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-rwxr-xr-xwqflask/cfg/default_settings.py2
-rwxr-xr-xwqflask/runserver.py1
-rwxr-xr-xwqflask/wqflask/static/new/packages/DataTables/css/jquery.dataTables.css1
-rwxr-xr-xwqflask/wqflask/templates/marker_regression.html251
-rwxr-xr-xwqflask/wqflask/templates/search_result_page.html15
-rwxr-xr-xwqflask/wqflask/templates/show_trait_edit_data.html2
6 files changed, 138 insertions, 134 deletions
diff --git a/wqflask/cfg/default_settings.py b/wqflask/cfg/default_settings.py
index c9d2a934..8fca3d77 100755
--- a/wqflask/cfg/default_settings.py
+++ b/wqflask/cfg/default_settings.py
@@ -1,7 +1,5 @@
LOGFILE = """/tmp/flask_gn_log"""
-SERVER_PORT = 5002
-
#This is needed because Flask turns key errors into a
#400 bad request response with no exception/log
TRAP_BAD_REQUEST_ERRORS = True
diff --git a/wqflask/runserver.py b/wqflask/runserver.py
index 1cf38f8e..8ab88580 100755
--- a/wqflask/runserver.py
+++ b/wqflask/runserver.py
@@ -28,6 +28,7 @@ import logging_tree
logging_tree.printout()
app.run(host='0.0.0.0',
+ port=5002,
use_debugger=False,
threaded=True,
use_reloader=True)
diff --git a/wqflask/wqflask/static/new/packages/DataTables/css/jquery.dataTables.css b/wqflask/wqflask/static/new/packages/DataTables/css/jquery.dataTables.css
index 68d5e4fa..7a674d3a 100755
--- a/wqflask/wqflask/static/new/packages/DataTables/css/jquery.dataTables.css
+++ b/wqflask/wqflask/static/new/packages/DataTables/css/jquery.dataTables.css
@@ -50,6 +50,7 @@ table.dataTable tr.outlier td{ background-color: #FFFF00; }
.dataTables_wrapper {
position: relative;
clear: both;
+ float: left;
*zoom: 1;
}
diff --git a/wqflask/wqflask/templates/marker_regression.html b/wqflask/wqflask/templates/marker_regression.html
index 2c8f42a1..6aed69d5 100755
--- a/wqflask/wqflask/templates/marker_regression.html
+++ b/wqflask/wqflask/templates/marker_regression.html
@@ -1,127 +1,126 @@
-{% extends "base.html" %}
-{% block title %}Interval Mapping{% endblock %}
-{% block css %}
-<!-- <link rel="stylesheet" type="text/css" href="/static/new/css/interval_mapping.css" />-->
- <link rel="stylesheet" type="text/css" href="/static/new/packages/DataTables/css/jquery.dataTables.css" />
- <link rel="stylesheet" type="text/css" href="/static/packages/DT_bootstrap/DT_bootstrap.css" />
- <link rel="stylesheet" type="text/css" href="/static/packages/TableTools/media/css/TableTools.css" />
- <link rel="stylesheet" type="text/css" href="/static/new/css/d3-tip.min.css" />
- <link rel="stylesheet" type="text/css" href="/static/new/css/panelutil.css" />
-{% endblock %}
-{% block content %} <!-- Start of body -->
-
- {{ header("Mapping",
- '{}: {}'.format(this_trait.name, this_trait.description_fmt)) }}
-
- <div class="container">
- <div>
- <h2>
- Whole Genome Mapping
- </h2>
- <form style ='float: left; padding: 5px;' id="exportform" action="export" method="post">
- <input type="hidden" id="data" name="data" value="">
- <input type="hidden" id="filename" name="filename" value="">
- <input type="submit" id="export" value="Download SVG">
- </form>
- <form style ='float: left; padding: 5px;' id="exportpdfform" action="export_pdf" method="post">
- <input type="hidden" id="data" name="data" value="">
- <input type="hidden" id="filename" name="filename" value="">
- <input type="submit" id="export_pdf" value="Download PDF">
- </form>
-<!-- <button id="export_pdf" class="btn">Export PDF</button>-->
- </div>
- <div id="chart_container">
- <div class="qtlcharts" id="topchart">
-
- </div>
- </div>
- <div>
- <h2>
- Results
- </h2>
- </div>
- <table cellpadding="0" cellspacing="0" border="0" id="qtl_results" class="table table-hover table-striped table-bordered">
