diff options
4 files changed, 377 insertions, 369 deletions
diff --git a/wqflask/wqflask/templates/partial_correlations/pcorrs_error.html b/wqflask/wqflask/templates/partial_correlations/pcorrs_error.html index 36847f57..2bcb5e02 100644 --- a/wqflask/wqflask/templates/partial_correlations/pcorrs_error.html +++ b/wqflask/wqflask/templates/partial_correlations/pcorrs_error.html @@ -3,51 +3,53 @@ {% block content %} <!-- Start of body --> -<div class="col-md-8"> -<div class="form-group has-error"> - <div class="control-label" for="inputError1"> - - <img src="/static/gif/error/{{ error_image }}"> - - <h1>ERROR</h1> - - <p> - This error is not what we wanted to see. Unfortunately errors - are part of all software systems and we need to resolve this - together. - </p> - <p> - <b>It is important to report this ERROR so we can fix it for everyone</b>. - </p> - - <p> - Report to the GeneNetwork team by recording the steps you take - to reproduce this ERROR. Next to those steps, copy-paste below - stack trace, either as - a <a href="https://github.com/genenetwork/genenetwork2/issues/new">new - issue</a> or E-mail this full page to one of the developers - directly. - </p> +<div class="container"> + <div class="col-md-8"> + <div class="form-group has-error"> + <div class="control-label" for="inputError1"> + + <img src="/static/gif/error/{{ error_image }}"> + + <h1>ERROR</h1> + + <p> + This error is not what we wanted to see. Unfortunately errors + are part of all software systems and we need to resolve this + together. + </p> + <p> + <b>It is important to report this ERROR so we can fix it for everyone</b>. + </p> + + <p> + Report to the GeneNetwork team by recording the steps you take + to reproduce this ERROR. Next to those steps, copy-paste below + stack trace, either as + a <a href="https://github.com/genenetwork/genenetwork2/issues/new">new + issue</a> or E-mail this full page to one of the developers + directly. + </p> + </div> + + <p> + (GeneNetwork error: {{message[:128]}}) + </p> + + <p> + To check if this already a known issue, search the + <a href="https://github.com/genenetwork/genenetwork2/issues">issue + tracker</a>. + </p> + + <a href="#Stack" class="btn btn-default" data-toggle="collapse">Toggle full stack trace</a> + <div id="Stack" class="collapse"> + <pre> + GeneNetwork {{ version }} {% for line in stack %} {{ line }} + {% endfor %} + </pre> + </div> + </div> </div> - - <p> - (GeneNetwork error: {{message[:128]}}) - </p> - - <p> - To check if this already a known issue, search the - <a href="https://github.com/genenetwork/genenetwork2/issues">issue - tracker</a>. - </p> - - <a href="#Stack" class="btn btn-default" data-toggle="collapse">Toggle full stack trace</a> - <div id="Stack" class="collapse"> - <pre> - GeneNetwork {{ version }} {% for line in stack %} {{ line }} - {% endfor %} - </pre> - </div> -</div> </div> diff --git a/wqflask/wqflask/templates/partial_correlations/pcorrs_poll_results.html b/wqflask/wqflask/templates/partial_correlations/pcorrs_poll_results.html index 47acc294..05bd4cbd 100644 --- a/wqflask/wqflask/templates/partial_correlations/pcorrs_poll_results.html +++ b/wqflask/wqflask/templates/partial_correlations/pcorrs_poll_results.html @@ -9,7 +9,9 @@ {%block content%} -<p>Computing partial correlations...</p> -<img src="/static/gif/waitAnima2.gif" - alt="Image indicating computation of partial correlations is ongoing" /> +<div class="container"> + <p>Computing partial correlations...