diff options
| -rwxr-xr-x | bin/genenetwork2 | 12 |
1 files changed, 7 insertions, 5 deletions
diff --git a/bin/genenetwork2 b/bin/genenetwork2 index 889401fd..d7d1c325 100755 --- a/bin/genenetwork2 +++ b/bin/genenetwork2 @@ -54,22 +54,24 @@ echo WQFLASK_OVERRIDES=$overrides # ---- Checks and balances if [ -z $GUIX_ETC ]; then if [ -z $GN2_PROFILE ] ; then - echo "WARNING: GN2_PROFILE has not been set - I hope you know what you are doing" + echo "WARNING: GN2_PROFILE has not been set - I hope you know what you are doing!" else + export PATH=$GN2_PROFILE/bin:$PATH export PYTHONPATH=$GN2_PROFILE/lib/python2.7/site-packages export R_LIBS_SITE=$GN2_PROFILE/site-library export GUIX_GTK3_PATH="$GN2_PROFILE/lib/gtk-3.0" export GI_TYPELIB_PATH="$GN2_PROFILE/lib/girepository-1.0" export XDG_DATA_DIRS="$GN2_PROFILE/share" export GIO_EXTRA_MODULES="$GN2_PROFILE/lib/gio/modules" + export LC_ALL=C fi if [ -z $PYTHONPATH ] ; then - echo "WARNING PYTHONPATH has not been set" + echo "WARNING PYTHONPATH has not been set - use GN2_PROFILE!" fi if [ ! -d $R_LIBS_SITE ] ; then - echo "ERROR: R_LIBS_SITE has not been set correctly (we only allow one path)" - echo "Paste in the output of, for example," - echo "guix package -p /usr/local/guix-profiles/gn2-staging --search-paths" + echo "ERROR: R_LIBS_SITE has not been set correctly (we only allow one path) - use GN2_PROFILE!" + echo "Paste into your shell the output of (for example)" + echo "guix package -p \$GN2_PROFILE --search-paths" exit 1 fi fi |