diff options
| -rw-r--r-- | wqflask/wqflask/marker_regression/gemma_mapping.py | 4 |
1 files changed, 2 insertions, 2 deletions
diff --git a/wqflask/wqflask/marker_regression/gemma_mapping.py b/wqflask/wqflask/marker_regression/gemma_mapping.py index b858b573..68a8d5ba 100644 --- a/wqflask/wqflask/marker_regression/gemma_mapping.py +++ b/wqflask/wqflask/marker_regression/gemma_mapping.py @@ -218,9 +218,9 @@ def parse_loco_output(this_dataset, gwa_output_filename): marker['chr'] = int(line.split("\t")[0][3:]) else: marker['chr'] = int(line.split("\t")[0]) - if marker['chr'] > previous_chr: + if marker['chr'] > int(previous_chr): previous_chr = marker['chr'] - elif marker['chr'] < previous_chr: + elif marker['chr'] < int(previous_chr): break else: marker['chr'] = line.split("\t")[0] |