</p> + <img src="/static/gif/waitAnima2.gif" + alt="Image indicating computation of partial correlations is ongoing" /> +</div> {%endblock%} diff --git a/wqflask/wqflask/templates/partial_correlations/pcorrs_results_presentation.html b/wqflask/wqflask/templates/partial_correlations/pcorrs_results_presentation.html index c109f24b..53175053 100644 --- a/wqflask/wqflask/templates/partial_correlations/pcorrs_results_presentation.html +++ b/wqflask/wqflask/templates/partial_correlations/pcorrs_results_presentation.html @@ -10,232 +10,234 @@ {%endblock%} {%block content%} -<p> - <strong>Primary Trait</strong><br /><br /> - <a href="{{url_for( - 'show_trait_page', - trait_id=primary['trait_name'], - dataset=primary['dataset_name'])}}" - title="Link to trait data for trait {{primary['trait_name']}}"> - {{primary["dataset_type"]}}/{{primary["trait_name"]}} - [{{primary["symbol"] }} on Chr {{primary["chr"]}} @ {{primary["mb"]}}]: - {{primary["description"]}} - </a> --- FROM: {{primary["dataset_name"]}} -</p> -<p><strong>Control Traits</strong><br /><br /> - {%for trait in controls:%} - <a href="{{url_for( - 'show_trait_page', - trait_id=trait['trait_name'], - dataset=trait['dataset_name'])}}" - title="Link to trait data for trait {{trait['trait_name']}}"> - {{trait["dataset_type"]}}/{{trait["trait_name"]}} - [{{trait["symbol"] }} on Chr {{trait["chr"]}} @ {{trait["mb"]}}]: - {{trait["description"]}} - </a> --- FROM: {{trait["dataset_name"]}}<br /> - {%endfor%} -</p> +<div class="container"> + <p> + <strong>Primary Trait</strong><br /><br /> + <a href="{{url_for( + 'show_trait_page', + trait_id=primary['trait_name'], + dataset=primary['dataset_name'])}}" + title="Link to trait data for trait {{primary['trait_name']}}"> + {{primary["dataset_type"]}}/{{primary["trait_name"]}} + [{{primary["symbol"] }} on Chr {{primary["chr"]}} @ {{primary["mb"]}}]: + {{primary["description"]}} + </a> --- FROM: {{primary["dataset_name"]}} + </p> + <p><strong>Control Traits</strong><br /><br /> + {%for trait in controls:%} + <a href="{{url_for( + 'show_trait_page', + trait_id=trait['trait_name'], + dataset=trait['dataset_name'])}}" + title="Link to trait data for trait {{trait['trait_name']}}"> + {{trait["dataset_type"]}}/{{trait["trait_name"]}} + [{{trait["symbol"] }} on Chr {{trait["chr"]}} @ {{trait["mb"]}}]: + {{trait["description"]}} + </a> --- FROM: {{trait["dataset_name"]}}<br /> + {%endfor%} + </p> -<div id="partial-correlation-results"> - {%if dataset_type == "Publish":%} - <table id="part-corr-results-publish" - class="table-hover table-striped cell-border" - style="float: left;"> - <thead> - <tr> - <th></th> - <th>Index</th> - <th>Record</th> - <th>Phenotype</th> - <th>Authors</th> - <th>Year</th> - <th>N</th> - <th>Partial {%if "spearman" in (method | lower):%}rho{%else:%}r{%endif%}</th> - <th>p(partial {%if "spearman" in (method | lower):%}rho{%else:%}r{%endif%})</th> - <th>{%if "spearman" in (method | lower):%}rho{%else:%}r{%endif%}</th> - <th>p({%if "spearman" in (method | lower):%}rho{%else:%}r{%endif%})</th> - <th>delta {%if "spearman" in (method | lower):%}rho{%else:%}r{%endif%}</th> - </tr> - </thead> + <div id="partial-correlation-results"> + {%if dataset_type == "Publish":%} + <table id="part-corr-results-publish" + class="table-hover table-striped cell-border" + style="float: left;"> + <thead> + <tr> + <th></th> + <th>Index</th> + <th>Record</th> + <th>Phenotype</th> + <th>Authors</th> + <th>Year</th> + <th>N</th> + <th>Partial {%if "spearman" in (method | lower):%}rho{%else:%}r{%endif%}</th> + <th>p(partial {%if "spearman" in (method | lower):%}rho{%else:%}r{%endif%})</th> + <th>{%if "spearman" in (method | lower):%}rho{%else:%}r{%endif%}</th> + <th>p({%if "spearman" in (method | lower):%}rho{%else:%}r{%endif%})</th> + <th>delta {%if "spearman" in (method | lower):%}rho{%else:%}r{%endif%}</th> + </tr> + </thead> - <tbody> - {%for trait in correlations:%} - <tr class="results-row"> - <td></td> - <td data-column-heading="Index"></td> - <td data-column-heading="Record"> - <a href="{{url_for( - 'show_trait_page', - trait_id=trait['trait_name'], - dataset=trait['dataset_name'])}}" - title="Link to trait data for trait {{trait['trait_name']}}"> - {{trait["trait_name"]}} - </a> - </td> - <td data-column-heading="Phenotype"> - {{trait["post_publication_description"]}}</td> - <td data-column-heading="Authors">{{trait["authors"]}}</td> - <td data-column-heading="Year">{{trait["year"]}}</td> - <td data-column-heading="N">{{trait["noverlap"]}}</td> - <td data-column-heading="Partial {%if 'spearman' in (method | lower):%}rho{%else:%}r{%endif%}"> - {{format_number(trait.get("partial_corr"))}} - </td> - <td data-column-heading="p(partial {%if 'spearman' in (method | lower):%}rho{%else:%}r{%endif%})"> - {{format_number(trait.get("partial_corr_p_value"))}} - </td> - <td data-column-heading="{%if 'spearman' in (method | lower):%}rho{%else:%}r{%endif%}"> - {{format_number(trait.get("corr"))}} - </td> - <td data-column-heading="p({%if 'spearman' in (method | lower):%}rho{%else:%}r{%endif%})"> - {{format_number(trait.get("corr_p_value"))}} - </td> - <td data-column-heading="delta {%if 'spearman' in (method | lower):%}rho{%else:%}r{%endif%}"> - {{format_number(trait.get("delta"))}} - </td> - </tr> - {%endfor%} - </tbody> - </table> - {%endif%} + <tbody> + {%for trait in correlations:%} + <tr class="results-row"> + <td></td> + <td data-column-heading="Index"></td> + <td data-column-heading="Record"> + <a href="{{url_for( + 'show_trait_page', + trait_id=trait['trait_name'], + dataset=trait['dataset_name'])}}" + title="Link to trait data for trait {{trait['trait_name']}}"> + {{trait["trait_name"]}} + </a> + </td> + <td data-column-heading="Phenotype"> + {{trait["post_publication_description"]}}</td> + <td data-column-heading="Authors">{{trait["authors"]}}</td> + <td data-column-heading="Year">{{trait["year"]}}</td> + <td data-column-heading="N">{{trait["noverlap"]}}</td> + <td data-column-heading="Partial {%if 'spearman' in (method | lower):%}rho{%else:%}r{%endif%}"> + {{format_number(trait.get("partial_corr"))}} + </td> + <td data-column-heading="p(partial {%if 'spearman' in (method | lower):%}rho{%else:%}r{%endif%})"> + {{format_number(trait.get("partial_corr_p_value"))}} + </td> + <td data-column-heading="{%if 'spearman' in (method | lower):%}rho{%else:%}r{%endif%}"> + {{format_number(trait.get("corr"))}} + </td> + <td data-column-heading="p({%if 'spearman' in (method | lower):%}rho{%else:%}r{%endif%})"> + {{format_number(trait.get("corr_p_value"))}} + </td> + <td data-column-heading="delta {%if 'spearman' in (method | lower):%}rho{%else:%}r{%endif%}"> + {{format_number(trait.get("delta"))}} + </td> + </tr> + {%endfor%} + </tbody> + </table> + {%endif%} - {%if dataset_type == "Geno":%} - <table