diff options
| -rw-r--r-- | doc/README.org | 6 | ||||
| -rw-r--r-- | etc/default_settings.py | 10 | ||||
| -rwxr-xr-x | scripts/run_debug.sh | 20 | ||||
| -rw-r--r-- | wqflask/base/data_set.py | 44 | ||||
| -rw-r--r-- | wqflask/wqflask/__init__.py | 4 | ||||
| -rw-r--r-- | wqflask/wqflask/api/gen_menu.py | 18 | ||||
| -rw-r--r-- | wqflask/wqflask/collect.py | 2 | ||||
| -rw-r--r-- | wqflask/wqflask/static/new/javascript/dataset_menu_structure.json | 5799 | ||||
| -rw-r--r-- | wqflask/wqflask/static/new/javascript/dataset_select_menu_orig.js | 1 | ||||
| -rw-r--r-- | wqflask/wqflask/templates/base.html | 2 | ||||
| -rw-r--r-- | wqflask/wqflask/user_manager.py | 3 | ||||
| -rw-r--r-- | wqflask/wqflask/user_session.py | 21 | ||||
| -rw-r--r-- | wqflask/wqflask/views.py | 1 |
13 files changed, 83 insertions, 5848 deletions
diff --git a/doc/README.org b/doc/README.org index b0f1c56b..c1b1c2b6 100644 --- a/doc/README.org +++ b/doc/README.org @@ -57,6 +57,12 @@ or you can set environment variables to override individual parameters, e.g. the debug and logging switches can be particularly useful when developing GN2. +* Running Redis + +Install redis. Make sure you add the setting: + +: appendonly yes + * Run MariaDB server ** Install MariaDB with GNU GUIx diff --git a/etc/default_settings.py b/etc/default_settings.py index 64a78686..f368237b 100644 --- a/etc/default_settings.py +++ b/etc/default_settings.py @@ -32,7 +32,7 @@ GN_SERVER_URL = "http://localhost:8880/" # REST API server SQL_URI = "mysql://gn2:mysql_password@localhost/db_webqtl_s" SQL_ALCHEMY_POOL_RECYCLE = 3600 GN_SERVER_URL = "http://localhost:8880/" # REST API server -GN2_BASE_URL = "http://genenetwork.org/" +GN2_BASE_URL = "http://genenetwork.org/" # to pick up REST API GN2_BRANCH_URL = GN2_BASE_URL # ---- Flask configuration (see website) @@ -44,7 +44,13 @@ SECURITY_RECOVERABLE = True SECURITY_EMAIL_SENDER = "no-reply@genenetwork.org" SECURITY_POST_LOGIN_VIEW = "/thank_you" -SERVER_PORT = 5003 # running on localhost +# ---- SERVER_PORT needs an override before firing up the server +SERVER_PORT = os.environ['SERVER_PORT'] +if isinstance(SERVER_PORT, str): + SERVER_PORT = int(SERVER_PORT) # don't do this for other settings! +else: + SERVER_PORT = 5003 + SECRET_HMAC_CODE = '\x08\xdf\xfa\x93N\x80\xd9\\H@\\\x9f`\x98d^\xb4a;\xc6OM\x946a\xbc\xfc\x80:*\xebc' GITHUB_CLIENT_ID = "UNKNOWN" diff --git a/scripts/run_debug.sh b/scripts/run_debug.sh new file mode 100755 index 00000000..be7ecdb8 --- /dev/null +++ b/scripts/run_debug.sh @@ -0,0 +1,20 @@ +#! /bin/bash +# +# PLEASE DO NOT CHANGE THIS FILE - copy it elsewhere to run +# +# Run with GN2_PROFILE and SERVER_PORT overrides, e.g. +# +# env GN2_PROFILE=/usr/local/guix-profiles/gn-latest SERVER_PORT=5010 scripts/run_debug.sh + +[ -z $GN2_PROFILE ] && export GN2_PROFILE=/usr/local/guix-profiles/gn-latest +[ -z $SERVER_PORT ] && export SERVER_PORT=5010 + +echo Running on port $SERVER_PORT from $GN2_PROFILE + +cwd=`pwd` +echo Running source from $cwd + +mkdir -p ~/tmp + +env TMPDIR=~/tmp WEBSERVER_MODE=DEBUG LOG_LEVEL=DEBUG GENENETWORK_FILES=/export/data/genenetwork/genotype_files/ SQL_URI=mysql://webqtlout:webqtlout@localhost/db_webqtl ./bin/genenetwork2 etc/default_settings.py -gunicorn-dev + diff --git a/wqflask/base/data_set.py b/wqflask/base/data_set.py index 1f99df49..cab708ef 100644 --- a/wqflask/base/data_set.py +++ b/wqflask/base/data_set.py @@ -93,22 +93,29 @@ Publish or ProbeSet. E.g. """ self.datasets = {} - data = json.loads(requests.get(GN2_BASE_URL + "/api/v_pre1/gen_dropdown").content) - #data = gen_menu.gen_dropdown_json() - - - for species in data['datasets']: - for group in data['datasets'][species]: - for dataset_type in data['datasets'][species][group]: - for dataset in data['datasets'][species][group][dataset_type]: - short_dataset_name = dataset[1] - if dataset_type == "Phenotypes": - new_type = "Publish" - elif dataset_type == "Genotypes": - new_type = "Geno" - else: - new_type = "ProbeSet" - self.datasets[short_dataset_name] = new_type + + data = Redis.get("dataset_structure") + if data: + self.datasets = json.loads(data) + else: #ZS: I don't think this should ever run unless Redis is emptied + try: + data = json.loads(requests.get(GN2_BASE_URL + "/api/v_pre1/gen_dropdown", timeout = 5).content) + for species in data['datasets']: + for group in data['datasets'][species]: + for dataset_type in data['datasets'][species][group]: + for dataset in data['datasets'][species][group][dataset_type]: + short_dataset_name = dataset[1] + if dataset_type == "Phenotypes": + new_type = "Publish" + elif dataset_type == "Genotypes": + new_type = "Geno" + else: + new_type = "ProbeSet" + self.datasets[short_dataset_name] = new_type + except: + pass + + Redis.set("dataset_structure", json.dumps(self.datasets)) # Set LOG_LEVEL_DEBUG=5 to see the following: logger.debugf(5, "datasets",self.datasets) @@ -127,6 +134,7 @@ Publish or ProbeSet. E.g. results = g.db.execute(geno_query).fetchall() if len(results): self.datasets[name] = "ProbeSet" + Redis.set("dataset_structure", json.dumps(self.datasets)) return self.datasets[name] group_name = name.replace("Publish", "") @@ -140,6 +148,7 @@ Publish or ProbeSet. E.g. results = g.db.execute(pheno_query).fetchall() if len(results): self.datasets[name] = "Publish" + Redis.set("dataset_structure", json.dumps(self.datasets)) return self.datasets[name] #ZS: For when there isn't an InfoFiles ID; not sure if this and the preceding query are both necessary @@ -151,6 +160,7 @@ Publish or ProbeSet. E.g. results = g.db.execute(other_pheno_query).fetchall() if len(results): self.datasets[name] = "Publish" + Redis.set("dataset_structure", json.dumps(self.datasets)) return self.datasets[name] geno_query = """ @@ -166,11 +176,11 @@ Publish or ProbeSet. E.g. results = g.db.execute(geno_query).fetchall() if len(results): self.datasets[name] = "Geno" + Redis.set("dataset_structure", json.dumps(self.datasets)) return self.datasets[name] #ZS: It shouldn't ever reach this return None - else: return self.datasets[name] diff --git a/wqflask/wqflask/__init__.py b/wqflask/wqflask/__init__.py index 399e794d..62e98b36 100644 --- a/wqflask/wqflask/__init__.py +++ b/wqflask/wqflask/__init__.py @@ -21,5 +21,5 @@ app.jinja_env.globals.update( numify = formatting.numify ) -import wqflask.views -from wqflask.api import router
\ No newline at end of file +from wqflask.api import router +import wqflask.views
\ No newline at end of file diff --git a/wqflask/wqflask/api/gen_menu.py b/wqflask/wqflask/api/gen_menu.py index adf66fb5..c7bcb65d 100644 --- a/wqflask/wqflask/api/gen_menu.py +++ b/wqflask/wqflask/api/gen_menu.py @@ -1,7 +1,6 @@ from __future__ import print_function, division import sys -import json from flask import g @@ -23,14 +22,6 @@ def gen_dropdown_json(): types = get_types(groups) datasets = get_datasets(types) - #species.append(('All Species', 'All Species')) - #groups['All Species'] = [('All Groups', 'All Groups')] - #types['All Species'] = {} - #types['All Species']['All Groups'] = [('Phenotypes', 'Phenotypes')] - #datasets['All Species'] = {} - #datasets['All Species']['All Groups'] = {} - #datasets['All Species']['All Groups']['Phenotypes'] = [('All Phenotypes','All Phenotypes')] - data = dict(species=species, groups=groups, types=types, @@ -55,15 +46,6 @@ def get_groups(species): groups = {} for species_name, _species_full_name in species: groups[species_name] = [] - # results = g.db.execute("""SELECT InbredSet.Name, InbredSet.FullName - # FROM InbredSet, Species, ProbeFreeze, GenoFreeze, PublishFreeze - # WHERE Species.Name = '{}' AND - # InbredSet.SpeciesId = Species.Id AND - # (PublishFreeze.InbredSetId = InbredSet.Id OR - # GenoFreeze.InbredSetId = InbredSet.Id OR - # ProbeFreeze.InbredSetId = InbredSet.Id) - # GROUP by InbredSet.Name - # ORDER BY InbredSet.FullName""".format(species_name)).fetchall() results = g.db.execute("""SELECT InbredSet.Name, InbredSet.FullName, IFNULL(InbredSet.Family, 'None') FROM InbredSet, Species diff --git a/wqflask/wqflask/collect.py b/wqflask/wqflask/collect.py index 1d74b699..b22e0004 100644 --- a/wqflask/wqflask/collect.py +++ b/wqflask/wqflask/collect.py @@ -185,7 +185,7 @@ def delete_collection(): if len(uc_id.split(":")) > 1: flash("We've deleted the selected collections.", "alert-info") else: - flash("We've deleted the collection: {}.".format(uc_id), "alert-info") + flash("We've deleted the selected collection.", "alert-info") else: flash("We've deleted the collection: {}.".format(collection_name), "alert-info") diff --git a/wqflask/wqflask/static/new/javascript/dataset_menu_structure.json b/wqflask/wqflask/static/new/javascript/dataset_menu_structure.json deleted file mode 100644 index 0f7acc70..00000000 --- a/wqflask/wqflask/static/new/javascript/dataset_menu_structure.json +++ /dev/null @@ -1,5799 +0,0 @@ -{ - "datasets": { - "arabidopsis": { - "BayXSha": { - "Genotypes": [ - [ - "None", - "BayXShaGeno", - "BayXSha Genotypes" - ] - ], - "Phenotypes": [ - [ - "642", - "BayXShaPublish", - "BayXSha Published Phenotypes" - ] - ] - }, - "ColXBur": { - "Genotypes": [ - [ - "None", - "ColXBurGeno", - "ColXBur Genotypes" - ] - ], - "Phenotypes": [ - [ - "623", - "ColXBurPublish", - "ColXBur Published Phenotypes" - ] - ] - }, - "ColXCvi": { - "Genotypes": [ - [ - "None", - "ColXCviGeno", - "ColXCvi Genotypes" - ] - ], - "Phenotypes": [ - [ - "640", - "ColXCviPublish", - "ColXCvi Published Phenotypes" - ] - ] - } - }, - "barley": { - "QSM": { - "Leaf mRNA": [ - [ - "236", - "B1LI0809R", - "Barley1 Leaf INOC TTKS (Aug09) RMA" - ], - [ - "235", - "B1LI0809M5", - "Barley1 Leaf INOC TTKS (Aug09) MAS5" - ], - [ - "237", - "B1MI0809M5", - "Barley1 Leaf MOCK TTKS (Aug09) MAS5" - ], - [ - "238", - "B1MI0809R", - "Barley1 Leaf MOCK TTKS (Aug09) RMA" - ] - ] - }, - "SXM": { - "Embryo mRNA": [ - [ - "128", - "B139_K_1206_R", - "Barley1 Embryo gcRMA SCRI (Dec06)" - ], - [ - "124", - "B139_K_1206_M", - "Barley1 Embryo MAS 5.0 SCRI (Dec06)" - ], - [ - "114", - "B150_K_0406_R", - "Barley1 Embryo0 gcRMA SCRI (Apr06)" - ] - ], - "Genotypes": [ - [ - "615", - "SXMGeno", - "SXM Genotypes" - ] - ], - "Leaf mRNA": [ - [ - "127", - "B30_K_1206_M", - "Barley1 Leaf MAS 5.0 SCRI (Dec06)" - ], - [ - "125", - "B30_K_1206_R", - "Barley1 Leaf gcRMA SCRI (Dec06)" - ], - [ - "126", - "B30_K_1206_Rn", - "Barley1 Leaf gcRMAn SCRI (Dec06)" - ] - ], - "Phenotypes": [ - [ - "608", - "SXMPublish", - "Barley SMP Published Phenotypes" - ] - ] - } - }, - "drosophila": { - "DGRP": { - "Whole Body mRNA": [ - [ - "297", - "NCSU_DrosWB_LC_RMA_0111", - "NCSU Drosophila Whole Body (Jan11) RMA" - ] - ] - }, - "Oregon-R_x_2b3": { - "Whole Body mRNA": [ - [ - "249", - "UAB_DrosWB_LC_RMA_1009", - "UAB Whole body D.m. mRNA control (Oct09) RMA" - ], - [ - "250", - "UAB_DrosWB_LE_RMA_1009", - "UAB Whole body D.m. mRNA lead (pbAc) (Oct09) RMA" - ] - ] - } - }, - "human": { - "AD-cases-controls": { - "Brain mRNA": [ - [ - "314", - "GSE5281_F_RMA_N_0709", - "GSE5281 Human Brain Normal Full Liang (Jul09) RMA" - ], - [ - "313", - "GSE5281_F_RMA_Alzh_0709", - "GSE5281 Human Brain Alzheimer Full Liang (Jul09) RMA" - ], - [ - "233", - "GSE5281_F_RMA0709", - "GSE5281 Human Brain Full Liang (Jul09) RMA" - ], - [ - "232", - "GSE5281_RMA0709", - "GSE5281 Human Brain Best 102 Liang (Jul09) RMA" - ] - ] - }, - "AD-cases-controls-Myers": { - "Brain mRNA": [ - [ - "234", - "GSE15222_F_RI_0409", - "GSE15222 Human Brain All Cases Myers (Apr09) RankInv" - ], - [ - "290", - "GSE15222_F_N_RI_0409", - "GSE15222 Human Brain Normal Myers (Apr09) RankInv" - ], - [ - "289", - "GSE15222_F_A_RI_0409", - "GSE15222 Human Brain Alzheimer Myers (Apr09) RankInv" - ] - ], - "Genotypes": [ - [ - "None", - "AD-cases-controls-MyersGeno", - "AD-cases-controls-Myers Genotypes" - ] - ], - "Phenotypes": [ - [ - "None", - "AD-cases-controls-MyersPublish", - "AD-cases-controls-Myers Published Phenotypes" - ] - ] - }, - "Aging-Brain-UCI": { - "Entorhinal Cortex mRNA": [ - [ - "460", - "UCI_EC_0913", - "GSE11882 UCI Human Entorhinal Cortex Affy U133 Plus2 (Sep13) RMA" - ] - ], - "Hippocampus mRNA": [ - [ - "461", - "UCI_HC_0913", - "GSE11882 UCI Human Hippocampus Affy U133 Plus2 (Sep13) RMA" - ] - ], - "Phenotypes": [ - [ - "None", - "Aging-Brain-UCIPublish", - "Aging-Brain-UCI Published Phenotypes" - ] - ], - "Postcentral Gyrus mRNA": [ - [ - "462", - "UCI_PCG_0913", - "GSE11882 UCI Human Postcentral Gyrus Affy U133 Plus2 (Sep13) RMA" - ] - ], - "Superior Frontal Gyrus mRNA": [ - [ - "463", - "UCI_SG_0913", - "GSE11882 UCI Human Superior Frontal Gyrus Affy U133 Plus2 (Sep13) RMA" - ] - ] - }, - "Brain-Normal-NIH-Gibbs": { - "Cerebellum mRNA": [ - [ - "481", - "GSE15745-GPL6104_Cer0510", - "GSE15745 NIH Human Brain Cerebellum ILM humanRef-8 v2.0 (May10) RankInv" - ] - ], - "Pons mRNA": [ - [ - "484", - "GSE15745-GPL6104_Po0510", - "GSE15745 NIH Human Brain Pons ILM humanRef-8 v2.0 (May10) RankInv" - ] - ], - "Prefrontal Cortex mRNA": [ - [ - "482", - "GSE15745-GPL6104_PFC0510", - "GSE15745 NIH Human Brain Prefrontal Cortex ILM humanRef-8 v2.0 (May10) RankInv" - ] - ], - "Temporal Cerebral Wall mRNA": [ - [ - "483", - "GSE15745-GPL6104_TC0510", - "GSE15745 NIH Human Brain Temporal Cerebral ILM humanRef-8 v2.0 (May10) RankInv" - ] - ] - }, - "CANDLE": { - "Newborn Cord Blood mRNA": [ - [ - "324", - "CANDLE_NB_0711", - "CANDLE Newborn Cord ILMv6.3 (Jun11) QUANT" - ] - ], - "Phenotypes": [ - [ - "634", - "CANDLEPublish", - "CANDLE Published Phenotypes" - ] - ] - }, - "CEPH-2004": { - "Lymphoblast B-cell mRNA": [ - [ - "241", - "UT_CEPH_RankInv0909", - "UTHSC CEPH B-cells Illumina (Sep09) RankInv" - ], - [ - "215", - "Human_1008", - "Monks CEPH B-cells Agilent (Dec04) Log10Ratio" - ] - ] - }, - "GTEx": { - "Adipose tissue, subcutaneous mRNA": [ - [ - "580", - "GTEx_log2_Subcu_0314", - "GTEx Human Subcutaneous (Mar14) RPKM Log2" - ], - [ - "530", - "GTEx_Subcu_0414", - "GTEx Human Subcutaneous (Apr14) RPKM" - ] - ], - "Adipose tissue, visceral mRNA": [ - [ - "587", - "GTEx_log2_Visce_0314", - "GTEx Human Visceral (Mar14) RPKM Log2" - ], - [ - "537", - "GTEx_Visce_0414", - "GTEx Human Visceral (Apr14) RPKM" - ] - ], - "Adrenal Gland mRNA": [ - [ - "545", - "GTEx_log2_Adren_0314", - "GTEx Human Adrenal Gland (Mar14) RPKM Log2" - ], - [ - "495", - "GTEx_Adren_0414", - "GTEx Human Adrenal Gland (Apr14) RPKM" - ] - ], - "Amygdala mRNA": [ - [ - "542", - "GTEx_log2_AMY_0314", - "GTEx Human Amygdala (Mar14) RPKM Log2" - ], - [ - "492", - "GTEx_AMY_0314", - "GTEx Human Amygdala (Mar14) RPKM" - ] - ], - "Anterior Cingulate Cortex mRNA": [ - [ - "546", - "GTEx_log2_Anter_0314", - "GTEx Human Anterior Cingulate Cortex (Mar14) RPKM Log2" - ], - [ - "496", - "GTEx_Anter_0414", - "GTEx Human Anterior Cingulate Cortex (Apr14) RPKM" - ] - ], - "Aorta mRNA": [ - [ - "547", - "GTEx_log2_Aorta_0314", - "GTEx Human Aorta (Mar14) RPKM Log2" - ], - [ - "497", - "GTEx_Aorta_0414", - "GTEx Human Aorta (Apr14) RPKM" - ] - ], - "Blood, Cells - EBV-Transformed Lymphocytes mRNA": [ - [ - "548", - "GTEx_log2_Blood_0314", - "GTEx Human Blood, Cells - EBV-Transformed Lymphocytes (Mar14) RPKM Log2" - ], - [ - "498", - "GTEx_Blood_0414", - "GTEx Human Blood, Cells - EBV-Transformed Lymphocytes (Apr14) RPKM" - ] - ], - "Breast - Mammary Tissue mRNA": [ - [ - "549", - "GTEx_log2_Breas_0314", - "GTEx Human Breast - Mammary Tissue (Mar14) RPKM Log2" - ], - [ - "499", - "GTEx_Breas_0414", - "GTEx Human Breast - Mammary Tissue (Apr14) RPKM" - ] - ], - "Caudate mRNA": [ - [ - "550", - "GTEx_log2_Cauda_0314", - "GTEx Human Caudate (Mar14) RPKM Log2" - ], - [ - "500", - "GTEx_Cauda_0414", - "GTEx Human Caudate (Apr14) RPKM" - ] - ], - "Cells - EBV-Transformed Lymphocytes mRNA": [ - [ - "551", - "GTEx_log2_CellsEBV_0314", - "GTEx Human Cells - EBV-Transformed Lymphocytes (Mar14) RPKM Log2" - ], - [ - "501", - "GTEx_CellsEBV_0414", - "GTEx Human Cells - EBV-Transformed Lymphocytes (Apr14) RPKM" - ] - ], - "Cells - Leukemia Cell Line (CML) mRNA": [ - [ - "552", - "GTEx_log2_CellsLe_0314", - "GTEx Human Cells - Leukemia Cell Line (CML) (Mar14) RPKM Log2" - ], - [ - "502", - "GTEx_CellsLe_0414", - "GTEx Human Cells - Leukemia Cell Line (CML) (Apr14) RPKM" - ] - ], - "Cells - Transformed Fibroblasts mRNA": [ - [ - "553", - "GTEx_log2_CellsTr_0314", - "GTEx Human Cells - Transformed Fibroblasts (Mar14) RPKM Log2" - ], - [ - "503", - "GTEx_CellsTr_0414", - "GTEx Human Cells - Transformed Fibroblasts (Apr14) RPKM" - ] - ], - "Cerebellar Cortex mRNA": [ - [ - "554", - "GTEx_log2_CerebC_0314", - "GTEx Human Cerebellar Cortex (Mar14) RPKM Log2" - ], - [ - "504", - "GTEx_CerebC_0414", - "GTEx Human Cerebellar Cortex (Apr14) RPKM" - ] - ], - "Cerebellar Hemisphere mRNA": [ - [ - "555", - "GTEx_log2_CerebH_0314", - "GTEx Human Cerebellar Hemisphere (Mar14) RPKM Log2" - ], - [ - "505", - "GTEx_CerebH_0414", - "GTEx Human Cerebellar Hemisphere (Apr14) RPKM" - ] - ], - "Cerebellum mRNA": [ - [ - "543", - "GTEx_log2_CER_0314", - "GTEx Human Cerebellum (Mar14) RPKM Log2" - ], - [ - "493", - "GTEx_CER_0314", - "GTEx Human Cerebellum (Mar14) RPKM" - ] - ], - "Colon - Transverse mRNA": [ - [ - "556", - "GTEx_log2_Colon_0314", - "GTEx Human Colon - Transverse (Mar14) RPKM Log2" - ], - [ - "506", - "GTEx_Colon_0414", - "GTEx Human Colon - Transverse (Apr14) RPKM" - ] - ], - "Coronary mRNA": [ - [ - "557", - "GTEx_log2_Coron_0314", - "GTEx Human Coronary (Mar14) RPKM Log2" - ], - [ - "507", - "GTEx_Coron_0414", - "GTEx Human Coronary (Apr14) RPKM" - ] - ], - "Esophagus - Mucosa mRNA": [ - [ - "558", - "GTEx_log2_EsophMuc_0314", - "GTEx Human Esophagus - Mucosa (Mar14) RPKM Log2" - ], - [ - "508", - "GTEx_EsophMuc_0414", - "GTEx Human Esophagus - Mucosa (Apr14) RPKM" - ] - ], - "Esophagus - Muscularis mRNA": [ - [ - "559", - "GTEx_log2_EsophMus_0314", - "GTEx Human Esophagus - Muscularis (Mar14) RPKM Log2" - ], - [ - "509", - "GTEx_EsophMus_0414", - "GTEx Human Esophagus - Muscularis (Apr14) RPKM" - ] - ], - "Fallopian Tube mRNA": [ - [ - "560", - "GTEx_log2_Fallo_0314", - "GTEx Human Fallopian Tube (Mar14) RPKM Log2" - ], - [ - "510", - "GTEx_Fallo_0414", - "GTEx Human Fallopian Tube (Apr14) RPKM" - ] - ], - "Frontal Cortex mRNA": [ - [ - "561", - "GTEx_log2_Front_0314", - "GTEx Human Frontal Cortex (Mar14) RPKM Log2" - ], - [ - "511", - "GTEx_Front_0414", - "GTEx Human Frontal Cortex (Apr14) RPKM" - ] - ], - "Heart - Atrial Appendage mRNA": [ - [ - "562", - "GTEx_log2_HeartAt_0314", - "GTEx Human Heart - Atrial Appendage (Mar14) RPKM Log2" - ], - [ - "512", - "GTEx_HeartAt_0414", - "GTEx Human Heart - Atrial Appendage (Apr14) RPKM" - ] - ], - "Heart - Left Ventricle mRNA": [ - [ - "563", - "GTEx_log2_HeartLV_0314", - "GTEx Human Heart - Left Ventricle (Mar14) RPKM Log2" - ], - [ - "513", - "GTEx_HeartLV_0414", - "GTEx Human Heart - Left Ventricle (Apr14) RPKM" - ] - ], - "Hippocampus mRNA": [ - [ - "544", - "GTEx_log2_HIP_0314", - "GTEx Human Hippocampus (Mar14) RPKM Log2" - ], - [ - "494", - "GTEx_HIP_0314", - "GTEx Human Hippocampus (Mar14) RPKM" - ] - ], - "Hypothalamus mRNA": [ - [ - "564", - "GTEx_log2_Hypot_0314", - "GTEx Human Hypothalamus (Mar14) RPKM Log2" - ], - [ - "514", - "GTEx_Hypot_0414", - "GTEx Human Hypothalamus (Apr14) RPKM" - ] - ], - "Kidney mRNA": [ - [ - "565", - "GTEx_log2_Kidne_0314", - "GTEx Human Kidney (Mar14) RPKM Log2" - ], - [ - "515", - "GTEx_Kidne_0414", - "GTEx Human Kidney (Apr14) RPKM" - ] - ], - "Liver mRNA": [ - [ - "566", - "GTEx_log2_Liver_0314", - "GTEx Human Liver (Mar14) RPKM Log2" - ], - [ - "516", - "GTEx_Liver_0414", - "GTEx Human Liver (Apr14) RPKM" - ] - ], - "Lung mRNA": [ - [ - "567", - "GTEx_log2_Lung_0314", - "GTEx Human Lung (Mar14) RPKM Log2" - ], - [ - "517", - "GTEx_Lung _0414", - "GTEx Human Lung (Apr14) RPKM" - ] - ], - "Muscle mRNA": [ - [ - "568", - "GTEx_log2_Muscle_0314", - "GTEx Human Muscle (Mar14) RPKM Log2" - ], - [ - "518", - "GTEx_Muscl_0414", - "GTEx Human Muscle (Apr14) RPKM" - ] - ], - "Nerve - Tibial mRNA": [ - [ - "569", - "GTEx_log2_Nerve_0314", - "GTEx Human Nerve - Tibial (Mar14) RPKM Log2" - ], - [ - "519", - "GTEx_Nerve_0414", - "GTEx Human Nerve - Tibial (Apr14) RPKM" - ] - ], - "Nucleus Accumbens mRNA": [ - [ - "570", - "GTEx_log2_Nucle_0314", - "GTEx Human Nucleus Accumbens (Mar14) RPKM Log2" - ], - [ - "520", - "GTEx_Nucle_0414", - "GTEx Human Nucleus Accumbens (Apr14) RPKM" - ] - ], - "Ovary mRNA": [ - [ - "571", - "GTEx_log2_Ovary_0314", - "GTEx Human Ovary (Mar14) RPKM Log2" - ], - [ - "521", - "GTEx_Ovary_0414", - "GTEx Human Ovary (Apr14) RPKM" - ] - ], - "Pancreas mRNA": [ - [ - "572", - "GTEx_log2_Pancr_0314", - "GTEx Human Pancreas (Mar14) RPKM Log2" - ], - [ - "522", - "GTEx_Pancr_0414", - "GTEx Human Pancreas (Apr14) RPKM" - ] - ], - "Pituitary Gland mRNA": [ - [ - "573", - "GTEx_log2_Pitui_0314", - "GTEx Human Pituitary (Mar14) RPKM Log2" - ], - [ - "523", - "GTEx_Pitui_0414", - "GTEx Human Pituitary (Apr14) RPKM" - ] - ], - "Prostate mRNA": [ - [ - "574", - "GTEx_log2_Prost_0314", - "GTEx Human Prostate (Mar14) RPKM Log2" - ], - [ - "524", - "GTEx_Prost_0414", - "GTEx Human Prostate (Apr14) RPKM" - ] - ], - "Putamen mRNA": [ - [ - "575", - "GTEx_log2_Putam_0314", - "GTEx Human Putamen (Mar14) RPKM Log2" - ], - [ - "525", - "GTEx_Putam_0414", - "GTEx Human Putamen (Apr14) RPKM" - ] - ], - "Skin - Not Sun Exposed (Suprapubic) mRNA": [ - [ - "576", - "GTEx_log2_SkinN_0314", - "GTEx Human Skin-Not Sun Exposed (Suprapubic) (Mar14) RPKM Log2" - ], - [ - "526", - "GTEx_SkinN_0414", - "GTEx Human Skin-Not Sun Exposed (Suprapubic) (Apr14) RPKM" - ] - ], - "Skin - Sun Exposed (Lower leg) mRNA": [ - [ - "577", - "GTEx_log2_SkinE_0314", - "GTEx Human Skin-Sun Exposed (Lower leg) (Mar14) RPKM Log2" - ], - [ - "527", - "GTEx_SkinE_0414", - "GTEx Human Skin-Sun Exposed (Lower leg) (Apr14) RPKM" - ] - ], - "Spinal Cord mRNA": [ - [ - "578", - "GTEx_log2_Spina_0314", - "GTEx Human Spinal Cord (Mar14) RPKM Log2" - ], - [ - "528", - "GTEx_Spina_0414", - "GTEx Human Spinal Cord (Apr14) RPKM" - ] - ], - "Stomach mRNA": [ - [ - "579", - "GTEx_log2_Stoma_0314", - "GTEx Human Stomach (Mar14) RPKM Log2" - ], - [ - "529", - "GTEx_Stoma_0414", - "GTEx Human Stomach (Apr14) RPKM" - ] - ], - "Substantia Nigra mRNA": [ - [ - "581", - "GTEx_log2_Subst_0314", - "GTEx Human Substantia Nigra (Mar14) RPKM Log2" - ], - [ - "531", - "GTEx_Subst_0414", - "GTEx Human Substantia Nigra (Apr14) RPKM" - ] - ], - "Testis mRNA": [ - [ - "582", - "GTEx_log2_Testi_0314", - "GTEx Human Testis (Mar14) RPKM Log2" - ], - [ - "532", - "GTEx_Testi_0414", - "GTEx Human Testis (Apr14) RPKM" - ] - ], - "Thyroid mRNA": [ - [ - "583", - "GTEx_log2_Thyro_0314", - "GTEx Human Thyroid (Mar14) RPKM Log2" - ], - [ - "533", - "GTEx_Thyro_0414", - "GTEx Human Thyroid (Apr14) RPKM" - ] - ], - "Tibial mRNA": [ - [ - "584", - "GTEx_log2_Tibial_0314", - "GTEx Human Tibial (Mar14) RPKM Log2" - ], - [ - "534", - "GTEx_Tibia_0414", - "GTEx Human Tibial (Apr14) RPKM" - ] - ], - "Uterus mRNA": [ - [ - "585", - "GTEx_log2_Uterus_0314", - "GTEx Human Uterus (Mar14) RPKM Log2" - ], - [ - "535", - "GTEx_Uteru_0414", - "GTEx Human Uterus (Apr14) RPKM" - ] - ], - "Vagina mRNA": [ - [ - "586", - "GTEx_log2_Vagin_0314", - "GTEx Human Vagina (Mar14) RPKM Log2" - ], - [ - "536", - "GTEx_Vagin_0414", - "GTEx Human Vagina (Apr14) RPKM" - ] - ], - "Whole Blood mRNA": [ - [ - "588", - "GTEx_log2_WholeB_0314", - "GTEx Human Whole Blood (Mar14) RPKM Log2" - ], - [ - "538", - "GTEx_Whole_0414", - "GTEx Human Whole Blood (Apr14) RPKM" - ] - ] - }, - "GTEx_v5": { - "Adipose tissue, subcutaneous mRNA": [ - [ - "718", - "GTEXv5_AdipSub_0915", - "GTEXv5 Human Adipose Subcutaneous RefSeq (Sep15) RPKM log2" - ] - ], - "Adipose tissue, visceral mRNA": [ - [ - "719", - "GTEXv5_AdiVis_0915", - "GTEXv5 Human Adipose Visceral Omentum RefSeq (Sep15) RPKM log2" - ] - ], - "Adrenal Gland mRNA": [ - [ - "720", - "GTEXv5_AdrGla_0915", - "GTEXv5 Human Adrenal Gland RefSeq (Sep15) RPKM log2" - ] - ], - "Amygdala mRNA": [ - [ - "725", - "GTEXv5_Amy_0915", - "GTEXv5 Human Brain Amygdala RefSeq (Sep15) RPKM log2" - ] - ], - "Anterior Cingulate Cortex mRNA": [ - [ - "726", - "GTEXv5_AntCtx_0915", - "GTEXv5 Human Brain Anterior Cingulate Cortex BA24 RefSeq (Sep15) RPKM log2" - ] - ], - "Aorta mRNA": [ - [ - "721", - "GTEXv5_ArtAor_0915", - "GTEXv5 Human Artery Aorta RefSeq (Sep15) RPKM log2" - ] - ], - "Bladder mRNA": [ - [ - "724", - "GTEXv5_Bla_0915", - "GTEXv5 Human Bladder RefSeq (Sep15) RPKM log2" - ] - ], - "Bone Marrow mRNA": [ - [ - "740", - "GTEXv5_BM_0915", - "GTEXv5 Human Cells-Leukemia Cell Line CML RefSeq (Sep15) RPKM log2" - ] - ], - "Breast - Mammary Tissue mRNA": [ - [ - "738", - "GTEXv5_BrMa_0915", - "GTEXv5 Human Breast Mammary Tissue RefSeq (Sep15) RPKM log2" - ] - ], - "Caudate mRNA": [ - [ - "727", - "GTEXv5_BrCa_0915", - "GTEXv5 Human Brain Caudate Basal Ganglia RefSeq (Sep15) RPKM log2" - ] - ], - "Cells - EBV-Transformed Lymphocytes mRNA": [ - [ - "739", - "GTEXv5_EBV_0915", - "GTEXv5 Human Cells-EBV-Transformed Lymphocytes RefSeq (Sep15) RPKM log2" - ] - ], - "Cells - Transformed Fibroblasts mRNA": [ - [ - "741", - "GTEXv5_CTF_0915", - "GTEXv5 Human Cells-Transformed Fibroblasts RefSeq (Sep15) RPKM log2" - ] - ], - "Cerebellar Cortex mRNA": [ - [ - "730", - "GTEXv5_BrCtx_0915", - "GTEXv5 Human Brain Cortex RefSeq (Sep15) RPKM log2" - ] - ], - "Cerebellar Hemisphere mRNA": [ - [ - "728", - "GTEXv5_CerH_0915", - "GTEXv5 Human Brain Cerebellar Hemisphere RefSeq (Sep15) RPKM log2" - ] - ], - "Cerebellum mRNA": [ - [ - "729", - "GTEXv5_BrCe_0915", - "GTEXv5 Human Brain Cerebellum RefSeq (Sep15) RPKM log2" - ] - ], - "Cervix mRNA": [ - [ - "742", - "GTEXv5_CerEct_0915", - "GTEXv5 Human Cervix-Ectocervix RefSeq (Sep15) RPKM log2" - ] - ], - "Colon - Sigmoid mRNA": [ - [ - "743", - "GTEXv5_ColSig_0915", - "GTEXv5 Human Colon-Sigmoid RefSeq (Sep15) RPKM log2" - ] - ], - "Colon - Transverse mRNA": [ - [ - "744", - "GTEXv5_ColTra_0915", - "GTEXv5 Human Colon-Transverse RefSeq (Sep15) RPKM log2" - ] - ], - "Coronary mRNA": [ - [ - "722", - "GTEXv5_ArtCor_0915", - "GTEXv5 Human Artery Coronary RefSeq (Sep15) RPKM log2" - ] - ], - "Esophagus - Gastroesophageal