- <thead>
- <tr>
- <td>Index</td>
- <td>LOD Score</td>
- <td>Chr</td>
- <td>Mb</td>
- <td>Locus</td>
- </tr>
- </thead>
- <tbody>
- {% for marker in filtered_markers %}
- {% if marker.lod_score > lod_cutoff %}
- <tr>
- <td>{{loop.index}}</td>
- <td>{{marker.lod_score}}</td>
- <td>{{marker.chr}}</td>
- <td>{{marker.Mb}}</td>
- <td>{{marker.name}}</td>
- </tr>
- {% endif %}
- {% endfor %}
- </tbody>
- </table>
-
- </div>
-
- <!-- End of body -->
-
-{% endblock %}
-
-{% block js %}
- <script>
- js_data = {{ js_data | safe }}
- </script>
-
- <!--[if lt IE 9]>
-<!-- <script language="javascript" type="text/javascript" src="/static/packages/jqplot/excanvas.js"></script>-->
- <![endif]-->
- <script language="javascript" type="text/javascript" src="http://d3js.org/d3.v3.min.js"></script>
- <script language="javascript" type="text/javascript" src="/static/new/js_external/d3-tip.min.js"></script>
-<!-- <script language="javascript" type="text/javascript" src="/static/new/packages/jsPDF/jspdf.js"></script>
- <script language="javascript" type="text/javascript" src="/static/new/packages/jsPDF/libs/FileSaver.js/FileSaver.js"></script>
- <script language="javascript" type="text/javascript" src="/static/new/packages/jsPDF/libs/Blob.js/BlobBuilder.js"></script>
- <script language="javascript" type="text/javascript" src="/static/new/packages/jsPDF/jspdf.plugin.standard_fonts_metrics.js"></script>
- <script language="javascript" type="text/javascript" src="/static/new/packages/jsPDF/jspdf.plugin.from_html.js"></script>-->
- <script language="javascript" type="text/javascript" src="/static/new/javascript/panelutil.js"></script>
- <script language="javascript" type="text/javascript" src="/static/new/javascript/chr_lod_chart.js"></script>
-<!-- <script language="javascript" type="text/javascript" src="/static/new/javascript/manhattan_plot.js"></script>-->
- <script language="javascript" type="text/javascript" src="/static/new/javascript/lod_chart.js"></script>
- <script language="javascript" type="text/javascript" src="/static/new/javascript/create_lodchart.js"></script>
- <script language="javascript" type="text/javascript" src="/static/new/packages/DataTables/js/jquery.js"></script>
- <script language="javascript" type="text/javascript" src="/static/new/packages/DataTables/js/jquery.dataTables.min.js"></script>
- <script language="javascript" type="text/javascript" src="/static/new/packages/DataTables/js/dataTables.scientific.js"></script>
- <script language="javascript" type="text/javascript" src="/static/packages/DT_bootstrap/DT_bootstrap.js"></script>
- <script language="javascript" type="text/javascript" src="/static/packages/TableTools/media/js/TableTools.min.js"></script>
- <script language="javascript" type="text/javascript" src="/static/packages/underscore/underscore-min.js"></script>
-
- <script type="text/javascript" charset="utf-8">
- $(document).ready( function () {
- console.time("Creating table");
- $('#qtl_results').dataTable( {
- //"sDom": "<<'span3'l><'span3'T><'span4'f>'row-fluid'r>t<'row-fluid'<'span6'i><'span6'p>>",
- "sDom": "lTftipr",
- "oTableTools": {
- "aButtons": [
- "copy",
- "print",
- {
- "sExtends": "collection",
- "sButtonText": 'Save <span class="caret" />',
- "aButtons": [ "csv", "xls", "pdf" ]
- }
- ],
- "sSwfPath": "/static/packages/TableTools/media/swf/copy_csv_xls_pdf.swf"
- },
- "iDisplayLength": 50,
- "bLengthChange": true,
- "bDeferRender": true,
- "bSortClasses": false
- } );
- console.timeEnd("Creating table");
- });
- </script>
+{% extends "base.html" %}
+{% block title %}Interval Mapping{% endblock %}
+{% block css %}
+<!-- <link rel="stylesheet" type="text/css" href="/static/new/css/interval_mapping.css" />-->