id="part-corr-results-geno" - class="table-hover table-striped cell-border" - style="float: left;"> - <thead> - <tr> - <th></th> - <th>Index</th> - <th>Locus</th> - <th>Chr</th> - <th>Megabase</th> - <th>N</th> - <th>Partial {%if "spearman" in (method | lower):%}rho{%else:%}r{%endif%}</th> - <th>p(partial {%if "spearman" in (method | lower):%}rho{%else:%}r{%endif%})</th> - <th>{%if "spearman" in (method | lower):%}rho{%else:%}r{%endif%}</th> - <th>p({%if "spearman" in (method | lower):%}rho{%else:%}r{%endif%})</th> - <th>delta {%if "spearman" in (method | lower):%}rho{%else:%}r{%endif%}</th> - </tr> - </thead> + {%if dataset_type == "Geno":%} + <table id="part-corr-results-geno" + class="table-hover table-striped cell-border" + style="float: left;"> + <thead> + <tr> + <th></th> + <th>Index</th> + <th>Locus</th> + <th>Chr</th> + <th>Megabase</th> + <th>N</th> + <th>Partial {%if "spearman" in (method | lower):%}rho{%else:%}r{%endif%}</th> + <th>p(partial {%if "spearman" in (method | lower):%}rho{%else:%}r{%endif%})</th> + <th>{%if "spearman" in (method | lower):%}rho{%else:%}r{%endif%}</th> + <th>p({%if "spearman" in (method | lower):%}rho{%else:%}r{%endif%})</th> + <th>delta {%if "spearman" in (method | lower):%}rho{%else:%}r{%endif%}</th> + </tr> + </thead> - <tbody> - {%for trait in correlations:%} - <tr class="results-row"> - <td></td> - <td data-column-heading="Index"></td> - <td data-column-heading="Locus"> - <a href="{{url_for( - 'show_trait_page', - trait_id=trait['trait_name'], - dataset=trait['dataset_name'])}}" - title="Link to trait data for trait {{trait['trait_name']}}"> - {{trait["trait_name"]}} - </a> - </td> - <td data-column-heading="Chr">{{trait["chr"]}}</td> - <td data-column-heading="Megabase">{{trait["mb"]}}</td> - <td data-column-heading="N">{{trait["noverlap"]}}</td> - <td data-column-heading="Partial {%if 'spearman' in (method | lower):%}rho{%else:%}r{%endif%}"> - {{format_number(trait.get("partial_corr"))}} - </td> - <td data-column-heading="p(partial {%if 'spearman' in (method | lower):%}rho{%else:%}r{%endif%})"> - {{format_number(trait.get("partial_corr_p_value"))}} - </td> - <td data-column-heading="{%if 'spearman' in (method | lower):%}rho{%else:%}r{%endif%}"> - {{format_number(trait.get("corr"))}} - </td> - <td data-column-heading="p({%if 'spearman' in (method | lower):%}rho{%else:%}r{%endif%})"> - {{format_number(trait.get("corr_p_value"))}} - </td> - <td data-column-heading="delta {%if 'spearman' in (method | lower):%}rho{%else:%}r{%endif%}"> - {{format_number(trait.get("delta"))}} - </td> - </tr> - {%endfor%} - </tbody> - </table> - {%endif%} + <tbody> + {%for trait in correlations:%} + <tr class="results-row"> + <td></td> + <td data-column-heading="Index"></td> + <td data-column-heading="Locus"> + <a href="{{url_for( + 'show_trait_page', + trait_id=trait['trait_name'], + dataset=trait['dataset_name'])}}" + title="Link to trait data for trait {{trait['trait_name']}}"> + {{trait["trait_name"]}} + </a> + </td> + <td data-column-heading="Chr">{{trait["chr"]}}</td> + <td data-column-heading="Megabase">{{trait["mb"]}}</td> + <td data-column-heading="N">{{trait["noverlap"]}}</td> + <td data-column-heading="Partial {%if 'spearman' in (method | lower):%}rho{%else:%}r{%endif%}"> + {{format_number(trait.get("partial_corr"))}} + </td> + <td data-column-heading="p(partial {%if 'spearman' in (method | lower):%}rho{%else:%}r{%endif%})"> + {{format_number(trait.get("partial_corr_p_value"))}} + </td> + <td