mRNA": [ - [ - "745", - "GTEXv5_GastJun_0915", - "GTEXv5 Human Esophagus - Gastroesophageal Junction RefSeq (Sep15) RPKM log2" - ] - ], - "Esophagus - Mucosa mRNA": [ - [ - "746", - "GTEXv5_EsoMu_0915", - "GTEXv5 Human Esophagus - Mucosa RefSeq (Sep15) RPKM log2" - ] - ], - "Esophagus - Muscularis mRNA": [ - [ - "747", - "GTEXv5_EsoMus_0915", - "GTEXv5 Human Esophagus - Muscularis RefSeq (Sep15) RPKM log2" - ] - ], - "Fallopian Tube mRNA": [ - [ - "748", - "GTEXv5_Fatu_0915", - "GTEXv5 Human Fallopian Tube RefSeq (Sep15) RPKM log2" - ] - ], - "Frontal Cortex mRNA": [ - [ - "731", - "GTEXv5_BrFr_0915", - "GTEXv5 Human Brain Frontal Cortex BA9 RefSeq (Sep15) RPKM log2" - ] - ], - "Heart - Atrial Appendage mRNA": [ - [ - "749", - "GTEXv5_HAA_0915", - "GTEXv5 Human Heart - Atrial Appendage RefSeq (Sep15) RPKM log2" - ] - ], - "Heart - Left Ventricle mRNA": [ - [ - "750", - "GTEXv5_LV_0915", - "GTEXv5 Human Heart - Left Ventricle RefSeq (Sep15) RPKM log2" - ] - ], - "Hippocampus mRNA": [ - [ - "732", - "GTEXv5_Hip_0915", - "GTEXv5 Human Brain Hippocampus RefSeq (Sep15) RPKM log2" - ] - ], - "Hypothalamus mRNA": [ - [ - "733", - "GTEXv5_Hiptha_0915", - "GTEXv5 Human Brain Hypothalamus RefSeq (Sep15) RPKM log2" - ] - ], - "Kidney mRNA": [ - [ - "751", - "GTEXv5_Kidn_0915", - "GTEXv5 Human Kidney - Cortex RefSeq (Sep15) RPKM log2" - ] - ], - "Liver mRNA": [ - [ - "752", - "GTEXv5_Liv_0915", - "GTEXv5 Human Liver RefSeq (Sep15) RPKM log2" - ] - ], - "Lung mRNA": [ - [ - "753", - "GTEXv5_Lung_0915", - "GTEXv5 Human Lung RefSeq (Sep15) RPKM log2" - ] - ], - "Muscle mRNA": [ - [ - "754", - "GTEXv5_MuSk_0915", - "GTEXv5 Human Muscle - Skeletal RefSeq (Sep15) RPKM log2" - ] - ], - "Nerve - Tibial mRNA": [ - [ - "755", - "GTEXv5_Tib_0915", - "GTEXv5 Human Nerve - Tibial RefSeq (Sep15) RPKM log2" - ] - ], - "Nucleus Accumbens mRNA": [ - [ - "734", - "GTEXv5_NuAcc_0915", - "GTEXv5 Human Brain Nucleus Accumbens Basal Ganglia RefSeq (Sep15) RPKM log2" - ] - ], - "Ovary mRNA": [ - [ - "756", - "GTEXv5_Ov_0915", - "GTEXv5 Human Ovary RefSeq (Sep15) RPKM log2" - ] - ], - "Pancreas mRNA": [ - [ - "757", - "GTEXv5_Panc_0915", - "GTEXv5 Human Pancreas RefSeq (Sep15) RPKM log2" - ] - ], - "Phenotypes": [ - [ - "None", - "GTEx_v5Publish", - "GTEx_v5 Phenotypes" - ] - ], - "Pituitary Gland mRNA": [ - [ - "758", - "GTEXv5_Pit_0915", - "GTEXv5 Human Pituitary RefSeq (Sep15) RPKM log2" - ] - ], - "Prostate mRNA": [ - [ - "759", - "GTEXv5_Prost_0915", - "GTEXv5 Human Prostate RefSeq (Sep15) RPKM log2" - ] - ], - "Putamen mRNA": [ - [ - "735", - "GTEXv5_PutB_0915", - "GTEXv5 Human Brain Putamen Basal Ganglia RefSeq (Sep15) RPKM log2" - ] - ], - "Salivary Gland mRNA": [ - [ - "760", - "GTEXv5_SalGl_0915", - "GTEXv5 Human Salivary Gland Minor RefSeq (Sep15) RPKM log2" - ] - ], - "Skin - Not Sun Exposed (Suprapubic) mRNA": [ - [ - "761", - "GTEXv5_SkN_0915", - "GTEXv5 Human Skin-Not Sun Exposed-Suprapubic RefSeq (Sep15) RPKM log2" - ] - ], - "Skin - Sun Exposed (Lower leg) mRNA": [ - [ - "762", - "GTEXv5_SkS_0915", - "GTEXv5 Human Skin-Sun Exposed-Lower Leg RefSeq (Sep15) RPKM log2" - ] - ], - "Small Intestine - Terminal Ileum mRNA": [ - [ - "763", - "GTEXv5_SInt_0915", - "GTEXv5 Human Small Intestine - Terminal Ileum RefSeq (Sep15) RPKM log2" - ] - ], - "Spinal Cord mRNA": [ - [ - "736", - "GTEXv5_SpCo_0915", - "GTEXv5 Human Brain Spinal Cord Cervical C-1 RefSeq (Sep15) RPKM log2" - ] - ], - "Spleen mRNA": [ - [ - "764", - "GTEXv5_Sple_0915", - "GTEXv5 Human Spleen RefSeq (Sep15) RPKM log2" - ] - ], - "Stomach mRNA": [ - [ - "765", - "GTEXv5_Sto_0915", - "GTEXv5 Human Stomach RefSeq (Sep15) RPKM log2" - ] - ], - "Substantia Nigra mRNA": [ - [ - "737", - "GTEXv5_SubN_0915", - "GTEXv5 Human Brain Substantia Nigra RefSeq (Sep15) RPKM log2" - ] - ], - "Testis mRNA": [ - [ - "766", - "GTEXv5_Test_0915", - "GTEXv5 Human Testis RefSeq (Sep15) RPKM log2" - ] - ], - "Thyroid mRNA": [ - [ - "767", - "GTEXv5_Thy_0915", - "GTEXv5 Human Thyroid RefSeq (Sep15) RPKM log2" - ] - ], - "Tibial mRNA": [ - [ - "723", - "GTEXv5_ArtTib_0915", - "GTEXv5 Human Artery Tibial RefSeq (Sep15) RPKM log2" - ] - ], - "Uterus mRNA": [ - [ - "768", - "GTEXv5_Ut_0915", - "GTEXv5 Human Uterus RefSeq (Sep15) RPKM log2" - ] - ], - "Vagina mRNA": [ - [ - "769", - "GTEXv5_Vag_0915", - "GTEXv5 Human Vagina RefSeq (Sep15) RPKM log2" - ] - ], - "Whole Blood mRNA": [ - [ - "770", - "GTEXv5_Wbl_0915", - "GTEXv5 Human Whole Blood RefSeq (Sep15) RPKM log2" - ] - ] - }, - "HB": { - "Cerebellum mRNA": [ - [ - "326", - "HBTRC-MLC_0611", - "HBTRC-MLC Human Cerebellum Agilent (Jun11) mlratio" - ], - [ - "361", - "HBTRC-MLC_N_0611", - "HBTRC-MLC Human Cerebellum Agilent Normal (Jun11) mlratio" - ], - [ - "362", - "HBTRC-MLC_AD_0611", - "HBTRC-MLC Human Cerebellum Agilent AD (Jun11) mlratio" - ], - [ - "363", - "HBTRC-MLC_HD_0611", - "HBTRC-MLC Human Cerebellum Agilent HD (Jun11) mlratio" - ] - ], - "Prefrontal Cortex mRNA": [ - [ - "328", - "HBTRC-MLPFC_0611", - "HBTRC-MLC Human Prefrontal Cortex Agilent (Jun11) mlratio" - ], - [ - "367", - "HBTRC-MLPFC_N_0611", - "HBTRC-MLC Human Prefrontal Cortex Agilent Normal (Jun11) mlratio" - ], - [ - "368", - "HBTRC-MLPFC_AD_0611", - "HBTRC-MLC Human Prefrontal Cortex Agilent AD (Jun11) mlratio" - ], - [ - "369", - "HBTRC-MLPFC_HD_0611", - "HBTRC-MLC Human Prefrontal Cortex Agilent HD (Jun11) mlratio" - ] - ], - "Primary Visual Cortex mRNA": [ - [ - "327", - "HBTRC-MLVC_0611", - "HBTRC-MLC Human Visual Cortex Agilent (Jun11) mlratio" - ], - [ - "364", - "HBTRC-MLVC_N_0611", - "HBTRC-MLC Human Visual Cortex Agilent Normal (Jun11) mlratio" - ], - [ - "365", - "HBTRC-MLVC_AD_0611", - "HBTRC-MLC Human Visual Cortex Agilent AD (Jun11) mlratio" - ], - [ - "366", - "HBTRC-MLVC_HD_0611", - "HBTRC-MLC Human Visual Cortex Agilent HD (Jun11) mlratio" - ] - ] - }, - "HCP": { - "Phenotypes": [ - [ - "None", - "HCPPublish", - "HCP Private Phenotypes" - ] - ] - }, - "HLC": { - "Liver mRNA": [ - [ - "320", - "HLC_0311", - "GSE9588 Human Liver Normal (Mar11) Both Sexes" - ], - [ - "384", - "HLCF_0311", - "GSE9588 Human Liver Normal (Mar11) Females" - ], - [ - "383", - "HLCM_0311", - "GSE9588 Human Liver Normal (Mar11) Males" - ] - ], - "Phenotypes": [ - [ - "635", - "HLCPublish", - "HLC Published Phenotypes" - ] - ] - }, - "HLT": { - "Lung mRNA": [ - [ - "455", - "GSE23546HLT0613", - "Super Series GSE23546 Whole-Genome GXD Non-Tumorous Human Lung Tissues Affy HuRSTA array (Jun11) RMA" - ], - [ - "454", - "GRNG-GSE23545HLT0613", - "GRNG/GSE23545 Whole-Genome GXD Non-Tumorous Human Lung Tissues Affy HuRSTA array (Jun11) RMA" - ] - ] - }, - "HSB": { - "Amygdala mRNA": [ - [ - "330", - "KIN_YSM_AMY_0711", - "GN330 Human Amygdala Affy Hu-Exon 1.0 ST (Jul11) Quantile" - ] - ], - "Cerebellar Cortex mRNA": [ - [ - "331", - "KIN_YSM_CBC_0711", - "Human Cerebellar Cortex Affy Hu-Exon 1.0 ST (Jul11) Quantile" - ] - ], - "Dorsolateral Prefrontal Cortex mRNA": [ - [ - "333", - "KIN_YSM_DFC_0711", - "Human Dorsolateral Prefrontal Cortex Affy Hu-Exon 1.0 ST (Jul11) Quantile" - ] - ], - "Hippocampus mRNA": [ - [ - "337", - "KIN_YSM_HIP_0711", - "Human Hippocampus Affy Hu-Exon 1.0 ST (Jul11) Quantile" - ] - ], - "Inferior Temporal Cortex mRNA": [ - [ - "339", - "KIN_YSM_ITC_0711", - "Human Inferior Temporal Cortex Affy Hu-Exon 1.0 ST (Jul11) Quantile" - ] - ], - "Medial Prefrontal Cortex mRNA": [ - [ - "343", - "KIN_YSM_MFC_0711", - "Human Medial Prefrontal Cortex Affy Hu-Exon 1.0 ST (Jul11) Quantile" - ] - ], - "Mediodorsal Nucleus of Thalamus mRNA": [ - [ - "342", - "KIN_YSM_MD_0711", - "Human Mediodorsal Nucleus of Thalamus Affy Hu-Exon 1.0 ST (Jul11) Quantile" - ] - ], - "Orbital Prefrontal Cortex mRNA": [ - [ - "347", - "KIN_YSM_OFC_0711", - "Human Orbital Prefrontal Cortex Affy Hu-Exon 1.0 ST (Jul11) Quantile" - ] - ], - "Phenotypes": [ - [ - "None", - "HSBPublish", - "HSB Published Phenotypes" - ] - ], - "Posterior Inferior Parietal Cortex mRNA": [ - [ - "338", - "KIN_YSM_IPC_0711", - "Human Posterior Inferior Parietal Cortex Affy Hu-Exon 1.0 ST (Jul11) Quantile" - ] - ], - "Posterior Superior Temporal Cortex mRNA": [ - [ - "350", - "KIN_YSM_STC_0711", - "Human Posterior Superior Temporal Cortex Affy Hu-Exon 1.0 ST (Jul11) Quantile" - ] - ], - "Primary Auditory (A1) Cortex mRNA": [ - [ - "329", - "KIN_YSM_A1C_0711", - "Human Primary Auditory (A1) Cortex Affy Hu-Exon 1.0 ST (Jul11) Quantile" - ] - ], - "Primary Motor (M1) Cortex mRNA": [ - [ - "341", - "KIN_YSM_M1C_0711", - "Human Primary Motor (M1) Cortex Affy Hu-Exon 1.0 ST (Jul11) Quantile" - ] - ], - "Primary Somatosensory (S1) Cortex mRNA": [ - [ - "349", - "KIN_YSM_S1C_0711", - "Human Primary Somatosensory (S1) Cortex Affy Hu-Exon 1.0 ST (Jul11) Quantile" - ] - ], - "Primary Visual Cortex mRNA": [ - [ - "354", - "KIN_YSM_V1C_0711", - "Human Primary Visual Cortex Affy Hu-Exon 1.0 ST (Jul11) Quantile" - ] - ], - "Striatum mRNA": [ - [ - "351", - "KIN_YSM_STR_0711", - "Human Striatum Affy Hu-Exon 1.0 ST (Jul11) Quantile" - ] - ], - "Ventrolateral Prefrontal Cortex mRNA": [ - [ - "356", - "KIN_YSM_VFC_0711", - "Human Ventrolateral Prefrontal Cortex Affy Hu-Exon 1.0 ST (Jul11) Quantile" - ] - ] - }, - "Islets-Gerling": { - "Phenotypes": [ - [ - "None", - "Islets-GerlingPublish", - "Islets-Gerling Phenotypes" - ] - ] - }, - "TIGEM-Retina-RNA-Seq": { - "Phenotypes": [ - [ - "None", - "TIGEM-Retina-RNA-SeqPublish", - "TIGEM-Retina-RNA-Seq Phenotypes" - ] - ], - "Retina mRNA": [ - [ - "802", - "TIGEM_hg38_ret_rna-seq_0916", - "TIGEM Human Retina RNA-Seq (Sep16) RPKM log2" - ] - ] - } - }, - "mouse": { - "AIL": { - "Genotypes": [ - [ - "None", - "AILGeno", - "AIL Genotypes" - ] - ], - "Hippocampus mRNA": [ - [ - "874", - "UCSD_AIL_HIP_RNA-Seq_log2_0418", - "UCSD AIL Hippocampus (Apr18) RNA-Seq Log2" - ], - [ - "844", - "UCSD_AIL_HIP_RNA-Seq_0418", - "UCSD AIL Hippocampus (Apr18) RNA-Seq" - ] - ], - "Phenotypes": [ - [ - "653", - "AILPublish", - "AIL Phenotypes" - ] - ], - "Prefrontal Cortex mRNA": [ - [ - "876", - "UCSD_AIL_PFC_RNA-Seq_log2_0418", - "UCSD AIL Prefrontal Cortex (Apr18) RNA-Seq Log2" - ], - [ - "846", - "UCSD_AIL_PFC_RNA-Seq_0418", - "UCSD AIL Prefrontal Cortex (Apr18) RNA-Seq" - ] - ], - "Striatum mRNA": [ - [ - "875", - "UCSD_AIL_STR_RNA-Seq_log2_0418", - "UCSD AIL Striatum (Apr18) RNA-Seq Log2" - ], - [ - "845", - "UCSD_AIL_STR_RNA-Seq_0418", - "UCSD AIL Striatum (Apr18) RNA-Seq" - ] - ] - }, - "AIL-LGSM-F34-A": { - "Phenotypes": [ - [ - "655", - "AIL-LGSM-F34-APublish", - "AIL F34-A Phenotypes" - ] - ] - }, - "AIL-LGSM-F34-F39-43-GBS": { - "Phenotypes": [ - [ - "654", - "AIL-LGSM-F34-F39-43-GBSPublish", - "AIL F34-F39-43-GBS Phenotypes" - ] - ] - }, - "AIL-LGSM-F34-GBS": { - "Phenotypes": [ - [ - "656", - "AIL-LGSM-F34-GBSPublish", - "AIL F34-GBS Phenotypes" - ] - ] - }, - "AIL-LGSM-F39-43-GBS": { - "Phenotypes": [ - [ - "657", - "AIL-LGSM-F39-43-GBSPublish", - "AIL F39-43-GBS Phenotypes" - ] - ] - }, - "AKXD": { - "Genotypes": [ - [ - "611", - "AKXDGeno", - "AKXD Genotypes" - ] - ], - "Mammary Tumors mRNA": [ - [ - "224", - "NCI_Agil_Mam_Tum_RMA_0409", - "NCI Mammary LMT miRNA v2 (Apr09) RMA" - ], - [ - "36", - "MA_M_0704_M", - "NCI Mammary mRNA M430 (July04) MAS5" - ], - [ - "37", - "MA_M_0704_R", - "NCI Mammary mRNA M430 (July04) RMA" - ] - ] - }, - "AXBXA": { - "Bone Femur mRNA": [ - [ - "411", - "UCLA_AXB/BXA_Femur_0113_RSN", - "UCLA GSE27483 AXB/BXA Bone Femur ILM Mouse WG-6 v1, v1.1 (Jan13) RSN" - ] - ], - "Eye mRNA": [ - [ - "210", - "Eye_AXBXA_1008_RankInv", - "Eye AXBXA Illumina V6.2(Oct08) RankInv Beta" - ] - ], - "Genotypes": [ - [ - "636", - "AXBXAGeno", - "AXBXA Genotypes" - ] - ], - "Heart mRNA": [ - [ - "820", - "UCLA_AXB_BXA_Aor_Jan16", - "UCLA AXB/BXA Aorta Affy M430 2.0 (Jan16) RMA" - ], - [ - "421", - "IRCM_AXBXA_HRI0213", - "IRCM AXB/BXA Mouse Heart ILM MouseRef-8 v2.0 (Feb13) RankInv" - ] - ], - "Liver mRNA": [ - [ - "822", - "UCLA_AXB_BXA_Liv_Jan16", - "UCLA AXB/BXA Liver Affy M430 2.0 (Jan16) RMA" - ], - [ - "352", - "GSE16780AB_UCLA_ML0911", - "GSE16780 UCLA Mouse AXB/BXA Liver Affy HT M430A (Sep11) RMA" - ] - ], - "Phenotypes": [ - [ - "629", - "AXBXAPublish", - "AXB/BXA Published Phenotypes" - ] - ] - }, - "B6BTBRF2": { - "Genotypes": [ - [ - "618", - "B6BTBRF2Geno", - "B6BTBRF2 Genotypes" - ] - ], - "Liver mRNA": [ - [ - "38", - "LVF2_M_0704_M", - "(B6 x BTBR)F2-ob/ob Liver mRNA M430 (Jul04) MAS5" - ], - [ - "39", - "LVF2_M_0704_R", - "(B6 x BTBR)F2-ob/ob Liver mRNA M430 (Jul04) RMA" - ] - ], - "Phenotypes": [ - [ - "603", - "B6BTBRF2Publish", - "B6BTBRF2 Published Phenotypes" - ] - ] - }, - "B6D2": { - "Phenotypes": [ - [ - "None", - "B6D2Publish", - "UTHSC-Glaucoma-Aged-Retina Phenotypes" - ] - ] - }, - "B6D2F2": { - "Brain mRNA": [ - [ - "78", - "BRF2_M_0805_P", - "OHSU/VA B6D2F2 Brain mRNA M430 (Aug05) PDNN" - ], - [ - "77", - "BRF2_M_0805_R", - "OHSU/VA B6D2F2 Brain mRNA M430 (Aug05) RMA" - ], - [ - "76", - "BRF2_M_0805_M", - "OHSU/VA B6D2F2 Brain mRNA M430 (Aug05) MAS5" - ], - [ - "33", - "BRF2_M_0304_P", - "OHSU/VA B6D2F2 Brain mRNA M430A (Mar04) PDNN" - ], - [ - "31", - "BRF2_M_0304_M", - "OHSU/VA