + [ + "Skin - Not Sun Exposed (Suprapubic) mRNA", + "Skin - Not Sun Exposed (Suprapubic) mRNA" + ], + [ + "Skin - Sun Exposed (Lower leg) mRNA", + "Skin - Sun Exposed (Lower leg) mRNA" + ], + [ + "Small Intestine - Terminal Ileum mRNA", + "Small Intestine - Terminal Ileum mRNA" + ], + [ + "Spinal Cord mRNA", + "Spinal Cord mRNA" + ], + [ + "Spleen mRNA", + "Spleen mRNA" + ], + [ + "Stomach mRNA", + "Stomach mRNA" + ], + [ + "Substantia Nigra mRNA", + "Substantia Nigra mRNA" + ], + [ + "Testis mRNA", + "Testis mRNA" + ], + [ + "Thyroid mRNA", + "Thyroid mRNA" + ], + [ + "Tibial mRNA", + "Tibial mRNA" + ], + [ + "Uterus mRNA", + "Uterus mRNA" + ], + [ + "Vagina mRNA", + "Vagina mRNA" + ], + [ + "Whole Blood mRNA", + "Whole Blood mRNA" + ] + ], "HB": [ [ "Cerebellum mRNA", @@ -5009,6 +6590,10 @@ [ "Phenotypes", "Phenotypes" + ], + [ + "Islets mRNA", + "Islets mRNA" ] ], "TIGEM-Retina-RNA-Seq": [ @@ -5023,52 +6608,6 @@ ] }, "mouse": { - "AIL": [ - [ - "Phenotypes", - "Phenotypes" - ], - [ - "Genotypes", - "Genotypes" - ], - [ - "Hippocampus mRNA", - "Hippocampus mRNA" - ], - [ - "Prefrontal Cortex mRNA", - "Prefrontal Cortex mRNA" - ], - [ - "Striatum mRNA", - "Striatum mRNA" - ] - ], - "AIL-LGSM-F34-A": [ - [ - "Phenotypes", - "Phenotypes" - ] - ], - "AIL-LGSM-F34-F39-43-GBS": [ - [ - "Phenotypes", - "Phenotypes" - ] - ], - "AIL-LGSM-F34-GBS": [ - [ - "Phenotypes", - "Phenotypes" - ] - ], - "AIL-LGSM-F39-43-GBS": [ - [ - "Phenotypes", - "Phenotypes" - ] - ], "AKXD": [ [ "Genotypes", @@ -5105,6 +6644,16 @@ "Liver mRNA" ] ], + "B6-Lens": [ + [ + "Phenotypes", + "Phenotypes" + ], + [ + "Ocular Lens mRNA", + "Ocular Lens mRNA" + ] + ], "B6BTBRF2": [ [ "Phenotypes", @@ -5123,6 +6672,14 @@ [ "Phenotypes", "Phenotypes" + ], + [ + "Retina microRNA", + "Retina microRNA" + ], + [ + "Retina mRNA", + "Retina mRNA" ] ], "B6D2F2": [ @@ -5143,6 +6700,10 @@ [ "Genotypes", "Genotypes" + ], + [ + "Muscle mRNA", + "Muscle mRNA" ] ], "B6D2RI": [ @@ -5195,6 +6756,10 @@ [ "Liver mRNA", "Liver mRNA" + ], + [ + "Muscle mRNA", + "Muscle mRNA" ] ], "BHHBF2": [ @@ -5285,6 +6850,10 @@ "Hippocampal Precursor Cells mRNA" ], [ + "Hippocampus microRNA", + "Hippocampus microRNA" + ], + [ "Hippocampus mRNA", "Hippocampus mRNA" ], @@ -5297,6 +6866,14 @@ "Kidney mRNA" ], [ + "Leucocytes mRNA", + "Leucocytes mRNA" + ], + [ + "Liver DNAm", + "Liver DNAm" + ], + [ "Liver Metabolome", "Liver Metabolome" ], @@ -5317,6 +6894,10 @@ "Midbrain mRNA" ], [ + "Muscle Metabolome", + "Muscle Metabolome" + ], + [ "Muscle mRNA", "Muscle mRNA" ], @@ -5325,6 +6906,10 @@ "Neocortex mRNA" ], [ + "Neutrophils mRNA", + "Neutrophils mRNA" + ], + [ "Nucleus Accumbens mRNA", "Nucleus Accumbens