+ <link rel="stylesheet" type="text/css" href="/static/new/packages/DataTables/css/jquery.dataTables.css" />
+ <link rel="stylesheet" type="text/css" href="/static/packages/DT_bootstrap/DT_bootstrap.css" />
+ <link rel="stylesheet" type="text/css" href="/static/packages/TableTools/media/css/TableTools.css" />
+ <link rel="stylesheet" type="text/css" href="/static/new/css/d3-tip.min.css" />
+ <link rel="stylesheet" type="text/css" href="/static/new/css/panelutil.css" />
+{% endblock %}
+{% block content %} <!-- Start of body -->
+
+ {{ header("Mapping",
+ '{}: {}'.format(this_trait.name, this_trait.description_fmt)) }}
+
+ <div class="container">
+ <div>
+ <h2>
+ Whole Genome Mapping
+ </h2>
+ <form style ='float: left; padding: 5px;' id="exportform" action="export" method="post">
+ <input type="hidden" id="data" name="data" value="">
+ <input type="hidden" id="filename" name="filename" value="">
+ <input type="submit" id="export" value="Download SVG">
+ </form>
+ <form style ='float: left; padding: 5px;' id="exportpdfform" action="export_pdf" method="post">
+ <input type="hidden" id="data" name="data" value="">
+ <input type="hidden" id="filename" name="filename" value="">
+ <input type="submit" id="export_pdf" value="Download PDF">
+ </form>
+<!-- <button id="export_pdf" class="btn">Export PDF</button>-->
+ </div>
+ <div id="chart_container">
+ <div class="qtlcharts" id="topchart">
+
+ </div>
+ </div>
+ <div>
+ <h2>
+ Results
+ </h2>
+ <table cellpadding="0" cellspacing="0" border="0" id="qtl_results" class="table table-hover table-striped table-bordered">
+ <thead>
+ <tr>
+ <td>Index</td>
+ <td>LOD Score</td>
+ <td>Chr</td>
+ <td>Mb</td>
+ <td>Locus</td>
+ </tr>
+ </thead>
+ <tbody>
+ {% for marker in filtered_markers %}
+ {% if marker.lod_score > lod_cutoff %}
+ <tr>
+ <td>{{loop.index}}</td>
+ <td>{{marker.lod_score}}</td>
+ <td>{{marker.chr}}</td>
+ <td>{{marker.Mb}}</td>
+ <td>{{marker.name}}</td>
+ </tr>
+ {% endif %}
+ {% endfor %}
+ </tbody>
+ </table>
+ </div>
+ </div>
+
+ <!-- End of body -->
+
+{% endblock %}
+
+{% block js %}
+ <script>
+ js_data = {{ js_data | safe }}
+ </script>
+
+ <!--[if lt IE 9]>
+<!-- <script language="javascript" type="text/javascript" src="/static/packages/jqplot/excanvas.js"></script>-->
+ <![endif]-->
+ <script language="javascript" type="text/javascript" src="http://d3js.org/d3.v3.min.js"></script>
+ <script language="javascript" type="text/javascript" src="/static/new/js_external/d3-tip.min.js"></script>
+<!-- <script language="javascript" type="text/javascript" src="/static/new/packages/jsPDF/jspdf.js"></script>
+ <script language="javascript" type="text/javascript" src="/static/new/packages/jsPDF/libs/FileSaver.js/FileSaver.js"></script>
+ <script language="javascript" type="text/javascript" src="/static/new/packages/jsPDF/libs/Blob.js/BlobBuilder.js"></script>
+ <script language="javascript" type="text/javascript" src="/static/new/packages/jsPDF/jspdf.plugin.standard_fonts_metrics.js"></script>
+ <script language="javascript" type="text/javascript" src="/static/new/packages/jsPDF/jspdf.plugin.from_html.js"></script>-->
+ <script language="javascript" type="text/javascript" src="/static/new/javascript/panelutil.js"></script>
+ <script language="javascript" type="text/javascript" src="/static/new/javascript/chr_lod_chart.js"></script>
+<!-- <script language="javascript" type="text/javascript" src="/static/new/javascript/manhattan_plot.js"></script>-->
+ <script language="javascript" type="text/javascript" src="/static/new/javascript/lod_chart.js"></script>
+ <script language="javascript" type="text/javascript" src="/static/new/javascript/create_lodchart.js"></script>