B6D2F2 Brain mRNA M430A (Mar04) MAS5" - ], - [ - "32", - "BRF2_M_0304_R", - "OHSU/VA B6D2F2 Brain mRNA M430A (Mar04) RMA" - ] - ], - "Genotypes": [ - [ - "637", - "B6D2F2Geno", - "B6D2F2 Genotypes" - ] - ] - }, - "B6D2F2-PSU": { - "Genotypes": [ - [ - "617", - "B6D2F2-PSUGeno", - "B6D2F2-PSU Genotypes" - ] - ], - "Phenotypes": [ - [ - "None", - "B6D2F2-PSUPublish", - "B6D2F2 PSU Phenotypes" - ] - ] - }, - "B6D2RI": { - "Hippocampus mRNA": [ - [ - "712", - "UTHSC_BXDAged_0615", - "UTHSC BXD Aged Hippocampus Affy Mouse Gene 1.0 ST (Jun15) RMA" - ], - [ - "805", - "UTHSC_BXDAgedEx_1116", - "UTHSC BXD Aged Hippocampus Affy Mouse Gene 1.0 ST (Jun15) Exon Level RMA" - ], - [ - "391", - "UTHSC_B6D2RI_H_0912", - "UTHSC B6D2RI Aged Hippocampus Affy Mouse Gene 1.0 ST (Sep12) RMA" - ] - ], - "Phenotypes": [ - [ - "651", - "B6D2RIPublish", - "B6D2RI Phenotypes" - ] - ] - }, - "BDF2-1999": { - "Genotypes": [ - [ - "None", - "BDF2-1999Geno", - "BDF2-1999 Genotypes" - ] - ], - "Liver mRNA": [ - [ - "169", - "UCLA_BDF2_LIVER_1999", - "UCLA BDF2 Liver (1999) mlratio" - ] - ] - }, - "BDF2-2005": { - "Genotypes": [ - [ - "None", - "BDF2-2005Geno", - "BDF2-2005 Genotypes" - ] - ], - "Striatum mRNA": [ - [ - "83", - "SA_M2_0905_M", - "OHSU/VA B6D2F2 Striatum M430v2 (Sep05) MAS5" - ], - [ - "85", - "SA_M2_0905_P", - "OHSU/VA B6D2F2 Striatum M430v2 (Sep05) PDNN" - ], - [ - "84", - "SA_M2_0905_R", - "OHSU/VA B6D2F2 Striatum M430v2 (Sep05) RMA" - ] - ] - }, - "BHF2": { - "Adipose mRNA": [ - [ - "197", - "UCLA_BHF2_ADIPOSE_FEMALE", - "UCLA BHF2 Adipose Female mlratio" - ], - [ - "196", - "UCLA_BHF2_ADIPOSE_MALE", - "UCLA BHF2 Adipose Male mlratio" - ], - [ - "165", - "UCLA_BHF2_ADIPOSE_0605", - "UCLA BHF2 Adipose (June05) mlratio" - ] - ], - "Brain mRNA": [ - [ - "199", - "UCLA_BHF2_BRAIN_FEMALE", - "UCLA BHF2 Brain Female mlratio" - ], - [ - "198", - "UCLA_BHF2_BRAIN_MALE", - "UCLA BHF2 Brain Male mlratio" - ], - [ - "166", - "UCLA_BHF2_BRAIN_0605", - "UCLA BHF2 Brain (June05) mlratio" - ] - ], - "Genotypes": [ - [ - "None", - "BHF2Geno", - "BHF2 Genotypes" - ] - ], - "Liver mRNA": [ - [ - "201", - "UCLA_BHF2_LIVER_FEMALE", - "UCLA BHF2 Liver Female mlratio" - ], - [ - "200", - "UCLA_BHF2_LIVER_MALE", - "UCLA BHF2 Liver Male mlratio" - ], - [ - "167", - "UCLA_BHF2_LIVER_0605", - "UCLA BHF2 Liver (June05) mlratio" - ] - ], - "Phenotypes": [ - [ - "None", - "BHF2Publish", - "BHF2 Phenotypes" - ] - ] - }, - "BHHBF2": { - "Adipose mRNA": [ - [ - "174", - "UCLA_BHHBF2_ADIPOSE_2005", - "UCLA BHHBF2 Adipose (2005) mlratio" - ], - [ - "180", - "UCLA_BHHBF2_ADIPOSE_MALE", - "UCLA BHHBF2 Adipose Male Only" - ], - [ - "181", - "UCLA_BHHBF2_ADIPOSE_FEMALE", - "UCLA BHHBF2 Adipose Female Only" - ] - ], - "Brain mRNA": [ - [ - "175", - "UCLA_BHHBF2_BRAIN_2005", - "UCLA BHHBF2 Brain (2005) mlratio" - ], - [ - "182", - "UCLA_BHHBF2_BRAIN_MALE", - "UCLA BHHBF2 Brain Male Only" - ], - [ - "183", - "UCLA_BHHBF2_BRAIN_FEMALE", - "UCLA BHHBF2 Brain Female Only" - ] - ], - "Genotypes": [ - [ - "None", - "BHHBF2Geno", - "BHHBF2 Genotypes" - ] - ], - "Liver mRNA": [ - [ - "176", - "UCLA_BHHBF2_LIVER_2005", - "UCLA BHHBF2 Liver (2005) mlratio" - ], - [ - "184", - "UCLA_BHHBF2_LIVER_MALE", - "UCLA BHHBF2 Liver Male Only" - ], - [ - "185", - "UCLA_BHHBF2_LIVER_FEMALE", - "UCLA BHHBF2 Liver Female Only" - ] - ], - "Muscle mRNA": [ - [ - "177", - "UCLA_BHHBF2_MUSCLE_2005", - "UCLA BHHBF2 Muscle (2005) mlratio" - ], - [ - "186", - "UCLA_BHHBF2_MUSCLE_MALE", - "UCLA BHHBF2 Muscle Male Only" - ], - [ - "187", - "UCLA_BHHBF2_MUSCLE_FEMALE", - "UCLA BHHBF2 Muscle Female Only" - ] - ] - }, - "BXD": { - "Adipose Proteome": [ - [ - "797", - "EPFL_AdiPro0416", - "EPFL/ETHZ BXD Brown Adipose, Total Tissue Proteome, Chow Diet (Apr16) Light SWATH" - ], - [ - "798", - "EPFL_AdiMitPro0416", - "EPFL/ETHZ BXD Brown Adipose, Isolated Mitochondria Proteome, Chow Diet (Apr16) Light SWATH" - ] - ], - "Adipose mRNA": [ - [ - "469", - "EPFLADGL1013", - "EPFL/LISP BXD CD Brown Adipose Affy Mouse Gene 2.0 ST Gene Level (Oct13) RMA" - ], - [ - "470", - "EPFLADEL1013", - "EPFL/LISP BXD CD Brown Adipose Affy Mouse Gene 2.0 ST Exon Level (Oct13) RMA" - ], - [ - "777", - "EL_BXDCDHFDScWAT_0216", - "EPFL/LISP BXD CD+HFD Subcutaneous WAT Affy MTA 1.0 Gene Level (Feb16) RMA" - ], - [ - "778", - "EL_BXDHFDScWAT_0216", - "EPFL/LISP BXD HFD Subcutaneous WAT Affy MTA 1.0 Gene Level (Feb16) RMA" - ], - [ - "779", - "EL_BXDCDScWAT_0216", - "EPFL/LISP BXD CD Subcutaneous WAT Affy MTA 1.0 Gene Level (Feb16) RMA" - ] - ], - "Adrenal Gland mRNA": [ - [ - "388", - "INIA_Adrenal_RMA_0612", - "INIA Adrenal Affy MoGene 1.0ST (Jun12) RMA" - ], - [ - "426", - "INIA_Adrenal_RMA_F_0612", - "INIA Adrenal Affy MoGene 1.0ST (Jun12) RMA Females" - ], - [ - "425", - "INIA_Adrenal_RMA_M_0612", - "INIA Adrenal Affy MoGene 1.0ST (Jun12) RMA Males" - ], - [ - "334", - "INIA_Adrenal_RMA_Ex_0612", - "INIA Adrenal Affy MoGene 1.0ST (Jun12) RMA Exon Level" - ] - ], - "Amygdala mRNA": [ - [ - "323", - "INIA_AmgCoh_0311", - "INIA Amygdala Cohort Affy MoGene 1.0 ST (Mar11) RMA" - ], - [ - "280", - "INIA_Amg_BLA_RMA_1110", - "INIA Amygdala Affy MoGene 1.0 ST (Nov10) RMA" - ], - [ - "316", - "INIA_Amg_BLA_RMA_M_1110", - "INIA Amygdala Affy MoGene 1.0 ST (Nov10) RMA Male" - ], - [ - "315", - "INIA_Amg_BLA_RMA_F_1110", - "INIA Amygdala Affy MoGene 1.0 ST (Nov10) RMA Female" - ], - [ - "158", - "INIA_Amg_BLA_Ex-RMA_1110", - "INIA Amygdala Exon Affy MoGene 1.0 ST (Nov10) RMA" - ] - ], - "Bone Femur mRNA": [ - [ - "410", - "UCLA_BXD_Femur_0113_RSN", - "UCLA GSE27483 BXD Bone Femur ILM Mouse WG-6 v1, v1.1 (Jan13) RSN" - ], - [ - "414", - "UCLA_BXD-on_Femur_0113_RSN", - "UCLA GSE27483 BXD Only Bone Femur ILM Mouse WG-6 v1.1 (Jan13) RSN" - ] - ], - "Brain mRNA": [ - [ - "164", - "UTHSC_BXD_WB_RNASeq1112", - "UTHSC Mouse BXD Whole Brain RNA Sequence (Nov12) RPKM Untrimmed" - ], - [ - "590", - "UTHSC_BXD_WB_RNASeqtrim1_1112", - "UTHSC Mouse BXD Whole Brain RNA Sequence (Nov12) RPKM Trimmed 1.0" - ], - [ - "394", - "UTHSC_BXD_WB_RNASeqEx1112", - "UTHSC Mouse BXD Whole Brain RNA Sequence Exon Level (Nov12) RPKM" - ], - [ - "123", - "BR_M2_1106_R", - "UCHSC BXD Whole Brain M430 2.0 (Nov06) RMA" - ], - [ - "113", - "IBR_M_0606_R", - "INIA Brain mRNA M430 (Jun06) RMA" - ], - [ - "101", - "IBR_M_0106_P", - "INIA Brain mRNA M430 (Jan06) PDNN" - ], - [ - "102", - "IBR_M_0106_R", - "INIA Brain mRNA M430 (Jan06) RMA" - ], - [ - "95", - "BR_U_1105_P", - "UTHSC Brain mRNA U74Av2 (Nov05) PDNN" - ], - [ - "81", - "BR_U_0805_P", - "UTHSC Brain mRNA U74Av2 (Aug05) PDNN" - ], - [ - "80", - "BR_U_0805_M", - "UTHSC Brain mRNA U74Av2 (Aug05) MAS5" - ], - [ - "82", - "BR_U_0805_R", - "UTHSC Brain mRNA U74Av2 (Aug05) RMA" - ], - [ - "42", - "CB_M_0204_P", - "INIA Brain mRNA M430 (Feb04) PDNN" - ] - ], - "Cartilage mRNA": [ - [ - "208", - "UCLA_BXDBXH_CARTILAGE_V2", - "UCLA BXD and BXH Cartilage v2" - ], - [ - "204", - "UCLA_BXDBXH_CARTILAGE", - "UCLA BXD and BXH Cartilage" - ], - [ - "178", - "UCLA_BXD_CARTILAGE", - "UCLA BXD Cartilage" - ] - ], - "Cerebellum mRNA": [ - [ - "72", - "GCB_M2_0505_R", - "GE-NIAAA Cerebellum mRNA M430v2 (May05) RMA" - ], - [ - "73", - "GCB_M2_0505_P", - "GE-NIAAA Cerebellum mRNA M430v2 (May05) PDNN" - ], - [ - "71", - "GCB_M2_0505_M", - "GE-NIAAA Cerebellum mRNA M430v2 (May05) MAS5" - ], - [ - "56", - "CB_M_0305_R", - "SJUT Cerebellum mRNA M430 (Mar05) RMA" - ], - [ - "55", - "CB_M_0305_P", - "SJUT Cerebellum mRNA M430 (Mar05) PDNN" - ], - [ - "54", - "CB_M_0305_M", - "SJUT Cerebellum mRNA M430 (Mar05) MAS5" - ], - [ - "46", - "CB_M_1004_R", - "SJUT Cerebellum mRNA M430 (Oct04) RMA" - ], - [ - "45", - "CB_M_1004_P", - "SJUT Cerebellum mRNA M430 (Oct04) PDNN" - ], - [ - "44", - "CB_M_1004_M", - "SJUT Cerebellum mRNA M430 (Oct04) MAS5" - ], - [ - "9", - "CB_M_1003_M", - "SJUT Cerebellum mRNA M430 (Oct03) MAS5" - ] - ], - "Eye mRNA": [ - [ - "207", - "Eye_M2_0908_R", - "Eye M430v2 (Sep08) RMA" - ], - [ - "10", - "gn10", - "Eye M430v2 No Mutant/Mutant (Aug12) RMA" - ], - [ - "261", - "Eye_M2_0908_R_NB", - "Eye M430v2 Mutant Gpnmb (Sep08) RMA" - ], - [ - "262", - "Eye_M2_0908_R_ND", - "Eye M430v2 WT Gpnmb (Sep08) RMA" - ], - [ - "382", - "Eye_M2_0908_WTWT", - "Eye M430v2 WT WT (Sep08) RMA" - ], - [ - "279", - "Eye_M2_0908_R_WT", - "Eye M430v2 WT Tyrp1 (Sep08) RMA" - ], - [ - "278", - "Eye_M2_0908_R_MT", - "Eye M430v2 Mutant Tyrp1 (Sep08) RMA" - ], - [ - "400", - "DBA2J-ONH-1212", - "Howell et al. 2011, DBA/2J Glaucoma Optic Nerve Head M430 2.0 (Dec12) RMA" - ], - [ - "360", - "BXD_GLA_0911", - "Howell et al. 2011, DBA/2J Glaucoma Retina M430 2.0 (Sep11) RMA" - ] - ], - "Fecal Metabolome": [ - [ - "717", - "RTI_RCMRC-BXDFecMetlog0814", - "RTI RCMRC BXD Fecal Metabolites CD+HFD (Aug14) Log2" - ], - [ - "716", - "RTI_RCMRC-BXDFecMetHFlog0814", - "RTI RCMRC BXD Fecal Metabolites HFD (Aug14) Log2" - ], - [ - "715", - "RTI_RCMRC-BXDFecMetLFlog0814", - "RTI RCMRC BXD Fecal Metabolites CD (Aug14) Log2" - ] - ], - "Gastrointestinal mRNA": [ - [ - "539", - "UTHSC_GutGL_0414", - "UTHSC Mouse BXD Gastrointestinal Affy MoGene 1.0 ST Gene Level (Apr14) RMA" - ], - [ - "597", - "UTHSC_GutExL_0414", - "UTHSC Mouse BXD Gastrointestinal Affy MoGene 1.0 ST Exon Level (Apr14) RMA" - ] - ], - "Genotypes": [ - [ - "600", - "BXDGeno", - "BXD Genotypes" - ] - ], - "Heart mRNA": [ - [ - "819", - "UCLA_BXD_Aor_Jan16", - "UCLA BXD Aorta Affy M430 2.0 (Jan16) RMA" - ], - [ - "485", - "EPFL-LISPBXDHeCD0114", - "EPFL/LISP BXD CD Heart Affy Mouse Gene 2.0 ST Gene Level (Jan14) RMA" - ], - [ - "486", - "EPFL-LISPBXDHeHFD0114", - "EPFL/LISP BXD HFD Heart Affy Mouse Gene 2.0 ST Gene Level (Jan14) RMA" - ], - [ - "487", - "EPFL-LISPBXDHeCDEx0114", - "EPFL/LISP BXD CD Heart Affy Mouse Gene 2.0 ST Exon Level (Jan14) RMA" - ], - [ - "488", - "EPFL-LISPBXDHeHFDEx0114", - "EPFL/LISP BXD HFD Heart Affy Mouse Gene 2.0 ST Exon Level (Jan14) RMA" - ] - ], - "Hematopoietic Cells mRNA": [ - [ - "149", - "UMCG_0907_HemaStem_ori", - "UMCG Stem Cells ILM6v1.1 (Apr09) original" - ], - [ - "145", - "UMCG_0907_HemaStem", - "UMCG Stem Cells ILM6v1.1 (Apr09) transformed" - ], - [ - "151", - "UMCG_0907_Pro_ori", - "UMCG Progenitor Cells ILM6v1.1 (Apr09) original" - ], - [ - "147", - "UMCG_0907_Pro", - "UMCG Progenitor Cells ILM6v1.1 (Apr09) transformed" - ], - [ - "150", - "UMCG_0907_Eryth_ori", - "UMCG Erythroid Cells ILM6v1.1 (Apr09) original" - ], - [ - "146", - "UMCG_0907_Eryth", - "UMCG Erythroid Cells ILM6v1.1 (Apr09) transformed" - ], - [ - "148", - "UMCG_0907_Myeloid_ori", - "UMCG Myeloid Cells ILM6v1.1 (Apr09) original" - ], - [ - "144", - "UMCG_0907_Myeloid", - "UMCG Myeloid Cells ILM6v1.1 (Apr09) transformed" - ], - [ - "7", - "HC_U_0304_R", - "GNF Stem Cells U74Av2 (Mar04) RMA" - ] - ], - "Hippocampal Precursor Cells mRNA": [ - [ - "706", - "CRTD_HipPreCell1214", - "CRTD BXD Hippocampal Precursor Cells ILM MouseWG-6_R13 (Dec14) Quantile" - ] - ], - "Hippocampus mRNA": [ - [ - "112", - "HC_M2_0606_P", - "Hippocampus Consortium M430v2 (Jun06) PDNN" - ], - [ - "111", - "HC_M2_0606_M", - "Hippocampus Consortium M430v2 (Jun06) MAS5" - ], - [ - "110", - "HC_M2_0606_R", - "Hippocampus Consortium M430v2 (Jun06) RMA" - ], - [ - "206", - "UMUTAffyExon_0209_RMA", - "UMUTAffy Hippocampus Exon (Feb09) RMA" - ], - [ - "814", - "UTHSC_ILM_BXD_hipp_NOSb_0217", - "UTHSC BXD Hippocampus ILM v6.1 NOS Balanced (Feb17) RankInv" - ], - [ - "815", - "UTHSC_ILM_BXD_hipp_NOEb_0217", - "UTHSC BXD Hippocampus ILM v6.1 NOE Balanced (Feb17) RankInv" - ], - [ - "816", - "UTHSC_ILM_BXD_hipp_RSSb_0217", - "UTHSC BXD Hippocampus ILM v6.1 RSS Balanced (Feb17) RankInv" - ], - [ - "817", - "UTHSC_ILM_BXD_hipp_RSEb_0217", - "UTHSC BXD Hippocampus ILM v6.1 RSE Balanced (Feb17) RankInv" - ], - [ - "780", - "UTHSC_ILM_BXD_hipp_NOEb_0216", - "UTHSC BXD Hippocampus ILM v6.1 NOE Balanced (Feb16) RankInv" - ], - [ - "781", - "UTHSC_ILM_BXD_hipp_RSEb_0216", - "UTHSC BXD Hippocampus ILM v6.1 RSE Balanced (Feb16) RankInv" - ], - [ - "782", - "UTHSC_ILM_BXD_hipp_RSSb_0216", - "UTHSC BXD Hippocampus ILM v6.1 RSS Balanced (Feb16) RankInv" - ], - [ - "291", - "UT_ILM_BXD_hipp_5T_1112", - "UTHSC Hippocampus Illumina v6.1 All Combined (Nov12) RankInv" - ], - [ - "292", - "UT_ILM_BXD_hipp_NON_1112", - "UTHSC Hippocampus Illumina v6.1 NON (Nov12) RankInv" - ], - [ - "293", - "UT_ILM_BXD_hipp_NOS_1112", - "UTHSC Hippocampus Illumina v6.1 NOS (Nov12) RankInv" - ], - [ - "294", - "UT_ILM_BXD_hipp_NOE_1112", - "UTHSC Hippocampus Illumina v6.1 NOE (Nov12) RankInv" - ], - [ - "295", - "UT_ILM_BXD_hipp_RSS_1112", - "UTHSC Hippocampus Illumina v6.1 RSS (Nov12) RankInv" - ], - [ - "296", - "UT_ILM_BXD_hipp_RSE_1112", - "UTHSC Hippocampus Illumina v6.1 RSE (Nov12) RankInv" - ], - [ - "242", - "UT_ILM_BXD_hipp_NON_0909", - "UTHSC Hippocampus Illumina v6.1 NON (Sep09) RankInv" - ], - [ - "243", - "UT_ILM_BXD_hipp_NOS_0909", - "UTHSC Hippocampus Illumina v6.1 NOS (Sep09) RankInv" - ], - [ - "246", - "UT_ILM_BXD_hipp_NOE_0909", - "UTHSC Hippocampus Illumina v6.1 NOE (Sep09) RankInv" - ], - [ - "244", - "UT_ILM_BXD_hipp_RSS_0909", - "UTHSC