mRNA" ], @@ -5333,6 +6918,10 @@ "Pituitary Gland mRNA" ], [ + "Popliteal Lymph Node mRNA", + "Popliteal Lymph Node mRNA" + ], + [ "Prefrontal Cortex mRNA", "Prefrontal Cortex mRNA" ], @@ -5357,6 +6946,10 @@ "T Cell (regulatory) mRNA" ], [ + "Thymus mRNA", + "Thymus mRNA" + ], + [ "Ventral Tegmental Area mRNA", "Ventral Tegmental Area mRNA" ] @@ -5377,12 +6970,20 @@ "Genotypes" ], [ - "Hippocampus mRNA", - "Hippocampus mRNA" + "Hippocampus Proteome", + "Hippocampus Proteome" + ], + [ + "Liver DNAm", + "Liver DNAm" ], [ "Liver mRNA", "Liver mRNA" + ], + [ + "Liver Proteome", + "Liver Proteome" ] ], "BXD300": [ @@ -5431,6 +7032,20 @@ "Genotypes" ] ], + "CC": [ + [ + "Phenotypes", + "Phenotypes" + ], + [ + "Genotypes", + "Genotypes" + ], + [ + "Midbrain mRNA", + "Midbrain mRNA" + ] + ], "CFW": [ [ "Phenotypes", @@ -5471,12 +7086,24 @@ [ "Midbrain mRNA", "Midbrain mRNA" + ], + [ + "Prefrontal Cortex mRNA", + "Prefrontal Cortex mRNA" + ], + [ + "Striatum mRNA", + "Striatum mRNA" ] ], "CMS": [ [ "Phenotypes", "Phenotypes" + ], + [ + "Hippocampus mRNA", + "Hippocampus mRNA" ] ], "CTB6F2": [ @@ -5541,6 +7168,32 @@ "Retina mRNA" ] ], + "DOD-BXD-GWI": [ + [ + "Genotypes", + "Genotypes" + ], + [ + "Prefrontal Cortex mRNA", + "Prefrontal Cortex mRNA" + ] + ], + "EMSR": [ + [ + "Hippocampus mRNA", + "Hippocampus mRNA" + ] + ], + "HET3-ITP": [ + [ + "Phenotypes", + "Phenotypes" + ], + [ + "Genotypes", + "Genotypes" + ] + ], "HS": [ [ "Phenotypes", @@ -5565,6 +7218,54 @@ "Striatum mRNA" ] ], + "JAX-D2-Mono-RNA-Seq": [ + [ + "Retina mRNA", + "Retina mRNA" + ] + ], + "LGSM-AI": [ + [ + "Phenotypes", + "Phenotypes" + ], + [ + "Hippocampus mRNA", + "Hippocampus mRNA" + ], + [ + "Prefrontal Cortex mRNA", + "Prefrontal Cortex mRNA" + ], + [ + "Striatum mRNA", + "Striatum mRNA" + ] + ], + "LGSM-AI-G34-A": [ + [ + "Phenotypes", + "Phenotypes" + ] + ], + "LGSM-AI-G34-GBS": [ + [ + "Phenotypes", + "Phenotypes" + ] + ], + "LGSM-AI-G34_39-43-GBS": [ + [ + "Phenotypes", + "Phenotypes" + ] + ], + "LGSM-AI-G39-43-GBS": [ + [ + "Phenotypes", + "Phenotypes" + ] + ], "LGSM-AIG34_50-56-GBS": [ [ "Phenotypes", @@ -5581,6 +7282,10 @@ "Genotypes" ], [ + "Brain mRNA", + "Brain mRNA" + ], + [ "Hippocampus mRNA", "Hippocampus mRNA" ], @@ -5654,6 +7359,22 @@ "Genotypes", "Genotypes" ] + ], + "Scripps-2013": [ + [ + "Anterior Cingulate Cortex mRNA", + "Anterior Cingulate Cortex mRNA" + ] + ], + "UTHSC-Cannabinoid": [ + [ + "Phenotypes", + "Phenotypes" + ], + [ + "Genotypes", + "Genotypes" + ] ] }, "poplar": { @@ -5665,16 +7386,6 @@ ] }, "rat": { - "HRDP": [ - [ - "Phenotypes", - "Phenotypes" - ], - [ - "Genotypes", - "Genotypes" - ] - ], "HSNIH-Palmer": [ [ "Phenotypes", |