data-column-heading="{%if 'spearman' in (method | lower):%}rho{%else:%}r{%endif%}"> + {{format_number(trait.get("corr"))}} + </td> + <td data-column-heading="p({%if 'spearman' in (method | lower):%}rho{%else:%}r{%endif%})"> + {{format_number(trait.get("corr_p_value"))}} + </td> + <td data-column-heading="delta {%if 'spearman' in (method | lower):%}rho{%else:%}r{%endif%}"> + {{format_number(trait.get("delta"))}} + </td> + </tr> + {%endfor%} + </tbody> + </table> + {%endif%} - {%if dataset_type == "ProbeSet":%} - <table id="part-corr-results-probeset" - class="table-hover table-striped cell-border" - style="float: left;"> - <thead> - <tr> - <th></th> - <th>Index</th> - <th>Record</th> - <th>Gene ID</th> - <th>Homologene ID</th> - <th>Symbol</th> - <th>Description</th> - <th>Chr</th> - <th>Megabase</th> - <th>Mean Expr</th> - <th>N</th> - <th>Sample Partial {%if "spearman" in (method | lower):%}rho{%else:%}r{%endif%}</th> - <th>Sample p(partial {%if "spearman" in (method | lower):%}rho{%else:%}r{%endif%})</th> - <th>Sample {%if "spearman" in (method | lower):%}rho{%else:%}r{%endif%}</th> - <th>Sample p({%if "spearman" in (method | lower):%}rho{%else:%}r{%endif%})</th> - <th>delta {%if "spearman" in (method | lower):%}rho{%else:%}r{%endif%}</th> - <th>Lit Corr</th> - <th>Tissue {%if "spearman" in (method | lower):%}rho{%else:%}r{%endif%}</th> - <th>Tissue p({%if "spearman" in (method | lower):%}rho{%else:%}r{%endif%})</th> - </tr> - </thead> + {%if dataset_type == "ProbeSet":%} + <table id="part-corr-results-probeset" + class="table-hover table-striped cell-border" + style="float: left;"> + <thead> + <tr> + <th></th> + <th>Index</th> + <th>Record</th> + <th>Gene ID</th> + <th>Homologene ID</th> + <th>Symbol</th> + <th>Description</th> + <th>Chr</th> + <th>Megabase</th> + <th>Mean Expr</th> + <th>N</th> + <th>Sample Partial {%if "spearman" in (method | lower):%}rho{%else:%}r{%endif%}</th> + <th>Sample p(partial {%if "spearman" in (method | lower):%}rho{%else:%}r{%endif%})</th> + <th>Sample {%if "spearman" in (method | lower):%}rho{%else:%}r{%endif%}</th> + <th>Sample p({%if "spearman" in (method | lower):%}rho{%else:%}r{%endif%})</th> + <th>delta {%if "spearman" in (method | lower):%}rho{%else:%}r{%endif%}</th> + <th>Lit Corr</th> + <th>Tissue {%if "spearman" in (method | lower):%}rho{%else:%}r{%endif%}</th> + <th>Tissue p({%if "spearman" in (method | lower):%}rho{%else:%}r{%endif%})</th> + </tr> + </thead> - <tbody> - {%for trait in correlations:%} - <tr class="results-row"> - <td></td> - <td data-column-heading="Index"></td> - <td data-column-heading="Record"> - <a href="{{url_for( - 'show_trait_page', - trait_id=trait['trait_name'], - dataset=trait['dataset_name'])}}" - title="Link to trait data for trait {{trait['trait_name']}}"> - {{trait["trait_name"]}} - </a> - </td> - <td data-column-heading="Gene ID">{{trait["geneid"]}}</td> - <td data-column-heading="Homologene ID">{{trait["homologeneid"]}}</td> - <td data-column-heading="Symbol">{{trait["symbol"]}}</td> - <td data-column-heading="Description">{{trait["description"]}}</td> - <td data-column-heading="Chr">{{trait["chr"]}}</td> - <td data-column-heading="Megabase">{{trait["mb"]}}</td> - <td data-column-heading="Mean Expr">{{trait["mean_expr"]}}</td> - <td data-column-heading="N">{{trait["noverlap"]}}</td> - <td data-column-heading="Sample Partial {%if 'spearman' in (method | lower):%}rho{%else:%}r{%endif%}"> - {{format_number(trait.get("partial_corr"))}} - </td> - <td data-column-heading="Sample p(partial {%if 'spearman' in (method | lower):%}rho{%else:%}r{%endif%})"> - {{format_number(trait.get("partial_corr_p_value"))}} - </td> - <td data-column-heading="Sample {%if 'spearman' in (method | lower):%}rho{%else:%}r{%endif%}"> - {{format_number(trait.get("corr"))}} - </td> - <td data-column-heading="Sample p({%if 'spearman' in (method | lower):%}rho{%else:%}r{%endif%})"> - {{format_number(trait.get("corr_p_value"))}} - </td> - <td data-column-heading="delta {%if 'spearman' in (method | lower):%}rho{%else:%}r{%endif%}"> - {{format_number(trait.get("delta"))}} - </td> - <td data-column-heading="Lit Corr"> - {{format_number(trait.get("l_corr"))}} - </td> - <td data-column-heading="Tissue {%if 'spearman' in (method | lower):%}rho{%else:%}r{%endif%}"> - {{format_number(trait.get("tissue_corr"))}} - </td> - <td data-column-heading="Tissue p({%if 'spearman' in (method | lower):%}rho{%else:%}r{%endif%})"> - {{format_number(trait.get("tissue_p_value"))}} - </td> - </tr> - {%endfor%} - </tbody> - </table> - {%endif%} + <tbody> + {%for trait in correlations:%} + <tr class="results-row"> + <td></td> + <td data-column-heading="Index"></td> + <td data-column-heading="Record"> + <a href="{{url_for( + 'show_trait_page', + trait_id=trait['trait_name'], + dataset=trait['dataset_name'])}}" + title="Link to trait data for trait {{trait['trait_name']}}"> + {{trait["trait_name"]}} + </a> + </td> + <td data-column-heading="Gene ID">{{trait["geneid"]}}</td> + <td data-column-heading="Homologene ID">{{trait["homologeneid"]}}</td> + <td data-column-heading="Symbol">{{trait["symbol"]}}</td> + <td data-column-heading="Description">{{trait["description"]}}</td> + <td data-column-heading="Chr">{{trait["chr"]}}</td> + <td data-column-heading="Megabase">{{trait["mb"]}}</td> + <td data-column-heading="Mean Expr">{{trait["mean_expr"]}}</td> + <td data-column-heading="N">{{trait["noverlap"]}}</td> + <td data-column-heading="Sample Partial {%if 'spearman' in (method | lower):%}rho{%else:%}r{%endif%}"> + {{format_number(trait.get("partial_corr"))}} + </td> + <td data-column-heading="Sample p(partial {%if 'spearman' in (method | lower):%}rho{%else:%}r{%endif%})"> + {{format_number(trait.get("partial_corr_p_value"))}} + </td> + <td data-column-heading="Sample {%if 'spearman' in (method | lower):%}rho{%else:%}r{%endif%}"> + {{format_number(trait.get("corr"))}} + </td> + <td data-column-heading="Sample p({%if 'spearman' in (method | lower):%}rho{%else:%}r{%endif%})"> + {{format_number(trait.get("corr_p_value"))}} + </td> + <td data-column-heading="delta {%if 'spearman' in (method | lower):%}rho{%else:%}r{%endif%}"> + {{format_number(trait.get("delta"))}} + </td> + <td data-column-heading="Lit Corr"> + {{format_number(trait.get("l_corr"))}} + </td> + <td data-column-heading="Tissue {%if 'spearman' in (method | lower):%}rho{%else:%}r{%endif%}"> + {{format_number(trait.get("tissue_corr"))}} + </td> + <td data-column-heading="Tissue p({%if 'spearman' in (method | lower):%}rho{%else:%}r{%endif%})"> + {{format_number(trait.get("tissue_p_value"))}} + </td> + </tr> + {%endfor%} + </tbody> + </table> + {%endif%} + </div> </div> {%endblock%} diff --git a/wqflask/wqflask/templates/partial_correlations/pcorrs_select_operations.html b/wqflask/wqflask/templates/partial_correlations/pcorrs_select_operations.html