Hippocampus Illumina v6.1 RSS (Sep09) RankInv" - ], - [ - "245", - "UT_ILM_BXD_hipp_RSE_0909", - "UTHSC Hippocampus Illumina v6.1 RSE (Sep09) RankInv" - ], - [ - "711", - "UTHSC_BXD_AgeHipp0515", - "UTHSC BXD Aged Hippocampus Affy MoGene1.0 ST (May15) RMA Gene Level" - ] - ], - "Hypothalamus mRNA": [ - [ - "281", - "INIA_Hyp_RMA_1110", - "INIA Hypothalamus Affy MoGene 1.0 ST (Nov10)" - ], - [ - "318", - "INIA_Hyp_M_RMA_1110", - "INIA Hypothalamus Affy MoGene 1.0 ST (Nov10) Male" - ], - [ - "317", - "INIA_Hyp_F_RMA_1110", - "INIA Hypothalamus Affy MoGene 1.0 ST (Nov10) Female" - ], - [ - "459", - "INIA_Hyp_PCA_0813_v4", - "INIA Hypothalamus Affy MoGene 1.0 ST (Nov10) PCA Test v080913" - ], - [ - "458", - "INIA_Hyp_PCA_0813_v3", - "INIA Hypothalamus Affy MoGene 1.0 ST (Nov10) PCA Test v080813" - ], - [ - "457", - "INIA_Hyp_PCA_0813_v2", - "INIA Hypothalamus Affy MoGene 1.0 ST (Nov10) PCA Test v080513" - ], - [ - "456", - "INIA_Hyp_PCA_0813", - "INIA Hypothalamus Affy MoGene 1.0 ST (Nov10) PCA Test v080213" - ], - [ - "159", - "INIA_Hyp_RMA_Ex-1110", - "INIA Hypothalamus Exon Affy MoGene 1.0 ST (Nov10)" - ] - ], - "Kidney mRNA": [ - [ - "240", - "MA_M2M_0706_R", - "Mouse kidney M430v2 Male (Aug06) RMA" - ], - [ - "239", - "MA_M2F_0706_R", - "Mouse kidney M430v2 Female (Aug06) RMA" - ], - [ - "118", - "MA_M2_0806_R", - "Mouse kidney M430v2 Sex Balanced (Aug06) RMA" - ], - [ - "117", - "MA_M2_0806_P", - "Mouse Kidney M430v2 Sex Balanced (Aug06) PDNN" - ], - [ - "115", - "MA_M2_0706_R", - "Mouse Kidney M430v2 (Jul06) RMA" - ], - [ - "116", - "MA_M2_0706_P", - "Mouse Kidney M430v2 (Jul06) PDNN" - ] - ], - "Liver Metabolome": [ - [ - "835", - "UTHSC-ETHZ-EPFL_LivPMetExtACD0817", - "UTHSC/ETHZ/EPFL BXD Liver Polar Metabolites Extraction, Chow Diet Cohorts (Jul 2017) log2" - ], - [ - "836", - "UTHSC-ETHZ-EPFL_LivPMetExtAHFD0817", - "UTHSC/ETHZ/EPFL BXD Liver Polar Metabolites Extraction, HFD Cohorts (Jul 2017) log2" - ], - [ - "473", - "EPFL-LISP_LivPMetCDHFD1213", - "EPFL/LISP BXD Liver Polar Metabolites CD+HFD (Jun14)" - ], - [ - "474", - "EPFL-LISP_LivPMetHFD1213", - "EPFL/LISP BXD Liver Polar Metabolites HFD (Jun14)" - ], - [ - "475", - "EPFL-LISP_LivPMetCD1213", - "EPFL/LISP BXD Liver Polar Metabolites CD (Jun14)" - ], - [ - "713", - "EPFL-LISP_LivPMetlog2HFD1213", - "EPFL/LISP BXD Liver Polar Metabolites HFD (Jun14) Log2" - ], - [ - "714", - "EPFL-LISP_LivPMetlog2CD1213", - "EPFL/LISP BXD Liver Polar Metabolites CD (Jun14) Log2" - ] - ], - "Liver Proteome": [ - [ - "540", - "EPFLETHZBXDprotCD0514", - "EPFL/ETHZ BXD Liver, Chow Diet (Jun16) Top100 SWATH" - ], - [ - "541", - "EPFLETHZBXDprotHFD0514", - "EPFL/ETHZ BXD Liver, High Fat Diet (Jun16) Top100 SWATH" - ], - [ - "704", - "EPFLETHZBXDprotCD_LS1114", - "EPFL/ETHZ BXD Liver, Chow Diet (Oct14) Top10 SWATH" - ], - [ - "705", - "EPFLETHZBXDprotHF_LS1114", - "EPFL/ETHZ BXD Liver, High Fat Diet Diet (Oct14) Top10 SWATH" - ], - [ - "703", - "EPFLBXDprotCD-CDHFDRPN0214", - "EPFL/LISP BXD Liver, Soluble Proteins CD+HFD (Feb14) SRM" - ], - [ - "490", - "EPFLBXDprotCDRPN0214", - "EPFL/LISP BXD Liver, Soluble Proteins CD (Feb14) SRM" - ], - [ - "489", - "EPFLBXDprotHFDRPN0214", - "EPFL/LISP BXD Liver, Soluble Proteins HFD (Feb14) SRM" - ] - ], - "Liver mRNA": [ - [ - "857", - "EPFLMouseLiverCDHFDRMA0818", - "EPFL/LISP BXD CD+HFD Liver Affy Mouse Gene 1.0 ST (Aug18) RMA" - ], - [ - "858", - "EPFLMouseLiverHFDRMA0818", - "EPFL/LISP BXD HFD Liver Affy Mouse Gene 1.0 ST (Aug18) RMA" - ], - [ - "859", - "EPFLMouseLiverCDRMA0818", - "EPFL/LISP BXD CD Liver Affy Mouse Gene 1.0 ST (Aug18) RMA" - ], - [ - "854", - "NIA-AgBXD-Liv_CDHFD-rna-seq-0818", - "NIA Aging BXD CD+HFD Liver RNA-Seq (Aug18) Log2" - ], - [ - "855", - "NIA-AgBXD-Liv_HFD-rna-seq-0818", - "NIA Aging BXD HFD Liver RNA-Seq (Aug18) Log2" - ], - [ - "856", - "NIA-AgBXD-Liv_CD-rna-seq-0818", - "NIA Aging BXD CD Liver RNA-Seq (Aug18) Log2" - ], - [ - "818", - "UCLA_BXD_Liv_Jan16", - "UCLA BXD Liver Affy M430 2.0 (Jan16) RMA" - ], - [ - "430", - "EPFLMouseLiverRMA0413", - "EPFL/LISP BXD CD+HFD Liver Affy Mouse Gene 1.0 ST (Apr13) RMA" - ], - [ - "431", - "EPFLMouseLiverHFDRMA0413", - "EPFL/LISP BXD HFD Liver Affy Mouse Gene 1.0 ST (Apr13) RMA" - ], - [ - "848", - "EPFLMouseLiverHFCEx0413", - "EPFL/LISP BXD HFC Liver Affy Mouse Gene 1.0 ST (Apr13) RMA Exon Level" - ], - [ - "432", - "EPFLMouseLiverCDRMA0413", - "EPFL/LISP BXD CD Liver Affy Mouse Gene 1.0 ST (Apr13) RMA" - ], - [ - "849", - "EPFLMouseLiverCDEx0413", - "EPFL/LISP BXD CD Liver Affy Mouse Gene 1.0 ST (Apr13) RMA Exon Level" - ], - [ - "433", - "EPFLMouseLiverBothExRMA0413", - "EPFL/LISP BXD CD+HFD Liver Affy Mouse Gene 1.0 ST (Apr13) RMA Exon Level" - ], - [ - "700", - "UTHSC-VGX_MmBXDHepatocytesRMA1014", - "UT-VGX Hepatocytes Affy Mouse Gene 1.0 ST Gene Level (Oct14) RMA" - ], - [ - "701", - "UT-VGX_HEL1014", - "UT-VGX Hepatocytes Affy Mouse Gene 1.0 ST Exon Level (Oct14) RMA" - ], - [ - "373", - "GSE16780_UCLA_ML0911", - "GSE16780 UCLA Hybrid MDP Liver Affy HT M430A (Sep11) RMA" - ], - [ - "325", - "SUH_Liv_RMA_0611", - "SUH BXD Liver CCl4-treated Affy Mouse Gene 1.0 ST (Jun11) RMA" - ], - [ - "702", - "SUH_Liv_RMAEx_0611", - "SUH BXD Liver CCl4-treated Affy Mouse Gene 1.0 ST Exon Level (Jun11) RMA" - ], - [ - "256", - "GenEx_BXD_liverEt_M5_0912", - "GenEx BXD EtOH Liver Affy M430 2.0 (Sep12) MAS5 Both Sexes" - ], - [ - "257", - "GenEx_BXD_liverEt_M5M_0912", - "GenEx BXD EtOH Liver Affy M430 2.0 (Sep12) MAS5 Males" - ], - [ - "258", - "GenEx_BXD_liverEt_M5F_0912", - "GenEx BXD EtOH Liver Affy M430 2.0 (Sep12) MAS5 Females" - ], - [ - "307", - "GenEx_BXD_liverEt_RMA_0211", - "GenEx BXD EtOH Liver Affy M430 2.0 (Feb11) RMA Both Sexes" - ], - [ - "308", - "GenEx_BXD_liverEt_RMA_M_0211", - "GenEx BXD EtOH Liver Affy M430 2.0 (Feb11) RMA Males" - ], - [ - "309", - "GenEx_BXD_liverEt_RMA_F_0211", - "GenEx BXD EtOH Liver Affy M430 2.0 (Feb11) RMA Females" - ], - [ - "310", - "GenEx_BXD_liverSal_RMA_0211", - "GenEx BXD Sal Liver Affy M430 2.0 (Feb11) RMA Both Sexes" - ], - [ - "311", - "GenEx_BXD_liverSal_RMA_M_0211", - "GenEx BXD Sal Liver Affy M430 2.0 (Feb11) RMA Males" - ], - [ - "312", - "GenEx_BXD_liverSal_RMA_F_0211", - "GenEx BXD Sal Liver Affy M430 2.0 (Feb11) RMA Females" - ] - ], - "Lung mRNA": [ - [ - "160", - "HZI_0408_R", - "HZI Lung M430v2 (Apr08) RMA" - ], - [ - "161", - "HZI_0408_M", - "HZI Lung M430v2 (Apr08) MAS5" - ] - ], - "Midbrain mRNA": [ - [ - "381", - "VUBXDMouseMidBrainQ0512", - "VU BXD Midbrain Agilent SurePrint G3 Mouse GE (May12) Quantile" - ] - ], - "Muscle mRNA": [ - [ - "378", - "EPFLMouseMuscleRMA1211", - "EPFL/LISP BXD CD+HFD Muscle Affy Mouse Gene 1.0 ST (Dec11) RMA" - ], - [ - "380", - "EPFLMouseMuscleHFDRMA1211", - "EPFL/LISP BXD HFD Muscle Affy Mouse Gene 1.0 ST (Dec11) RMA" - ], - [ - "379", - "EPFLMouseMuscleCDRMA1211", - "EPFL/LISP BXD CD Muscle Affy Mouse Gene 1.0 ST (Dec11) RMA" - ], - [ - "395", - "EPFLMouseMuscleRMA_Ex1112", - "EPFL/LISP BXD CD+HFD Muscle Affy Mouse Gene 1.0 ST (Nov12) RMA Exon Level" - ], - [ - "396", - "EPFLMouseMuscleHFDRMAEx1112", - "EPFL/LISP BXD HFD Muscle Affy Mouse Gene 1.0 ST (Nov12) RMA Exon Level" - ], - [ - "397", - "EPFLMouseMuscleCDRMAEx1112", - "EPFL/LISP BXD CD Muscle Affy Mouse Gene 1.0 ST (Nov12) RMA Exon Level" - ] - ], - "Neocortex mRNA": [ - [ - "374", - "DevNeocortex_ILM6.2P3RInv_1111", - "BIDMC/UTHSC Dev Neocortex P3 ILMv6.2 (Nov11) RankInv" - ], - [ - "375", - "DevNeocortex_ILM6.2P14RInv_1111", - "BIDMC/UTHSC Dev Neocortex P14 ILMv6.2 (Nov11) RankInv" - ], - [ - "284", - "HQFNeoc_1210v2_RankInv", - "HQF BXD Neocortex ILM6v1.1 (Dec10v2) RankInv" - ], - [ - "282", - "HQFNeoc_1210_RankInv", - "HQF BXD Neocortex ILM6v1.1 (Dec10) RankInv" - ], - [ - "157", - "HQFNeoc_0208_RankInv", - "HQF BXD Neocortex ILM6v1.1 (Feb08) RankInv" - ], - [ - "275", - "DevNeocortex_ILM6.2P14RInv_1110", - "BIDMC/UTHSC Dev Neocortex P14 ILMv6.2 (Nov10) RankInv" - ], - [ - "274", - "DevNeocortex_ILM6.2P3RInv_1110", - "BIDMC/UTHSC Dev Neocortex P3 ILMv6.2 (Nov10) RankInv" - ] - ], - "Nucleus Accumbens mRNA": [ - [ - "156", - "VCUSalo_1007_R", - "VCU BXD NAc Sal M430 2.0 (Oct07) RMA" - ] - ], - "Phenotypes": [ - [ - "602", - "BXDPublish", - "BXD Published Phenotypes" - ], - [ - "658", - "GITrMetPublish", - "GI Tract Metagenome Phenotypes" - ] - ], - "Pituitary Gland mRNA": [ - [ - "389", - "INIA_PG_RMA_0612", - "INIA Pituitary Affy MoGene 1.0ST (Jun12) RMA" - ], - [ - "427", - "INIA_Pituitary_RMA_F_0612", - "INIA Pituitary Affy MoGene 1.0ST (Jun12) RMA Females" - ], - [ - "428", - "INIA_Pituitary_RMA_M_0612", - "INIA Pituitary Affy MoGene 1.0ST (Jun12) RMA Males" - ], - [ - "335", - "INIA_PG_RMA_Ex_0612", - "INIA Pituitary Affy MoGene 1.0ST (Jun12) RMA Exon Level" - ] - ], - "Prefrontal Cortex mRNA": [ - [ - "135", - "VCUSal_1206_R", - "VCU BXD PFC Sal M430 2.0 (Dec06) RMA" - ], - [ - "136", - "VCUEtOH_1206_R", - "VCU BXD PFC EtOH M430 2.0 (Dec06) RMA" - ], - [ - "137", - "VCUSal_1006_R", - "VCU BXD PFC Et vs Sal M430 2.0 (Dec06) Sscore" - ] - ], - "Retina mRNA": [ - [ - "709", - "DoDCMMRPRetMoGene2_0515", - "DoD Retina Normal Affy MoGene 2.0 ST (May15) RMA Gene Level" - ], - [ - "710", - "DoDCMMRPRetMoGene2Ex_0515", - "DoD Retina Normal Affy MoGene 2.0 ST (May15) RMA Exon Level" - ], - [ - "267", - "Illum_Retina_BXD_RankInv0410", - "Full HEI Retina Illumina V6.2 (Apr10) RankInv" - ], - [ - "302", - "G2NEI_ILM_Retina_BXD_RI0410", - "HEI Retina Normal Illumina V6.2 (Apr10) RankInv" - ], - [ - "785", - "DoDTATRCRetBLMoGene2_0316", - "DoD Retina After Blast Affy MoGene 2.0 ST (Mar16) RMA Gene Level" - ], - [ - "787", - "DoDRetBlastvsNormal_0416", - "DoD Retina Blast vs Normal Retina Affy MoGene 2.0 ST (Apr16) RMA Gene Level" - ], - [ - "786", - "DoDTATRCRetBLMoGene2E_0316", - "DoD Retina After Blast Affy MoGene 2.0 ST (Mar16) RMA Exon Level" - ], - [ - "385", - "ONCRetILM6_0412", - "ONC HEI Retina (April 2012) RankInv" - ], - [ - "371", - "HEIONCvsCRetILM6_0911", - "HEI ONC vs Control Retina Illumina V6.2 (Sep11) RankInv" - ] - ], - "Spleen mRNA": [ - [ - "283", - "UTHSC_SPL_RMA_1210", - "UTHSC Affy MoGene 1.0 ST Spleen (Dec10) RMA" - ], - [ - "773", - "UTHSC_SPLs1_RMA_1210", - "UTHSC Affy MoGene 1.0 ST Spleen (Dec10) RMA Set1" - ], - [ - "774", - "UTHSC_SPLs2_RMA_1210", - "UTHSC Affy MoGene 1.0 ST Spleen (Dec10) RMA Set2" - ], - [ - "286", - "UTHSC_SPL_RMA_1210M", - "UTHSC Affy MoGene 1.0 ST Spleen (Dec10) RMA Males" - ], - [ - "287", - "UTHSC_SPL_RMA_1210F", - "UTHSC Affy MoGene 1.0 ST Spleen (Dec10) RMA Females" - ], - [ - "429", - "UTHSC_SPL_RMAEx_1210", - "UTHSC Affy MoGene 1.0 ST Spleen (Dec10) RMA Exon Level" - ], - [ - "271", - "UTHSC_SPL_RMA_1010", - "UTHSC Affy MoGene 1.0 ST Spleen (Oct10) RMA" - ], - [ - "260", - "UTK_BXDSpl_VST_0110", - "UTK Spleen ILM6.1 (Jan10) VST" - ], - [ - "227", - "IoP_SPL_RMA_0509", - "IoP Affy MOE 430v2 Spleen (May09) RMA" - ] - ], - "Striatum mRNA": [ - [ - "399", - "Striatum_Exon_1212", - "HQF Striatum Affy Mouse Exon 1.0ST Gene Level (Dec09) RMA" - ], - [ - "163", - "Striatum_Exon_0209", - "HQF Striatum Affy Mouse Exon 1.0ST Exon Level (Dec09) RMA" - ], - [ - "376", - "DevStriatum_ILM6.2P3RInv_1111", - "BIDMC/UTHSC Dev Striatum P3 ILMv6.2 (Nov11) RankInv" - ], - [ - "377", - "DevStriatum_ILM6.2P14RInv_1111", - "BIDMC/UTHSC Dev Striatum P14 ILMv6.2 (Nov11) RankInv" - ], - [ - "285", - "UTHSC_Striatum_RankInv_1210", - "HQF BXD Striatum ILM6.1 (Dec10v2) RankInv" - ], - [ - "298", - "UTHSC_Str_RankInv_1210", - "HQF BXD Striatum ILM6.1 (Dec10) RankInv" - ], - [ - "152", - "UTHSC_1107_RankInv", - "HQF BXD Striatum ILM6.1 (Nov07) RankInv" - ], - [ - "74", - "SA_M2_0405_MC", - "HBP Rosen Striatum M430V2 (Apr05) MAS5 Clean" - ], - [ - "69", - "SA_M2_0405_RC", - "HBP Rosen Striatum M430V2 (Apr05) RMA Clean" - ], - [ - "68", - "SA_M2_0405_PC", - "HBP Rosen Striatum M430V2 (Apr05) PDNN Clean" - ], - [ - "67", - "SA_M2_0405_SS", - "HBP Rosen Striatum M430V2 (Apr05) SScore" - ], - [ - "66", - "SA_M2_0405_RR", - "HBP Rosen Striatum M430V2 (Apr05) RMA Orig" - ] - ], - "T Cell (helper) mRNA": [ - [ - "319", - "RTHC_0211_R", - "HZI Thelp M430v2 (Feb11) RMA" - ] - ], - "T Cell (regulatory) mRNA": [ - [ - "122", - "RTC_1106_R", - "HZI Treg M430v2 (Feb11) RMA" - ] - ], - "Ventral Tegmental Area mRNA": [ - [ - "228", - "VCUSal_0609_R", - "VCU BXD VTA Sal M430 2.0 (Jun09) RMA" - ], - [ - "230", - "VCUEtvsSal_0609_R", - "VCU BXD VTA Et vs Sal M430 2.0 (Jun09) RMA" - ], - [ - "229", - "VCUEtOH_0609_R", - "VCU BXD VTA EtOH M430 2.0 (Jun09) RMA" - ] - ] - }, - "BXD-Bone": { - "Phenotypes": [ - [ - "650", - "BXD-BonePublish", - "BXD-Bone Phenotypes" - ] - ] - }, - "BXD-Harvested": { - "Genotypes": [ - [ - "None", - "BXD-HarvestedGeno", - "BXD-Harvested Genotypes" - ] - ], - "Hippocampus mRNA": [ - [ - "873", - "JAX-BXD-Hip-Pro-0219", - "JAX BXD Hippocampal Proteome (Feb19)" - ] - ], - "Liver mRNA": [ - [ - "877", - "UTHSC-BXD-Harv_Liv-1019", - "UTHSC BXD Harvested Liver RNA-Seq (Oct19) TPM Log2" - ], - [ - "843", - "UTHSC-BXD-Harv_Liv-0118", - "UTHSC BXD Harvested Liver RNA-Seq (Aug18) Log2" - ] - ], - "Phenotypes": [ - [ - "None", - "BXD-HarvestedPublish", - "BXD-NIA-Longevity Phenotypes" - ] - ] - }, - "BXD300": { - "Genotypes": [ - [ - "None", - "BXD300Geno", - "BXD300 Genotypes" - ] - ], - "Liver mRNA": [ - [ - "105", - "LV_G_0106_B", - "UNC Agilent G4121A Liver LOWESS Stanford (Jan06) Both Sexes" - ], - [ - "103", - "LV_G_0106_M", - "UNC Agilent G4121A Liver LOWESS Stanford (Jan06) Males" - ], - [ - "104", - "LV_G_0106_F", - "UNC Agilent G4121A Liver LOWESS Stanford (Jan06) Females" - ] - ], - "Phenotypes": [ - [ - "None", - "BXD300Publish", - "BXD300 Published Phenotypes" - ] - ] - }, - "BXH": { - "Bone Femur mRNA": [ - [ - "412", - "UCLA_BXH_Femur_0113_RSN", - "UCLA GSE27483 BXH Bone Femur ILM Mouse WG-6 v1, v1.1 (Jan13) RSN" - ] - ], - "Cartilage mRNA": [ - [ - "209", - "UCLA_BXHBXD_CARTILAGE_V2", - "UCLA BXH and BXD Cartilage v2" - ], - [ - "205", - "UCLA_BXHBXD_CARTILAGE", - "UCLA BXH and BXD Cartilage" - ], - [ - "179", - "UCLA_BXH_CARTILAGE", - "UCLA BXH Cartilage" - ] - ], - "Genotypes": [ - [ - "638", - "BXHGeno", - "BXH Genotypes" - ] - ], - "Liver mRNA": [ - [ - "353", - "GSE16780BXH_UCLA_ML0911", - "GSE16780 UCLA Mouse BXH Liver Affy HT M430A (Sep11) RMA" - ] - ], - "Phenotypes": [ - [ - "627", - "BXHPublish", - "BXH Published Phenotypes" - ] - ] - }, - "C57BL-6JxC57BL-6NJF2": { - "Genotypes": [ - [ - "622", - "C57BL-6JxC57BL-6NJF2Geno", - "C57BL-6JxC57BL-6NJF2 Genotypes" - ] - ], - "Phenotypes": [ - [ - "620", - "C57BL-6JxC57BL-6NJF2Publish", - "C57BL/6JxC57BL/6NJ F2 CROSS Phenotypes" - ] - ] - }, - "CFW": { - "Hippocampus mRNA": [ - [ - "811", - "UCSD_CFW_HIP_RNA-Seq_log2_0117", - "UCSD CFW Hippocampus (Jan17) RNA-Seq Log2 Z-score" - ], - [ - "808", - "UCSD_CFW_HIP_RNA-Seq_0117", - "UCSD CFW Hippocampus RNA-Seq (Jan17) FPKM Quantile" - ] - ], - "Phenotypes": [ - [ - "None", - "CFWPublish", - "CFW Phenotypes" - ] - ], - "Prefrontal Cortex mRNA": [ - [ - "813", - "UCSD_CFW_PFC_RNA-Seq_log2_0117", - "UCSD CFW Prefrontal Cortex (Jan17) RNA-Seq Log2 Z-score" - ], - [ - "810", - "UCSD_CFW_PFC_RNA-Seq_0117", - "UCSD CFW Prefrontal Cortex (Jan17) RNA-Seq" - ] - ], - "Striatum mRNA": [ - [ - "812", - "UCSD_CFW_STR_RNA-Seq_log2_0117", - "UCSD CFW Striatum (Jan17) RNA-Seq Log2 Z-score" - ], - [ - "809", - "UCSD_CFW_SPL_RNA-Seq_0117", - "UCSD CFW Striatum (Jan17) RNA-Seq" - ] - ] - }, - "CIE-INIA": { - "LCM Brain Regions mRNA": [ - [ - "776", - "INIA_LCM_CAB_1215", - "INIA LCM (11 Regions) CIE/AIR/BAS RNA-seq Transcript Level (Dec15)" - ], - [ - "772", - "INIA_LCM_1215", - "INIA LCM (11 Regions) CIE/AIR RNA-seq Transcript Level (Dec15)" - ], - [ - "775", - "INIA_LCMB_1215", - "INIA LCM (11 Regions) BASELINE RNA-seq Transcript Level (Dec15)" - ] - ], - "Phenotypes": [ - [ - "None", - "CIE-INIAPublish", - "LCM Phenotypes" - ] - ] - }, - "CIE-RMA": { - "Hippocampus mRNA": [ - [ - "831", - "INIA_UTHSC_Hip_AffyMTA1_May17", - "INIA-UTHSC Hippocampus CIE Affy MTA 1.0 GeneLevel (Mar18) RMA" - ] - ], - "Midbrain mRNA": [ - [ - "830", - "INIA_UTHSC_Mid_AffyMTA1_Apr17", - "INIA-UTHSC Midbrain CIE Affy MTA 1.0 GeneLevel (Apr17) RMA" - ], - [ - "834", - "INIA_UTHSC_Mid_AffyMTA1_Ex_May17", - "INIA-UTHSC Midbrain CIE Affy MTA 1.0 Exon Level (Apr17) RMA" - ] - ], - "Phenotypes": [ - [ - "None", - "CIE-RMAPublish", - "CIE-RMA Phenotypes" - ] - ] - }, - "CMS": { - "Phenotypes": [ - [ - "None", - "CMSPublish", - "CMS Phenotypes" - ] - ] - }, - "CTB6F2": { - "Adipose mRNA": [ - [ - "170", - "UCLA_CTB6B6CTF2_ADIPOSE_2005", - "UCLA CTB6/B6CTF2 Adipose (2005) mlratio" - ], - [ - "189", - "UCLA_CTB6B6CTF2_ADIPOSE_FEMALE", - "UCLA CTB6B6CTF2 Adipose Female mlratio" - ], - [ - "188", - "UCLA_CTB6B6CTF2_ADIPOSE_MALE", - "UCLA CTB6B6CTF2 Adipose Male mlratio" - ] - ], - "Brain mRNA": [ - [ - "171", - "UCLA_CTB6B6CTF2_BRAIN_2005", - "UCLA CTB6/B6CTF2 Brain (2005) mlratio" - ], - [ - "190", - "UCLA_CTB6B6CTF2_BRAIN_MALE", - "UCLA CTB6/B6CTF2 Brain Males (2005) mlratio" - ], - [ - "191", - "UCLA_CTB6B6CTF2_BRAIN_FEMALE", - "UCLA CTB6/B6CTF2 Brain Females (2005) mlratio" - ] - ], - "Genotypes": [ - [ - "None", - "CTB6F2Geno", - "CTB6F2 Genotypes" - ] - ], - "Liver mRNA": [ - [ - "172", - "UCLA_CTB6B6CTF2_LIVER_2005", - "UCLA CTB6/B6CTF2 Liver (2005) mlratio" - ], - [ - "193", - "UCLA_CTB6B6CTF2_LIVER_FEMALE", - "UCLA CTB6B6CTF2 Liver Female mlratio" - ], - [ - "192", - "UCLA_CTB6B6CTF2_LIVER_MALE", - "UCLA CTB6B6CTF2 Liver Male mlratio" - ] - ], - "Muscle mRNA": [ - [ - "173", - "UCLA_CTB6B6CTF2_MUSCLE_2005", - "UCLA CTB6/B6CTF2 Muscle (2005) mlratio" - ], - [ - "195", - "UCLA_CTB6B6CTF2_MUSCLE_FEMALE", - "UCLA CTB6B6CTF2 Muscle Female mlratio" - ], - [ - "194", - "UCLA_CTB6B6CTF2_MUSCLE_MALE", - "UCLA CTB6B6CTF2 Muscle Male mlratio" - ] - ], - "Phenotypes": [ - [ - "630", - "CTB6F2Publish", - "CastB6/B6Cast F2 UCLA Published Phenotypes" - ] - ] - }, - "CXB": { - "Genotypes": [ - [ - "614", - "CXBGeno", - "CXB Genotypes" - ] - ], - "Heart mRNA": [ - [ - "821", - "UCLA_CXB_Aor_Jan16", - "UCLA CXB Aorta Affy M430 2.0 (Jan16) RMA" - ] - ], - "Hippocampus mRNA": [ - [ - "99", - "HC_M2CB_1205_P", - "Hippocampus Consortium M430v2 CXB (Dec05) PDNN" - ], - [ - "100", - "HC_M2CB_1205_R", - "Hippocampus Consortium M430v2 CXB (Dec05) RMA" - ] - ], - "Liver mRNA": [ - [ - "823", - "UCLA_CXB_Liv_Jan16", - "UCLA CXB Liver Affy M430 2.0 (Jan16) RMA" - ] - ], - "Phenotypes": [ - [ - "628", - "CXBPublish", - "CXB Published Phenotypes" - ] - ], - "Spleen mRNA": [ - [ - "153", - "STSPL_1107_R", - "Stuart Spleen M430v2 (Nov07) RMA" - ] - ] - }, - "D2GM": { - "Phenotypes": [ - [ - "None", - "D2GMPublish", - "D2GM Phenotypes" - ] - ], - "Retina mRNA": [ - [ - "847", - "JAX_D2GM_RSeq_log2Z_0418", - "JAX Retina (Apr18) RNA-Seq log2-Z" - ] - ] - }, - "HS": { - "Hippocampus mRNA": [ - [ - "268", - "OXUKHS_ILMHipp_RI0510", - "OX UK HS ILM6v1.1 Hippocampus (May 2010) RankInv" - ] - ], - "Liver mRNA": [ - [ - "269", - "OXUKHS_ILMLiver_RI0510", - "OX UK HS ILM6v1.1 Liver (May 2010) RankInv" - ] - ], - "Lung mRNA": [ - [ - "270", - "OXUKHS_ILMLung_RI0510", - "OX UK HS ILM6v1.1 Lung (May 2010) RankInv" - ] - ], - "Phenotypes": [ - [ - "624", - "HSPublish", - "Heterogeneous Stock Phenotypes" - ] - ] - }, - "HS-CC": { - "Striatum mRNA": [ - [ - "304", - "OHSU_HS-CC_ILMStr_0211", - "OHSU HS-CC Striatum ILM6v1 (Feb11) RankInv" - ] - ] - }, - "LGSM-AIG34_50-56-GBS": { - "Phenotypes": [ - [ - "None", - "LGSM-AIG34_50-56-GBSPublish", - "LGSM AIG34/50-56 GBS Phenotypes" - ] - ] - }, - "LXS": { - "Genotypes": [ - [ - "601", - "LXSGeno", - "LXS Genotypes" - ] - ], - "Hippocampus mRNA": [ - [ - "211", - "Illum_LXS_Hipp_RSS_1008", - "Hippocampus Illumina RSS (Oct08) RankInv beta" - ], - [ - "213", - "Illum_LXS_Hipp_NOS_1008", - "Hippocampus Illumina NOS (Oct08) RankInv beta" - ], - [ - "219", - "Illum_LXS_Hipp_NON_1008", - "Hippocampus Illumina NON (Oct08) RankInv beta" - ], - [ - "212", - "Illum_LXS_Hipp_RSE_1008", - "Hippocampus Illumina RSE (Oct08) RankInv beta" - ], - [ - "214", - "Illum_LXS_Hipp_NOE_1008", - "Hippocampus Illumina NOE (Oct08) RankInv beta" - ], - [ - "143", - "Illum_LXS_Hipp_loess0807", - "Hippocampus Illumina (Aug07) LOESS" - ], - [ - "142", - "Illum_LXS_Hipp_loess_nb0807", - "Hippocampus Illumina (Aug07) LOESS_NB" - ], - [ - "141", - "Illum_LXS_Hipp_quant0807", - "Hippocampus Illumina (Aug07) QUANT" - ], - [ - "140", - "Illum_LXS_Hipp_quant_nb0807", - "Hippocampus Illumina (Aug07) QUANT_NB" - ], - [ - "139", - "Illum_LXS_Hipp_rsn0807", - "Hippocampus Illumina (Aug07) RSN" - ], - [ - "138", - "Illum_LXS_Hipp_rsn_nb0807", - "Hippocampus Illumina (Aug07) RSN_NB" - ], - [ - "133", - "Hipp_Illumina_RankInv_0507", - "Hippocampus Illumina (May07) RankInv" - ] - ], - "Phenotypes": [ - [ - "606", - "LXSPublish", - "LXS Published Phenotypes" - ] - ], - "Prefrontal Cortex mRNA": [ - [ - "130", - "VCUSal_0806_R", - "VCU LXS PFC Sal M430A 2.0 (Aug06) RMA" - ] - ] - }, - "Linsenbardt-Boehm": { - "Genotypes": [ - [ - "None", - "Linsenbardt-BoehmGeno", - "Linsenbardt-Boehm Genotypes" - ] - ], - "Phenotypes": [ - [ - "645", - "Linsenbardt-BoehmPublish", - "Linsenbardt-Boehm Published Phenotypes" - ] - ] - }, - "MDP": { - "Bone Femur mRNA": [ - [ - "413", - "UCLA_MDP_Femur_0113_RSN", - "UCLA GSE27483 MDP Bone Femur ILM Mouse WG-6 v1, v1.1 (Jan13) RSN" - ] - ], - "Dorsal Root Ganglia mRNA": [ - [ - "402", - "TSRI-DRG-AffyMOE430_0113-MDP", - "TSRI DRG Affy Mouse Genome 430 2.0 (Jan13) RMA MDP" - ] - ], - "Genotypes": [ - [ - "609", - "MDPGeno", - "MDP Genotypes" - ] - ], - "Hippocampus mRNA": [ - [ - "272", - "HC_M2_0606_MDP", - "Hippocampus Consortium M430v2 (Jun06) RMA MDP" - ], - [ - "273", - "UMUTAffyExon_0209_RMA_MDP", - "UMUTAffy Hippocampus Exon (Feb09) RMA MDP" - ] - ], - "Liver mRNA": [ - [ - "370", - "GSE16780MDP_UCLA_ML0911", - "GSE16780 UCLA Mouse MDP Liver Affy HT M430A (Sep11) RMA" - ], - [ - "357", - "JAX_CSB_L_0711", - "JAX Liver Affy M430 2.0 (Jul11) MDP" - ], - [ - "358", - "JAX_CSB_L_HF_0711", - "JAX Liver HF Affy M430 2.0 (Jul11) MDP" - ], - [ - "359", - "JAX_CSB_L_6C_0711", - "JAX Liver 6C Affy M430 2.0 (Jul11) MDP" - ], - [ - "403", - "JAX_liver_agil_MDP-0113", - "Harrill-Rusyn MDP Liver Acetaminophen Tox Study (G4121A, 2009)" - ] - ], - "Phenotypes": [ - [ - "605", - "MDPPublish", - "Mouse Phenome Database" - ] - ], - "Spleen mRNA": [ - [ - "801", - "HMS_mm8_MDP_Spl_CD4_1116", - "HMS Spleen CD4+ T cells MDP Affy Mouse Gene 1.0 ST (Jul16) Gene Level" - ] - ] - }, - "NZBXFVB-N2": { - "Mammary Tumors mRNA": [ - [ - "225", - "NCI_Mam_Tum_RMA_0409", - "NCI Mammary M430v2 (Apr09) RMA" - ] - ], - "Phenotypes": [ - [ - "607", - "NZBXFVB-N2Publish", - "NZBXFVB-N2 Published Phenotypes" - ] - ] - }, - "Retina-RGC-Rheaume": { - "Phenotypes": [ - [ - "None", - "Retina-RGC-RheaumePublish", - "Retina-RGC-Rheaume Phenotypes" - ] - ], - "Retina Single-cell RNA-Seq": [ - [ - "865", - "UConn-RGC-RSeq_r-0918", - "UConn-Rheaume Retina RGC (Sep18) scRNA-Seq Raw" - ], - [ - "866", - "UConn-RGC-RSeq_log2-0918", - "UConn-Rheaume Retina RGC (Sep18) scRNA-Seq Log2" - ], - [ - "867", - "UConn-RGC-RSeq_s-0918", - "UConn-Rheaume Retina RGC (Sep18) scRNA-Seq Siamak" - ] - ] - }, - "SOTNOT-OHSU": { - "Genotypes": [ - [ - "613", - "SOTNOT-OHSUGeno", - "SOTNOT-OHSU Genotypes" - ] - ] - } - }, - "poplar": { - "Poplar": { - "Phenotypes": [ - [ - "649", - "PoplarPublish", - "Poplar Phenotypes" - ] - ] - } - }, - "rat": { - "HRDP": { - "Genotypes": [ - [ - "None", - "HRDPGeno", - "HRDP Genotypes" - ] - ], - "Phenotypes": [ - [ - "None", - "HRDPPublish", - "HRDP Phenotypes" - ] - ] - }, - "HSNIH-Palmer": { - "Infralimbic Cortex mRNA": [ - [ - "861", - "HSNIH-Rat-IL-RSeq-0818", - "HSNIH-Palmer Infralimbic Cortex RNA-Seq (Aug18) rlog" - ] - ], - "Lateral Habenula mRNA": [ - [ - "862", - "HSNIH-Rat-LHB-RSeq-0818", - "HSNIH-Palmer Lateral Habenula RNA-Seq (Aug18) rlog" - ] - ], - "Nucleus Accumbens mRNA": [ - [ - "860", - "HSNIH-Rat-Acbc-RSeq-0818", - "HSNIH-Palmer Nucleus Accumbens Core RNA-Seq (Aug18) rlog" - ] - ], - "Orbitofrontal Cortex mRNA": [ - [ - "864", - "HSNIH-Rat-VoLo-RSeq-0818", - "HSNIH-Palmer Orbitofrontal Cortex RNA-Seq (Aug18) rlog" - ] - ], - "Phenotypes": [ - [ - "652", - "HSNIH-PalmerPublish", - "HSNIH Phenotypes" - ] - ], - "Prelimbic Cortex mRNA": [ - [ - "863", - "HSNIH-Rat-PL-RSeq-0818", - "HSNIH-Palmer Prelimbic Cortex RNA-Seq (Aug18) rlog" - ] - ], - "Prefrontal Cortex mRNA": [ - [ - "864", - "HSNIH-Rat-VoLo-RSeq-0818", - "HSNIH-Palmer Orbitofrontal Cortex RNA-Seq (Aug18) rlog" - ], - [ - "863", - "HSNIH-Rat-PL-RSeq-0818", - "HSNIH-Palmer Prelimbic Cortex RNA-Seq (Aug18) rlog" - ], - [ - "861", - "HSNIH-Rat-IL-RSeq-0818", - "HSNIH-Palmer Infralimbic Cortex RNA-Seq (Aug18) rlog" - ] - ] - }, - "HSNIH-RGSMC": { - "Phenotypes": [ - [ - "None", - "HSNIH-RGSMCPublish", - "HSNIH Published Phenotypes" - ] - ] - }, - "HXBBXH": { - "Adipose mRNA": [ - [ - "799", - "FGUCAS_BAdip0516", - "FGUCAS BXH/HXB Brown Adipose Affy Rat Gene 2.0 ST (May16) log2" - ] - ], - "Adrenal Gland mRNA": [ - [ - "220", - "HXB_Adrenal_1208", - "MDC/CAS/UCL Adrenal 230A (Dec08) RMA" - ] - ], - "Genotypes": [ - [ - "None", - "HXBBXHGeno", - "HXBBXH Genotypes" - ] - ], - "Heart mRNA": [ - [ - "221", - "HXB_Heart_1208", - "MDC/CAS/UCL Heart 230_V2 (Dec08) RMA" - ] - ], - "Hippocampus mRNA": [ - [ - "231", - "UT_HippRatEx_RMA_0709", - "UT Hippocampus Affy RaEx 1.0 Exon (Jul09) RMA" - ] - ], - "Kidney mRNA": [ - [ - "70", - "KI_2A_0405_M", - "MDC/CAS/ICL Kidney 230A (Apr05) MAS5" - ], - [ - "65", - "KI_2A_0405_Rz", - "MDC/CAS/ICL Kidney 230A (Apr05) RMA 2z+8" - ], - [ - "64", - "KI_2A_0405_R", - "MDC/CAS/ICL Kidney 230A (Apr05) RMA" - ] - ], - "Liver mRNA": [ - [ - "222", - "HXB_Liver_1208", - "MDC/CAS/UCL Liver 230v2 (Dec08) RMA" - ] - ], - "Peritoneal Fat mRNA": [ - [ - "79", - "FT_2A_0805_M", - "MDC/CAS/ICL Peritoneal Fat 230A (Aug05) MAS5" - ], - [ - "75", - "FT_2A_0605_Rz", - "MDC/CAS/ICL Peritoneal Fat 230A (Jun05) RMA 2z+8" - ] - ], - "Phenotypes": [ - [ - "632", - "HXBBXHPublish", - "HXB/BXH Published Phenotypes" - ] - ] - }, - "SRxSHRSPF2": { - "Eye mRNA": [ - [ - "226", - "UIOWA_Eye_RMA_0906", - "UIOWA Eye mRNA