+ <script language="javascript" type="text/javascript" src="/static/new/packages/DataTables/js/jquery.js"></script>
+ <script language="javascript" type="text/javascript" src="/static/new/packages/DataTables/js/jquery.dataTables.min.js"></script>
+ <script language="javascript" type="text/javascript" src="/static/new/packages/DataTables/js/dataTables.scientific.js"></script>
+ <script language="javascript" type="text/javascript" src="/static/packages/DT_bootstrap/DT_bootstrap.js"></script>
+ <script language="javascript" type="text/javascript" src="/static/packages/TableTools/media/js/TableTools.min.js"></script>
+ <script language="javascript" type="text/javascript" src="/static/packages/underscore/underscore-min.js"></script>
+
+ <script type="text/javascript" charset="utf-8">
+ $(document).ready( function () {
+ console.time("Creating table");
+ $('#qtl_results').dataTable( {
+ //"sDom": "<<'span3'l><'span3'T><'span4'f>'row-fluid'r>t<'row-fluid'<'span6'i><'span6'p>>",
+ "sDom": "lTftipr",
+ "oTableTools": {
+ "aButtons": [
+ "copy",
+ "print",
+ {
+ "sExtends": "collection",
+ "sButtonText": 'Save <span class="caret" />',
+ "aButtons": [ "csv", "xls", "pdf" ]
+ }
+ ],
+ "sSwfPath": "/static/packages/TableTools/media/swf/copy_csv_xls_pdf.swf"
+ },
+ "iDisplayLength": 50,
+ "bLengthChange": true,
+ "bDeferRender": true,
+ "bSortClasses": false
+ } );
+ console.timeEnd("Creating table");
+ });
+ </script>
{% endblock %} \ No newline at end of file
diff --git a/wqflask/wqflask/templates/search_result_page.html b/wqflask/wqflask/templates/search_result_page.html
index 0baac2d3..286ead6c 100755
--- a/wqflask/wqflask/templates/search_result_page.html
+++ b/wqflask/wqflask/templates/search_result_page.html
@@ -84,12 +84,15 @@
<br />
<br />
-
- <button class="btn" id="select_all"><i class="icon-ok"></i> Select All</button>
- <button class="btn" id="deselect_all"><i class="icon-remove"></i> Deselect All</button>
- <button class="btn" id="invert"><i class="icon-resize-vertical"></i> Invert</button>
- <button class="btn" id="add"><i class="icon-plus-sign"></i> Add</button>
- <button class="btn btn-primary pull-right"><i class="icon-download icon-white"></i> Download Table</button>
+ <br />
+
+ <div style="clear:both">
+ <button class="btn" id="select_all"><i class="icon-ok"></i> Select All</button>
+ <button class="btn" id="deselect_all"><i class="icon-remove"></i> Deselect All</button>
+ <button class="btn" id="invert"><i class="icon-resize-vertical"></i> Invert</button>
+ <button class="btn" id="add"><i class="icon-plus-sign"></i> Add</button>
+ <button class="btn btn-primary pull-right"><i class="icon-download icon-white"></i> Download Table</button>
+ </div>
</div>
</div>
diff --git a/wqflask/wqflask/templates/show_trait_edit_data.html b/wqflask/wqflask/templates/show_trait_edit_data.html
index e7df3b13..5d6346ca 100755
--- a/wqflask/wqflask/templates/show_trait_edit_data.html
+++ b/wqflask/wqflask/templates/show_trait_edit_data.html
@@ -119,6 +119,7 @@
{# Todo: Add IDs #}
<td class="column_name-Value">
<input type="text" data-value="{{ sample.display_value }}" name="{{ 'value:' + sample.name }}"
+ style="text-align:right;"
class="trait_value_input edit_sample_value"
value="{{ sample.display_value }}"
size=8 maxlength=8
@@ -133,6 +134,7 @@
{# Todo: Add IDs #}
<td class="column_name-SE">
<input type="text" data-value="{{ sample.display_variance }}" name="{{ 'variance:' + sample.name}}"
+ style="text-align:right;"
class="trait_value_input edit_sample_se"
value="{{ sample.display_variance }}"
size=8 maxlength=8
generated by cgit v1.2.3 (git 2.44.0) at 2024-11-22 14:08:21 +0000