index e541f31b..4b5bc635 100644 --- a/wqflask/wqflask/templates/partial_correlations/pcorrs_select_operations.html +++ b/wqflask/wqflask/templates/partial_correlations/pcorrs_select_operations.html @@ -14,110 +14,111 @@ {%endblock%} {%block content%} -<form id="pcorrs-form" - method="POST" - action="{{url_for('partial_correlations')}}"> - {%with messages = get_flashed_messages(with_categories=true)%} - {%if messages:%} - <ul class=flashes> - {%for category, message in messages:%} - <li class="{{category}}">{{message}}</li> - {%endfor%} - </ul> - {%endif%} - {%endwith%} +<div class="container"> + <form id="pcorrs-form" + method="POST" + action="{{url_for('partial_correlations')}}"> + {%with messages = get_flashed_messages(with_categories=true)%} + {%if messages:%} + <ul class=flashes> + {%for category, message in messages:%} + <li class="{{category}}">{{message}}</li> + {%endfor%} + </ul> + {%endif%} + {%endwith%} - <input type="hidden" value="{{trait_list_str}}" name="trait_list"> - <table id="pcorrs_traits_table" class="table-hover table-striped cell-border"> - <thead> - <tr> - <th>Primary (X)</th> - <th>Controls (Z)</th> - <th>Ignored</th> - <th>Dataset</th> - <th>Trait ID</th> - <th>Symbol</th> - <th>Description</th> - <th>Location</th> - <th>Mean</th> - <th>Max LRS</th> - <th>Max LRS Location Chr and Mb</th> - </tr> - </thead> + <input type="hidden" value="{{trait_list_str}}" name="trait_list"> + <table id="pcorrs_traits_table" class="table-hover table-striped cell-border"> + <thead> + <tr> + <th>Primary (X)</th> + <th>Controls (Z)</th> + <th>Ignored</th> + <th>Dataset</th> + <th>Trait ID</th> + <th>Symbol</th> + <th>Description</th> + <th>Location</th> + <th>Mean</th> + <th>Max LRS</th> + <th>Max LRS Location Chr and Mb</th> + </tr> + </thead> - <tbody> - {%for trait in traits:%} - <tr> - <td> - <input type="radio" name="trait_{{trait['trait_name']}}" - id="trait_{{trait['trait_name']}}" - value="primary_{{trait['trait_name']}}"> - </td> - <td> - <input type="radio" name="trait_{{trait['trait_name']}}" - id="trait_{{trait['trait_name']}}" - value="controls_{{trait['trait_name']}}"> - </td> - <td> - <input type="radio" name="trait_{{trait['trait_name']}}" - id="trait_{{trait['trait_name']}}" - value="ignored_{{trait['trait_name']}}" checked="checked"> - </td> - <td>{{trait.get("dataset", "_")}} - <td>{{trait.get("trait_name", "_")}}</td> - <td>{{trait.get("symbol", "_")}}</td> - <td>{{trait.get("description", "_")}}</td> - <td>{{trait.get("location", "_")}}</td> - <td>{{trait.get("mean", "_")}}</td> - <td>{{trait.get("lrs", "_")}}</td> - <td>{{trait.get("lrs_location", "_")}}</td> - </tr> - {%endfor%} - </tbody> - </table> + <tbody> + {%for trait in traits:%} + <tr> + <td> + <input type="radio" name="trait_{{trait['trait_name']}}" + id="trait_{{trait['trait_name']}}" + value="primary_{{trait['trait_name']}}"> + </td> + <td> + <input type="radio" name="trait_{{trait['trait_name']}}" + id="trait_{{trait['trait_name']}}" + value="controls_{{trait['trait_name']}}"> + </td> + <td> + <input type="radio" name="trait_{{trait['trait_name']}}" + id="trait_{{trait['trait_name']}}" + value="ignored_{{trait['trait_name']}}" checked="checked"> + </td> + <td>{{trait.get("dataset", "_")}} + <td>{{trait.get("trait_name", "_")}}</td> + <td>{{trait.get("symbol", "_")}}</td> + <td>{{trait.get("description", "_")}}</td> + <td>{{trait.get("location", "_")}}</td> + <td>{{trait.get("mean", "_")}}</td> + <td>{{trait.get("lrs", "_")}}</td> + <td>{{trait.get("lrs_location", "_")}}</td> + </tr> + {%endfor%} + </tbody> + </table> - <div