diff options
4 files changed, 15 insertions, 16 deletions
diff --git a/wqflask/wqflask/static/new/javascript/show_trait.js b/wqflask/wqflask/static/new/javascript/show_trait.js index 9e249c28..2fa77ae0 100644 --- a/wqflask/wqflask/static/new/javascript/show_trait.js +++ b/wqflask/wqflask/static/new/javascript/show_trait.js @@ -296,18 +296,17 @@ }; on_corr_method_change = function() { var corr_method; - console.log("in beginning of on_corr_method_change"); - corr_method = $('select[name=corr_method]').val(); + corr_method = $('select[name=corr_type]').val(); console.log("corr_method is:", corr_method); $('.correlation_desc').hide(); $('#' + corr_method + "_r_desc").show().effect("highlight"); if (corr_method === "lit") { - return $("#corr_sample_method_options").hide(); + return $("#corr_sample_method").hide(); } else { - return $("#corr_sample_method_options").show(); + return $("#corr_sample_method").show(); } }; - $('select[name=corr_method]').change(on_corr_method_change); + $('select[name=corr_type]').change(on_corr_method_change); submit_special = function(url) { $("#trait_data_form").attr("action", url); diff --git a/wqflask/wqflask/templates/show_trait_calculate_correlations.html b/wqflask/wqflask/templates/show_trait_calculate_correlations.html index ed58b32c..80fafa5e 100755 --- a/wqflask/wqflask/templates/show_trait_calculate_correlations.html +++ b/wqflask/wqflask/templates/show_trait_calculate_correlations.html @@ -63,7 +63,7 @@ </div> </div> - <div class="form-group"> + <div id="corr_sample_method" class="form-group"> <label for="corr_sample_method" class="col-xs-1 control-label">Type</label> <div class="col-xs-2 controls"> <select name="corr_sample_method" class="form-control"> @@ -112,30 +112,30 @@ <label for="descriptions" class="col-xs-1 control-label"></label> <div class="col-xs-6 controls"> <span id="sample_r_desc" class="correlation_desc fs12"> - The <a href="/correlationAnnotation.html#sample_r" target="_blank">Sample Correlation</a> + The <a href="http://genenetwork.org/correlationAnnotation.html#genetic_r">Sample Correlation</a> is computed between trait data and any other traits in the sample database selected above. Use - <a href="/glossary.html#Correlations" target="_blank">Spearman + <a href="http://www.genenetwork.org/glossary.html#Correlations">Spearman Rank</a> when the sample size is small (<20) or when there are influential outliers. </span> <span id="lit_r_desc" style="display: none;" class="correlation_desc fs12"> - The <a href="/correlationAnnotation.html" target="_blank">Literature Correlation</a> + The <a href="http://genenetwork.org/correlationAnnotation.html#literatureCorr">Literature Correlation</a> (Lit r) between this gene and all other genes is computed<br> - using the <a href="https://grits.eecs.utk.edu/sgo/sgo.html" target="_blank"> + using the <a href="https://grits.eecs.utk.edu/sgo/sgo.html"> Semantic Gene Organizer</a> and human, rat, and mouse data from PubMed. Values are ranked by Lit r, but Sample r and Tissue r are also displayed.<br> - <a href="/glossary.html#Literature" target="_blank">More on using Lit r</a> + <a href="http://genenetwork.org/glossary.html#Literature">More on using Lit r</a> </span> <span id="tissue_r_desc" style="display: none;" class="correlation_desc fs12"> - The <a href="/webqtl/main.py?FormID=tissueCorrelation" target="_blank">Tissue Correlation</a> + The <a href="http://genenetwork.org/webqtl/main.py?FormID=tissueCorrelation">Tissue Correlation</a> (Tissue r) estimates the similarity of expression of two genes or transcripts across different cells, tissues, or organs - (<a href="/correlationAnnotation.html#tissue_r" target="_blank">glossary</a>). + (<a href="http://genenetwork.org/correlationAnnotation.html#tissueCorr">glossary</a>). Tissue correlations are generated by analyzing expression in multiple samples usually taken from single cases.<br> <strong>Pearson</strong> and <strong>Spearman Rank</strong> correlations have been diff --git a/wqflask/wqflask/templates/show_trait_details.html b/wqflask/wqflask/templates/show_trait_details.html index ccb3b51b..95a3b967 100755 --- a/wqflask/wqflask/templates/show_trait_details.html +++ b/wqflask/wqflask/templates/show_trait_details.html @@ -26,7 +26,7 @@ <tr> <td>Database</td> <td> - <a href="{{ url_for('static', filename='dbdoc/' + dataset.fullname + '.html') }}" target="_blank"> + <a href="http://genenetwork.org/dbdoc/{{ dataset.name }}.html"> {{ dataset.fullname }} </a> </td> diff --git a/wqflask/wqflask/templates/show_trait_statistics.html b/wqflask/wqflask/templates/show_trait_statistics.html index 242f1c26..3ee8bdea 100755 --- a/wqflask/wqflask/templates/show_trait_statistics.html +++ b/wqflask/wqflask/templates/show_trait_statistics.html @@ -108,8 +108,8 @@ </div> <div> - More about <a href="http://en.wikipedia.org/wiki/Normal_probability_plot" target="_blank">Normal Probability Plots</a> and more - about interpreting these plots from the <a href="/glossary.html#normal_probability" target="_blank">glossary</a> + More about <a href="http://en.wikipedia.org/wiki/Normal_probability_plot">Normal Probability Plots</a> and more + about interpreting these plots from the <a href="http://genenetwork.org/glossary.html#normal_probability">glossary</a> </div> </div> |