RAE230v2 (Sep06) RMA" - ] - ] - } - }, - "soybean": { - "J12XJ58F11": { - "Genotypes": [ - [ - "None", - "J12XJ58F11Geno", - "J12XJ58F11 Genotypes" - ] - ], - "Phenotypes": [ - [ - "647", - "J12XJ58F11Publish", - "J12XJ58F11 Phenotypes" - ] - ] - }, - "J12XJ58F2": { - "Phenotypes": [ - [ - "616", - "J12XJ58F2Publish", - "J12XJ58F2 Published Phenotypes" - ] - ] - } - }, - "tomato": { - "LXP": { - "Phenotypes": [ - [ - "621", - "LXPPublish", - "LXP Published Phenotypes" - ] - ] - } - } - }, - "groups": { - "arabidopsis": [ - [ - "BayXSha", - "BayXSha" - ], - [ - "ColXBur", - "ColXBur" - ], - [ - "ColXCvi", - "ColXCvi" - ] - ], - "barley": [ - [ - "QSM", - "QSM" - ], - [ - "SXM", - "SXM" - ] - ], - "drosophila": [ - [ - "DGRP", - "Drosophila Genetic Reference Panel" - ], - [ - "Oregon-R_x_2b3", - "Oregon-R x 2b3" - ] - ], - "human": [ - [ - "HB", - "Brain, Aging: AD, HD, Normal Gene Expression (Harvard/Merck)" - ], - [ - "AD-cases-controls", - "Brain, Aging: AD, Normal Gene Expression (Liang)" - ], - [ - "AD-cases-controls-Myers", - "Brain, Aging: AD, Normal Gene Expression with Genotypes (Myers)" - ], - [ - "Aging-Brain-UCI", - "Brain, Aging: Normal Gene Expression (UCI/Cotman)" - ], - [ - "HCP", - "Brain, Cognition, Human Connectome Project" - ], - [ - "HSB", - "Brain, Development: Normal Gene Expression (Yale/Sestan)" - ], - [ - "Brain-Normal-NIH-Gibbs", - "Brain: Normal Gene Expression (NIH/Gibbs)" - ], - [ - "CANDLE", - "Child Development: CANDLE Cohort with Genotypes (TUCI/UTHSC)" - ], - [ - "GTEx", - "GTEx v3 All Tissues, RNA-Seq with Genotypes" - ], - [ - "GTEx_v5", - "GTEx v5 All Tissues, RNA-Seq with Genotypes" - ], - [ - "HLC", - "Liver: Normal Gene Expression with Genotypes (Merck)" - ], - [ - "HLT", - "Lung: Normal Gene Expression (Merck)" - ], - [ - "CEPH-2004", - "Lymphoblastoid Cells: Gene Expression (CEPH, Williams)" - ], - [ - "Islets-Gerling", - "Pancreatic: Islets (UTHSC/Gerling)" - ], - [ - "TIGEM-Retina-RNA-Seq", - "Retina: Normal Adult Gene Expression, RNA-Seq (TIGEM)" - ] - ], - "mouse": [ - [ - "AIL", - "AIL Advanced Intercross Line" - ], - [ - "AIL-LGSM-F34-A", - "AIL LGSM F34 (Array)" - ], - [ - "AIL-LGSM-F34-GBS", - "AIL LGSM F34 (GBS)" - ], - [ - "AIL-LGSM-F34-F39-43-GBS", - "AIL LGSM F34 and F39-43 (GBS)" - ], - [ - "AIL-LGSM-F39-43-GBS", - "AIL LGSM F39-43 (GBS)" - ], - [ - "AKXD", - "AKXD RI Family" - ], - [ - "AXBXA", - "AXB/BXA RI Family" - ], - [ - "B6BTBRF2", - "B6BTBRF2" - ], - [ - "Linsenbardt-Boehm", - "B6D2 EtOH Selected Advanced Intercross" - ], - [ - "B6D2F2", - "B6D2F2" - ], - [ - "B6D2F2-PSU", - "B6D2F2 PSU" - ], - [ - "BDF2-1999", - "BDF2 UCLA" - ], - [ - "BDF2-2005", - "BDF2-2005" - ], - [ - "BHHBF2", - "BH/HB F2 UCLA" - ], - [ - "BHF2", - "BHF2 (Apoe Null) UCLA" - ], - [ - "B6D2RI", - "BXD Aged" - ], - [ - "BXD-Bone", - "BXD Bone Individual Data" - ], - [ - "BXD-Harvested", - "BXD NIA Longevity Study" - ], - [ - "BXD", - "BXD RI Family" - ], - [ - "BXD300", - "BXD300" - ], - [ - "BXH", - "BXH RI Family" - ], - [ - "CTB6F2", - "CastB6/B6Cast F2 UCLA" - ], - [ - "CFW", - "CFW Outbred GWAS" - ], - [ - "CIE-INIA", - "Chronic Intermittent Ethanol Phase 1" - ], - [ - "CIE-RMA", - "Chronic Intermittent Ethanol Phase 2" - ], - [ - "CMS", - "Chronic Mild Stress" - ], - [ - "CXB", - "CXB RI Family (strain means)" - ], - [ - "D2GM", - "D2 Glaucoma Model" - ], - [ - "B6D2", - "Glaucoma and Aged Retina, UTHSC" - ], - [ - "HS", - "Heterogeneous Stock" - ], - [ - "HS-CC", - "Heterogeneous Stock Collaborative Cross" - ], - [ - "LXS", - "ILSXISS (LXS) RI Family (strain means)" - ], - [ - "LGSM-AIG34_50-56-GBS", - "LGSM AI G34/50-56 Lionikas (GBS)" - ], - [ - "MDP", - "Mouse Diversity Panel (strain means)" - ], - [ - "NZBXFVB-N2", - "NZB/FVB N2 NCI" - ], - [ - "C57BL-6JxC57BL-6NJF2", - "Reduced Complexity Cross (B6JxB6N F2)" - ], - [ - "Retina-RGC-Rheaume", - "Retina RGC Rheaume" - ], - [ - "SOTNOT-OHSU", - "SOTNOT-OHSU" - ] - ], - "poplar": [ - [ - "Poplar", - "Poplar" - ] - ], - "rat": [ - [ - "HXBBXH", - "HXB/BXH" - ], - [ - "HRDP", - "Hybrid Rat Diversity Panel" - ], - [ - "HSNIH-Palmer", - "NIH Heterogeneous Stock (Palmer)" - ], - [ - "HSNIH-RGSMC", - "NIH Heterogeneous Stock (RGSMC 2013)" - ], - [ - "SRxSHRSPF2", - "UIOWA SRxSHRSP F2" - ] - ], - "soybean": [ - [ - "J12XJ58F11", - "J12XJ58F11" - ], - [ - "J12XJ58F2", - "J12XJ58F2" - ] - ], - "tomato": [ - [ - "LXP", - "LXP" - ] - ] - }, - "species": [ - [ - "human", - "Human (hg19)" - ], - [ - "mouse", - "Mouse (mm10)" - ], - [ - "rat", - "Rat (rn6)" - ], - [ - "drosophila", - "Drosophila" - ], - [ - "arabidopsis", - "Arabidopsis thaliana" - ], - [ - "barley", - "Barley" - ], - [ - "poplar", - "Poplar" - ], - [ - "soybean", - "Soybean" - ], - [ - "tomato", - "Tomato" - ] - ], - "types": { - "arabidopsis": { - "BayXSha": [ - [ - "Phenotypes", - "Phenotypes" - ], - [ - "Genotypes", - "Genotypes" - ] - ], - "ColXBur": [ - [ - "Phenotypes", - "Phenotypes" - ], - [ - "Genotypes", - "Genotypes" - ] - ], - "ColXCvi": [ - [ - "Phenotypes", - "Phenotypes" - ], - [ - "Genotypes", - "Genotypes" - ] - ] - }, - "barley": { - "QSM": [ - [ - "Leaf mRNA", - "Leaf mRNA" - ] - ], - "SXM": [ - [ - "Phenotypes", - "Phenotypes" - ], - [ - "Genotypes", - "Genotypes" - ], - [ - "Embryo mRNA", - "Embryo mRNA" - ], - [ - "Leaf mRNA", - "Leaf mRNA" - ] - ] - }, - "drosophila": { - "DGRP": [ - [ - "Whole Body mRNA", - "Whole Body mRNA" - ] - ], - "Oregon-R_x_2b3": [ - [ - "Whole Body mRNA", - "Whole Body mRNA" - ] - ] - }, - "human": { - "AD-cases-controls": [ - [ - "Brain mRNA", - "Brain mRNA" - ] - ], - "AD-cases-controls-Myers": [ - [ - "Phenotypes", - "Phenotypes" - ], - [ - "Genotypes", - "Genotypes" - ], - [ - "Brain mRNA", - "Brain mRNA" - ] - ], - "Aging-Brain-UCI": [ - [ - "Phenotypes", - "Phenotypes" - ], - [ - "Entorhinal Cortex mRNA", - "Entorhinal Cortex mRNA" - ], - [ - "Hippocampus mRNA", - "Hippocampus mRNA" - ], - [ - "Postcentral Gyrus mRNA", - "Postcentral Gyrus mRNA" - ], - [ - "Superior Frontal Gyrus mRNA", - "Superior Frontal Gyrus mRNA" - ] - ], - "Brain-Normal-NIH-Gibbs": [ - [ - "Cerebellum mRNA", - "Cerebellum mRNA" - ], - [ - "Pons mRNA", - "Pons mRNA" - ], - [ - "Prefrontal Cortex mRNA", - "Prefrontal Cortex mRNA" - ], - [ - "Temporal Cerebral Wall mRNA", - "Temporal Cerebral Wall mRNA" - ] - ], - "CANDLE": [ - [ - "Phenotypes", - "Phenotypes" - ], - [ - "Newborn Cord Blood mRNA", - "Newborn Cord Blood mRNA" - ] - ], - "CEPH-2004": [ - [ - "Lymphoblast B-cell mRNA", - "Lymphoblast B-cell mRNA" - ] - ], - "GTEx": [ - [ - "Adipose tissue, subcutaneous mRNA", - "Adipose tissue, subcutaneous mRNA" - ], - [ - "Adipose tissue, visceral mRNA", - "Adipose tissue, visceral mRNA" - ], - [ - "Adrenal Gland mRNA", - "Adrenal Gland mRNA" - ], - [ - "Amygdala mRNA", - "Amygdala mRNA" - ], - [ - "Anterior Cingulate Cortex mRNA", - "Anterior Cingulate Cortex mRNA" - ], - [ - "Aorta mRNA", - "Aorta mRNA" - ], - [ - "Blood, Cells - EBV-Transformed Lymphocytes mRNA", - "Blood, Cells - EBV-Transformed Lymphocytes mRNA" - ], - [ - "Breast - Mammary Tissue mRNA", - "Breast - Mammary Tissue mRNA" - ], - [ - "Caudate mRNA", - "Caudate mRNA" - ], - [ - "Cells - EBV-Transformed Lymphocytes mRNA", - "Cells - EBV-Transformed Lymphocytes mRNA" - ], - [ - "Cells - Leukemia Cell Line (CML) mRNA", - "Cells - Leukemia Cell Line (CML) mRNA" - ], - [ - "Cells - Transformed Fibroblasts mRNA", - "Cells - Transformed Fibroblasts mRNA" - ], - [ - "Cerebellar Cortex mRNA", - "Cerebellar Cortex mRNA" - ], - [ - "Cerebellar Hemisphere mRNA", - "Cerebellar Hemisphere mRNA" - ], - [ - "Cerebellum mRNA", - "Cerebellum mRNA" - ], - [ - "Colon - Transverse mRNA", - "Colon - Transverse mRNA" - ], - [ - "Coronary mRNA", - "Coronary mRNA" - ], - [ - "Esophagus - Mucosa mRNA", - "Esophagus - Mucosa mRNA" - ], - [ - "Esophagus - Muscularis mRNA", - "Esophagus - Muscularis mRNA" - ], - [ - "Fallopian Tube mRNA", - "Fallopian Tube mRNA" - ], - [ - "Frontal Cortex mRNA", - "Frontal Cortex mRNA" - ], - [ - "Heart - Atrial Appendage mRNA", - "Heart - Atrial Appendage mRNA" - ], - [ - "Heart - Left Ventricle mRNA", - "Heart - Left Ventricle mRNA" - ], - [ - "Hippocampus mRNA", - "Hippocampus mRNA" - ], - [ - "Hypothalamus mRNA", - "Hypothalamus mRNA" - ], - [ - "Kidney mRNA", - "Kidney mRNA" - ], - [ - "Liver mRNA", - "Liver mRNA" - ], - [ - "Lung mRNA", - "Lung mRNA" - ], - [ - "Muscle mRNA", - "Muscle mRNA" - ], - [ - "Nerve - Tibial mRNA", - "Nerve - Tibial mRNA" - ], - [ - "Nucleus Accumbens mRNA", - "Nucleus Accumbens mRNA" - ], - [ - "Ovary mRNA", - "Ovary mRNA" - ], - [ - "Pancreas mRNA", - "Pancreas mRNA" - ], - [ - "Pituitary Gland mRNA", - "Pituitary Gland mRNA" - ], - [ - "Prostate mRNA", - "Prostate mRNA" - ], - [ - "Putamen mRNA", - "Putamen mRNA" - ], - [ - "Skin - Not Sun Exposed (Suprapubic) mRNA", - "Skin - Not Sun Exposed (Suprapubic) mRNA" - ], - [ - "Skin - Sun Exposed (Lower leg) mRNA", - "Skin - Sun Exposed (Lower leg) mRNA" - ], - [ - "Spinal Cord mRNA", - "Spinal Cord mRNA" - ], - [ - "Stomach mRNA", - "Stomach mRNA" - ], - [ - "Substantia Nigra mRNA", - "Substantia Nigra mRNA" - ], - [ - "Testis mRNA", - "Testis mRNA" - ], - [ - "Thyroid mRNA", - "Thyroid mRNA" - ], - [ - "Tibial mRNA", - "Tibial mRNA" - ], - [ - "Uterus mRNA", - "Uterus mRNA" - ], - [ - "Vagina mRNA", - "Vagina mRNA" - ], - [ - "Whole Blood mRNA", - "Whole Blood mRNA" - ] - ], - "GTEx_v5": [ - [ - "Phenotypes", - "Phenotypes" - ], - [ - "Adipose tissue, subcutaneous mRNA", - "Adipose tissue, subcutaneous mRNA" - ], - [ - "Adipose tissue, visceral mRNA", - "Adipose tissue, visceral mRNA" - ], - [ - "Adrenal Gland mRNA", - "Adrenal Gland mRNA" - ], - [ - "Amygdala mRNA", - "Amygdala mRNA" - ], - [ - "Anterior Cingulate Cortex mRNA", - "Anterior Cingulate Cortex mRNA" - ], - [ - "Aorta mRNA", - "Aorta mRNA" - ], - [ - "Bladder mRNA", - "Bladder mRNA" - ], - [ - "Bone Marrow mRNA", - "Bone Marrow mRNA" - ], - [ - "Breast - Mammary Tissue mRNA", - "Breast - Mammary Tissue mRNA" - ], - [ - "Caudate mRNA", - "Caudate mRNA" - ], - [ - "Cells - EBV-Transformed Lymphocytes mRNA", - "Cells - EBV-Transformed Lymphocytes mRNA" - ], - [ - "Cells - Transformed Fibroblasts mRNA", - "Cells - Transformed Fibroblasts mRNA" - ], - [ - "Cerebellar Cortex mRNA", - "Cerebellar Cortex mRNA" - ], - [ - "Cerebellar Hemisphere mRNA", - "Cerebellar Hemisphere mRNA" - ], - [ - "Cerebellum mRNA", - "Cerebellum mRNA" - ], - [ - "Cervix mRNA", - "Cervix mRNA" - ], - [ - "Colon - Sigmoid mRNA", - "Colon - Sigmoid mRNA" - ], - [ - "Colon - Transverse mRNA", - "Colon - Transverse mRNA" - ], - [ - "Coronary mRNA", - "Coronary mRNA" - ], - [ - "Esophagus - Gastroesophageal mRNA", - "Esophagus - Gastroesophageal mRNA" - ], - [ - "Esophagus - Mucosa mRNA", - "Esophagus - Mucosa mRNA" - ], - [ - "Esophagus - Muscularis mRNA", - "Esophagus - Muscularis mRNA" - ], - [ - "Fallopian Tube mRNA", - "Fallopian Tube mRNA" - ], - [ - "Frontal Cortex mRNA", - "Frontal Cortex mRNA" - ], - [ - "Heart - Atrial Appendage mRNA", - "Heart - Atrial Appendage mRNA" - ], - [ - "Heart - Left Ventricle mRNA", - "Heart - Left Ventricle mRNA" - ], - [ - "Hippocampus mRNA", - "Hippocampus mRNA" - ], - [ - "Hypothalamus mRNA", - "Hypothalamus mRNA" - ], - [ - "Kidney mRNA", - "Kidney mRNA" - ], - [ - "Liver mRNA", - "Liver mRNA" - ], - [ - "Lung mRNA", - "Lung mRNA" - ], - [ - "Muscle mRNA", - "Muscle mRNA" - ], - [ - "Nerve - Tibial mRNA", - "Nerve - Tibial mRNA" - ], - [ - "Nucleus Accumbens mRNA", - "Nucleus Accumbens mRNA" - ], - [ - "Ovary mRNA", - "Ovary mRNA" - ], - [ - "Pancreas mRNA", - "Pancreas mRNA" - ], - [ - "Pituitary Gland mRNA", - "Pituitary Gland mRNA" - ], - [ - "Prostate mRNA", - "Prostate mRNA" - ], - [ - "Putamen mRNA", - "Putamen mRNA" - ], - [ - "Salivary Gland mRNA", - "Salivary Gland mRNA" - ], - [ - "Skin - Not Sun Exposed (Suprapubic) mRNA", - "Skin - Not Sun Exposed (Suprapubic) mRNA" - ], - [ - "Skin - Sun Exposed (Lower leg) mRNA", - "Skin - Sun Exposed (Lower leg) mRNA" - ], - [ - "Small Intestine - Terminal Ileum mRNA", - "Small Intestine - Terminal Ileum mRNA" - ], - [ - "Spinal Cord mRNA", - "Spinal Cord mRNA" - ], - [ - "Spleen mRNA", - "Spleen mRNA" - ], - [ - "Stomach mRNA", - "Stomach mRNA" - ], - [ - "Substantia Nigra mRNA", - "Substantia Nigra mRNA" - ], - [ - "Testis mRNA", - "Testis mRNA" - ], - [ - "Thyroid mRNA", - "Thyroid mRNA" - ], - [ - "Tibial mRNA", - "Tibial mRNA" - ], - [ - "Uterus mRNA", - "Uterus mRNA" - ], - [ - "Vagina mRNA", - "Vagina mRNA" - ], - [ - "Whole Blood mRNA", - "Whole Blood mRNA" - ] - ], - "HB": [ - [ - "Cerebellum mRNA", - "Cerebellum mRNA" - ], - [ - "Prefrontal Cortex mRNA", - "Prefrontal Cortex mRNA" - ], - [ - "Primary Visual Cortex mRNA", - "Primary Visual Cortex mRNA" - ] - ], - "HCP": [ - [ - "Phenotypes", - "Phenotypes" - ] - ], - "HLC": [ - [ - "Phenotypes", - "Phenotypes" - ], - [ - "Liver mRNA", - "Liver mRNA" - ] - ], - "HLT": [ - [ - "Lung mRNA", - "Lung mRNA" - ] - ], - "HSB": [ - [ - "Phenotypes", - "Phenotypes" - ], - [ - "Amygdala mRNA", - "Amygdala mRNA" - ], - [ - "Cerebellar