class="form-group"> - <label for="corr-method-input" class="form-label">Compute</label> - <select id="corr-method-input" required="required" name="method" - class="form-control"> - <option value="Genetic Correlation, Pearson's r"> - Genetic Correlation, Pearson's r</option> - <option value="Genetic Correlation, Spearman's rho"> - Genetic Correlation, Spearman's rho</option> - <option value="SGO Literature Correlation"> - SGO Literature Correlation</option> - <option value="Tissue Correlation, Pearson's r"> - Tissue Correlation, Pearson's r</option> - <option value="Tissue Correlation, Spearman's rho"> - Tissue Correlation, Spearman's rho</option> - </select> - </div> + <div class="form-group"> + <label for="corr-method-input" class="form-label">Compute</label> + <select id="corr-method-input" required="required" name="method" + class="form-control"> + <option value="Genetic Correlation, Pearson's r"> + Genetic Correlation, Pearson's r</option> + <option value="Genetic Correlation, Spearman's rho"> + Genetic Correlation, Spearman's rho</option> + <option value="SGO Literature Correlation"> + SGO Literature Correlation</option> + <option value="Tissue Correlation, Pearson's r"> + Tissue Correlation, Pearson's r</option> + <option value="Tissue Correlation, Spearman's rho"> + Tissue Correlation, Spearman's rho</option> + </select> + </div> - <div class="form-group"> - <label for="target-db-input" class="form-label">Choose Database</label> - <select id="target-db-input" required="required" name="target_db" - class="form-control"> - {%if target_dbs:%} - {%for item in target_dbs:%} - {%if "description" in item.keys():%} - <option value="{{item['value']}}">{{item['description']}}</option> - {%else:%} - {%for group, opts in item.items()%} - {%if opts | length > 0:%} - <optgroup label="{{group}} ------"> - {%for item2 in opts:%} - <option value="{{item2['value']}}">{{item2['description']}}</option> + <div class="form-group"> + <label for="target-db-input" class="form-label">Choose Database</label> + <select id="target-db-input" required="required" name="target_db" + class="form-control"> + {%if target_dbs:%} + {%for item in target_dbs:%} + {%if "description" in item.keys():%} + <option value="{{item['value']}}">{{item['description']}}</option> + {%else:%} + {%for group, opts in item.items()%} + {%if opts | length > 0:%} + <optgroup label="{{group}} ------"> + {%for item2 in opts:%} + <option value="{{item2['value']}}">{{item2['description']}}</option> + {%endfor%} + </optgroup> + {%endif%} {%endfor%} - </optgroup> - {%endif%} - {%endfor%} - {%endif%} - {%endfor%} - {%endif%} - </select> - </div> + {%endif%} + {%endfor%} + {%endif%} + </select> + </div> - <div class="form-group"> + <div class="form-group"> <label for="criteria-input" class="form-label">Return</label> <select id="criteria-input" required="required" name="criteria" size="1" class="form-control"> @@ -133,11 +134,12 @@ </select> </div> - <button type="submit" class="btn btn-primary" name="submit" - value="Run Partial Correlations"> - Run Partial Correlations - </button> -</form> + <button type="submit" class="btn btn-primary" name="submit" + value="Run Partial Correlations"> + Run Partial Correlations + </button> + </form> +</div> {%endblock%} {%block js%} |