diff options
| -rw-r--r-- | wqflask/wqflask/marker_regression/run_mapping.py | 18 |
1 files changed, 9 insertions, 9 deletions
diff --git a/wqflask/wqflask/marker_regression/run_mapping.py b/wqflask/wqflask/marker_regression/run_mapping.py index 891fcc66..38f8c26d 100644 --- a/wqflask/wqflask/marker_regression/run_mapping.py +++ b/wqflask/wqflask/marker_regression/run_mapping.py @@ -138,15 +138,15 @@ class RunMapping(object): mapping_results_filename = self.dataset.group.name + "_" + ''.join(random.choice(string.ascii_uppercase + string.digits) for _ in range(6)) self.mapping_results_path = "{}{}.csv".format(webqtlConfig.GENERATED_IMAGE_DIR, mapping_results_filename) - if start_vars['manhattan_plot']: - self.color_scheme = "alternating" - if "color_scheme" in start_vars: - self.color_scheme = start_vars['color_scheme'] - if self.color_scheme == "single": - self.manhattan_single_color = start_vars['manhattan_single_color'] - self.manhattan_plot = True - else: - self.manhattan_plot = False + self.manhattan_plot = False + if 'manhattan_plot' in start_vars: + if start_vars['manhattan_plot'].lower() != "false": + self.color_scheme = "alternating" + if "color_scheme" in start_vars: + self.color_scheme = start_vars['color_scheme'] + if self.color_scheme == "single": + self.manhattan_single_color = start_vars['manhattan_single_color'] + self.manhattan_plot = True self.maf = start_vars['maf'] # Minor allele frequency if "use_loco" in start_vars: |