Cortex mRNA", - "Cerebellar Cortex mRNA" - ], - [ - "Dorsolateral Prefrontal Cortex mRNA", - "Dorsolateral Prefrontal Cortex mRNA" - ], - [ - "Hippocampus mRNA", - "Hippocampus mRNA" - ], - [ - "Inferior Temporal Cortex mRNA", - "Inferior Temporal Cortex mRNA" - ], - [ - "Medial Prefrontal Cortex mRNA", - "Medial Prefrontal Cortex mRNA" - ], - [ - "Mediodorsal Nucleus of Thalamus mRNA", - "Mediodorsal Nucleus of Thalamus mRNA" - ], - [ - "Orbital Prefrontal Cortex mRNA", - "Orbital Prefrontal Cortex mRNA" - ], - [ - "Posterior Inferior Parietal Cortex mRNA", - "Posterior Inferior Parietal Cortex mRNA" - ], - [ - "Posterior Superior Temporal Cortex mRNA", - "Posterior Superior Temporal Cortex mRNA" - ], - [ - "Primary Auditory (A1) Cortex mRNA", - "Primary Auditory (A1) Cortex mRNA" - ], - [ - "Primary Motor (M1) Cortex mRNA", - "Primary Motor (M1) Cortex mRNA" - ], - [ - "Primary Somatosensory (S1) Cortex mRNA", - "Primary Somatosensory (S1) Cortex mRNA" - ], - [ - "Primary Visual Cortex mRNA", - "Primary Visual Cortex mRNA" - ], - [ - "Striatum mRNA", - "Striatum mRNA" - ], - [ - "Ventrolateral Prefrontal Cortex mRNA", - "Ventrolateral Prefrontal Cortex mRNA" - ] - ], - "Islets-Gerling": [ - [ - "Phenotypes", - "Phenotypes" - ] - ], - "TIGEM-Retina-RNA-Seq": [ - [ - "Phenotypes", - "Phenotypes" - ], - [ - "Retina mRNA", - "Retina mRNA" - ] - ] - }, - "mouse": { - "AIL": [ - [ - "Phenotypes", - "Phenotypes" - ], - [ - "Genotypes", - "Genotypes" - ], - [ - "Hippocampus mRNA", - "Hippocampus mRNA" - ], - [ - "Prefrontal Cortex mRNA", - "Prefrontal Cortex mRNA" - ], - [ - "Striatum mRNA", - "Striatum mRNA" - ] - ], - "AIL-LGSM-F34-A": [ - [ - "Phenotypes", - "Phenotypes" - ] - ], - "AIL-LGSM-F34-F39-43-GBS": [ - [ - "Phenotypes", - "Phenotypes" - ] - ], - "AIL-LGSM-F34-GBS": [ - [ - "Phenotypes", - "Phenotypes" - ] - ], - "AIL-LGSM-F39-43-GBS": [ - [ - "Phenotypes", - "Phenotypes" - ] - ], - "AKXD": [ - [ - "Genotypes", - "Genotypes" - ], - [ - "Mammary Tumors mRNA", - "Mammary Tumors mRNA" - ] - ], - "AXBXA": [ - [ - "Phenotypes", - "Phenotypes" - ], - [ - "Genotypes", - "Genotypes" - ], - [ - "Bone Femur mRNA", - "Bone Femur mRNA" - ], - [ - "Eye mRNA", - "Eye mRNA" - ], - [ - "Heart mRNA", - "Heart mRNA" - ], - [ - "Liver mRNA", - "Liver mRNA" - ] - ], - "B6BTBRF2": [ - [ - "Phenotypes", - "Phenotypes" - ], - [ - "Genotypes", - "Genotypes" - ], - [ - "Liver mRNA", - "Liver mRNA" - ] - ], - "B6D2": [ - [ - "Phenotypes", - "Phenotypes" - ] - ], - "B6D2F2": [ - [ - "Genotypes", - "Genotypes" - ], - [ - "Brain mRNA", - "Brain mRNA" - ] - ], - "B6D2F2-PSU": [ - [ - "Phenotypes", - "Phenotypes" - ], - [ - "Genotypes", - "Genotypes" - ] - ], - "B6D2RI": [ - [ - "Phenotypes", - "Phenotypes" - ], - [ - "Hippocampus mRNA", - "Hippocampus mRNA" - ] - ], - "BDF2-1999": [ - [ - "Genotypes", - "Genotypes" - ], - [ - "Liver mRNA", - "Liver mRNA" - ] - ], - "BDF2-2005": [ - [ - "Genotypes", - "Genotypes" - ], - [ - "Striatum mRNA", - "Striatum mRNA" - ] - ], - "BHF2": [ - [ - "Phenotypes", - "Phenotypes" - ], - [ - "Genotypes", - "Genotypes" - ], - [ - "Adipose mRNA", - "Adipose mRNA" - ], - [ - "Brain mRNA", - "Brain mRNA" - ], - [ - "Liver mRNA", - "Liver mRNA" - ] - ], - "BHHBF2": [ - [ - "Genotypes", - "Genotypes" - ], - [ - "Adipose mRNA", - "Adipose mRNA" - ], - [ - "Brain mRNA", - "Brain mRNA" - ], - [ - "Liver mRNA", - "Liver mRNA" - ], - [ - "Muscle mRNA", - "Muscle mRNA" - ] - ], - "BXD": [ - [ - "Phenotypes", - "Phenotypes" - ], - [ - "Genotypes", - "Genotypes" - ], - [ - "Adipose mRNA", - "Adipose mRNA" - ], - [ - "Adipose Proteome", - "Adipose Proteome" - ], - [ - "Adrenal Gland mRNA", - "Adrenal Gland mRNA" - ], - [ - "Amygdala mRNA", - "Amygdala mRNA" - ], - [ - "Bone Femur mRNA", - "Bone Femur mRNA" - ], - [ - "Brain mRNA", - "Brain mRNA" - ], - [ - "Cartilage mRNA", - "Cartilage mRNA" - ], - [ - "Cerebellum mRNA", - "Cerebellum mRNA" - ], - [ - "Eye mRNA", - "Eye mRNA" - ], - [ - "Fecal Metabolome", - "Fecal Metabolome" - ], - [ - "Gastrointestinal mRNA", - "Gastrointestinal mRNA" - ], - [ - "Heart mRNA", - "Heart mRNA" - ], - [ - "Hematopoietic Cells mRNA", - "Hematopoietic Cells mRNA" - ], - [ - "Hippocampal Precursor Cells mRNA", - "Hippocampal Precursor Cells mRNA" - ], - [ - "Hippocampus mRNA", - "Hippocampus mRNA" - ], - [ - "Hypothalamus mRNA", - "Hypothalamus mRNA" - ], - [ - "Kidney mRNA", - "Kidney mRNA" - ], - [ - "Liver Metabolome", - "Liver Metabolome" - ], - [ - "Liver mRNA", - "Liver mRNA" - ], - [ - "Liver Proteome", - "Liver Proteome" - ], - [ - "Lung mRNA", - "Lung mRNA" - ], - [ - "Midbrain mRNA", - "Midbrain mRNA" - ], - [ - "Muscle mRNA", - "Muscle mRNA" - ], - [ - "Neocortex mRNA", - "Neocortex mRNA" - ], - [ - "Nucleus Accumbens mRNA", - "Nucleus Accumbens mRNA" - ], - [ - "Pituitary Gland mRNA", - "Pituitary Gland mRNA" - ], - [ - "Prefrontal Cortex mRNA", - "Prefrontal Cortex mRNA" - ], - [ - "Retina mRNA", - "Retina mRNA" - ], - [ - "Spleen mRNA", - "Spleen mRNA" - ], - [ - "Striatum mRNA", - "Striatum mRNA" - ], - [ - "T Cell (helper) mRNA", - "T Cell (helper) mRNA" - ], - [ - "T Cell (regulatory) mRNA", - "T Cell (regulatory) mRNA" - ], - [ - "Ventral Tegmental Area mRNA", - "Ventral Tegmental Area mRNA" - ] - ], - "BXD-Bone": [ - [ - "Phenotypes", - "Phenotypes" - ] - ], - "BXD-Harvested": [ - [ - "Phenotypes", - "Phenotypes" - ], - [ - "Genotypes", - "Genotypes" - ], - [ - "Hippocampus mRNA", - "Hippocampus mRNA" - ], - [ - "Liver mRNA", - "Liver mRNA" - ] - ], - "BXD300": [ - [ - "Phenotypes", - "Phenotypes" - ], - [ - "Genotypes", - "Genotypes" - ], - [ - "Liver mRNA", - "Liver mRNA" - ] - ], - "BXH": [ - [ - "Phenotypes", - "Phenotypes" - ], - [ - "Genotypes", - "Genotypes" - ], - [ - "Bone Femur mRNA", - "Bone Femur mRNA" - ], - [ - "Cartilage mRNA", - "Cartilage mRNA" - ], - [ - "Liver mRNA", - "Liver mRNA" - ] - ], - "C57BL-6JxC57BL-6NJF2": [ - [ - "Phenotypes", - "Phenotypes" - ], - [ - "Genotypes", - "Genotypes" - ] - ], - "CFW": [ - [ - "Phenotypes", - "Phenotypes" - ], - [ - "Hippocampus mRNA", - "Hippocampus mRNA" - ], - [ - "Prefrontal Cortex mRNA", - "Prefrontal Cortex mRNA" - ], - [ - "Striatum mRNA", - "Striatum mRNA" - ] - ], - "CIE-INIA": [ - [ - "Phenotypes", - "Phenotypes" - ], - [ - "LCM Brain Regions mRNA", - "LCM Brain Regions mRNA" - ] - ], - "CIE-RMA": [ - [ - "Phenotypes", - "Phenotypes" - ], - [ - "Hippocampus mRNA", - "Hippocampus mRNA" - ], - [ - "Midbrain mRNA", - "Midbrain mRNA" - ] - ], - "CMS": [ - [ - "Phenotypes", - "Phenotypes" - ] - ], - "CTB6F2": [ - [ - "Phenotypes", - "Phenotypes" - ], - [ - "Genotypes", - "Genotypes" - ], - [ - "Adipose mRNA", - "Adipose mRNA" - ], - [ - "Brain mRNA", - "Brain mRNA" - ], - [ - "Liver mRNA", - "Liver mRNA" - ], - [ - "Muscle mRNA", - "Muscle mRNA" - ] - ], - "CXB": [ - [ - "Phenotypes", - "Phenotypes" - ], - [ - "Genotypes", - "Genotypes" - ], - [ - "Heart mRNA", - "Heart mRNA" - ], - [ - "Hippocampus mRNA", - "Hippocampus mRNA" - ], - [ - "Liver mRNA", - "Liver mRNA" - ], - [ - "Spleen mRNA", - "Spleen mRNA" - ] - ], - "D2GM": [ - [ - "Phenotypes", - "Phenotypes" - ], - [ - "Retina mRNA", - "Retina mRNA" - ] - ], - "HS": [ - [ - "Phenotypes", - "Phenotypes" - ], - [ - "Hippocampus mRNA", - "Hippocampus mRNA" - ], - [ - "Liver mRNA", - "Liver mRNA" - ], - [ - "Lung mRNA", - "Lung mRNA" - ] - ], - "HS-CC": [ - [ - "Striatum mRNA", - "Striatum mRNA" - ] - ], - "LGSM-AIG34_50-56-GBS": [ - [ - "Phenotypes", - "Phenotypes" - ] - ], - "LXS": [ - [ - "Phenotypes", - "Phenotypes" - ], - [ - "Genotypes", - "Genotypes" - ], - [ - "Hippocampus mRNA", - "Hippocampus mRNA" - ], - [ - "Prefrontal Cortex mRNA", - "Prefrontal Cortex mRNA" - ] - ], - "Linsenbardt-Boehm": [ - [ - "Phenotypes", - "Phenotypes" - ], - [ - "Genotypes", - "Genotypes" - ] - ], - "MDP": [ - [ - "Phenotypes", - "Phenotypes" - ], - [ - "Genotypes", - "Genotypes" - ], - [ - "Bone Femur mRNA", - "Bone Femur mRNA" - ], - [ - "Dorsal Root Ganglia mRNA", - "Dorsal Root Ganglia mRNA" - ], - [ - "Hippocampus mRNA", - "Hippocampus mRNA" - ], - [ - "Liver mRNA", - "Liver mRNA" - ], - [ - "Spleen mRNA", - "Spleen mRNA" - ] - ], - "NZBXFVB-N2": [ - [ - "Phenotypes", - "Phenotypes" - ], - [ - "Mammary Tumors mRNA", - "Mammary Tumors mRNA" - ] - ], - "Retina-RGC-Rheaume": [ - [ - "Phenotypes", - "Phenotypes" - ], - [ - "Retina Single-cell RNA-Seq", - "Retina Single-cell RNA-Seq" - ] - ], - "SOTNOT-OHSU": [ - [ - "Genotypes", - "Genotypes" - ] - ] - }, - "poplar": { - "Poplar": [ - [ - "Phenotypes", - "Phenotypes" - ] - ] - }, - "rat": { - "HRDP": [ - [ - "Phenotypes", - "Phenotypes" - ], - [ - "Genotypes", - "Genotypes" - ] - ], - "HSNIH-Palmer": [ - [ - "Phenotypes", - "Phenotypes" - ], - [ - "Infralimbic Cortex mRNA", - "Infralimbic Cortex mRNA" - ], - [ - "Lateral Habenula mRNA", - "Lateral Habenula mRNA" - ], - [ - "Nucleus Accumbens mRNA", - "Nucleus Accumbens mRNA" - ], - [ - "Orbitofrontal Cortex mRNA", - "Orbitofrontal Cortex mRNA" - ], - [ - "Prelimbic Cortex mRNA", - "Prelimbic Cortex mRNA" - ] - ], - "HSNIH-RGSMC": [ - [ - "Phenotypes", - "Phenotypes" - ] - ], - "HXBBXH": [ - [ - "Phenotypes", - "Phenotypes" - ], - [ - "Genotypes", - "Genotypes" - ], - [ - "Adipose mRNA", - "Adipose mRNA" - ], - [ - "Adrenal Gland mRNA", - "Adrenal Gland mRNA" - ], - [ - "Heart mRNA", - "Heart mRNA" - ], - [ - "Hippocampus mRNA", - "Hippocampus mRNA" - ], - [ - "Kidney mRNA", - "Kidney mRNA" - ], - [ - "Liver mRNA", - "Liver mRNA" - ], - [ - "Peritoneal Fat mRNA", - "Peritoneal Fat mRNA" - ] - ], - "SRxSHRSPF2": [ - [ - "Eye mRNA", - "Eye mRNA" - ] - ] - }, - "soybean": { - "J12XJ58F11": [ - [ - "Phenotypes", - "Phenotypes" - ], - [ - "Genotypes", - "Genotypes" - ] - ], - "J12XJ58F2": [ - [ - "Phenotypes", - "Phenotypes" - ] - ] - }, - "tomato": { - "LXP": [ - [ - "Phenotypes", - "Phenotypes" - ] - ] - } - } -} diff --git a/wqflask/wqflask/static/new/javascript/dataset_select_menu_orig.js b/wqflask/wqflask/static/new/javascript/dataset_select_menu_orig.js index 794804f4..ee7be68c 100644 --- a/wqflask/wqflask/static/new/javascript/dataset_select_menu_orig.js +++ b/wqflask/wqflask/static/new/javascript/dataset_select_menu_orig.js @@ -6,6 +6,7 @@ process_json = function(data) { return apply_default(); } }; + $.ajax('/api/v_pre1/gen_dropdown', { dataType: 'json', success: process_json diff --git a/wqflask/wqflask/templates/base.html b/wqflask/wqflask/templates/base.html index f9d4e859..07c1b48e 100644 --- a/wqflask/wqflask/templates/base.html +++ b/wqflask/wqflask/templates/base.html @@ -72,6 +72,7 @@ <li><a href="httP://datafiles.genenetwork.org">Interplanetary File System</a></li> </ul> </li> + {% if g.user_session %} <li class=""> <a href="/collections/list">Collections <span class="badge badge-info">{{ g.user_session.num_collections }}</span> @@ -93,6 +94,7 @@ <a id="login_in" href="/n/login">Sign in</a> {% endif %} </li> + {% endif %} <!-- <li style="margin-left: 20px;"> <a href="http://gn2-staging.genenetwork.org" style="font-weight: bold;" >Use Staging Branch</a> diff --git a/wqflask/wqflask/user_manager.py b/wqflask/wqflask/user_manager.py index 1b27d7cb..ce76e0e8 100644 --- a/wqflask/wqflask/user_manager.py +++ b/wqflask/wqflask/user_manager.py @@ -351,7 +351,8 @@ class UserSession(object): logger.debug("At end of delete_session") @app.before_request -def before_request(): +def get_cookie(): + logger.info("@app.before_request get cookie") g.user_session = UserSession() g.cookie_session = AnonUser() diff --git a/wqflask/wqflask/user_session.py b/wqflask/wqflask/user_session.py index fd1779fb..4c2305ba 100644 --- a/wqflask/wqflask/user_session.py +++ b/wqflask/wqflask/user_session.py @@ -25,6 +25,19 @@ logger = getLogger(__name__) THREE_DAYS = 60 * 60 * 24 * 3 THIRTY_DAYS = 60 * 60 * 24 * 30 +@app.before_request +def get_user_session(): + logger.info("@app.before_request get_session") + g.user_session = UserSession() + +@app.after_request +def set_user_session(response): + if hasattr(g, 'user_session'): + if not request.cookies.get(g.user_session.cookie_name): + response.set_cookie(g.user_session.cookie_name, g.user_session.cookie) + return response + + def verify_cookie(cookie): the_uuid, separator, the_signature = cookie.partition(':') assert len(the_uuid) == 36, "Is session_id a uuid?" @@ -280,12 +293,4 @@ class UserSession(object): Redis.delete(self.redis_key) self.logged_in = False -@app.before_request -def before_request(): - g.user_session = UserSession() -@app.after_request -def set_cookie(response): - if not request.cookies.get(g.user_session.cookie_name): - response.set_cookie(g.user_session.cookie_name, g.user_session.cookie) - return response
\ No newline at end of file diff --git a/wqflask/wqflask/views.py b/wqflask/wqflask/views.py index 7d3dfa48..44752246 100644 --- a/wqflask/wqflask/views.py +++ b/wqflask/wqflask/views.py @@ -80,6 +80,7 @@ logger = utility.logger.getLogger(__name__ ) @app.before_request def connect_db(): + logger.info("@app.before_request connect_db") db = getattr(g, '_database', None) if db is None: logger.debug("Get new database connector") |