diff options
| -rw-r--r-- | wqflask/tests/wqflask/marker_regression/test_plink_mapping.py | 3 | ||||
| -rw-r--r-- | wqflask/tests/wqflask/marker_regression/test_run_mapping.py | 9 |
2 files changed, 1 insertions, 11 deletions
diff --git a/wqflask/tests/wqflask/marker_regression/test_plink_mapping.py b/wqflask/tests/wqflask/marker_regression/test_plink_mapping.py index b827fd0f..a5fa0c04 100644 --- a/wqflask/tests/wqflask/marker_regression/test_plink_mapping.py +++ b/wqflask/tests/wqflask/marker_regression/test_plink_mapping.py @@ -12,8 +12,6 @@ class AttributeSetter: def __init__(self, obj): for key, val in obj.items(): setattr(self, key, val) - - class TestPlinkMapping(unittest.TestCase): def test_build_line_list(self): @@ -72,7 +70,6 @@ Expected_2\there mock_line_list.side_effect = [["0", "AACCAT", "T98.6", "0.89"], [ "2", "AATA", "B45", "0.3"], ["121", "ACG", "B56.4", "NA"]] - # print("sdfsfdf",species.chromosomes) with mock.patch("builtins.open", mock.mock_open(read_data=fake_file)) as mock_open: parse_results = parse_plink_output( output_filename="P1_file", species=species) diff --git a/wqflask/tests/wqflask/marker_regression/test_run_mapping.py b/wqflask/tests/wqflask/marker_regression/test_run_mapping.py index 61bc8a1d..bba9de05 100644 --- a/wqflask/tests/wqflask/marker_regression/test_run_mapping.py +++ b/wqflask/tests/wqflask/marker_regression/test_run_mapping.py @@ -2,6 +2,7 @@ import unittest from unittest import mock from wqflask.marker_regression.run_mapping import get_genofile_samplelist from wqflask.marker_regression.run_mapping import geno_db_exists +from wqflask.marker_regression.run_mapping import write_input_for_browser class AttributeSetter: def __init__(self,obj): @@ -21,20 +22,16 @@ class TestRunMapping(unittest.TestCase): def tearDown(self): self.dataset=AttributeSetter({"group":{"location":"~/genofiles/g1_file"}}) - def test_get_genofile_samplelist(self): - #location true and sample list true results_1=get_genofile_samplelist(self.dataset) self.assertEqual(results_1,["S1","S2","S3","S4"]) - #return empty array self.group.genofile="~/genofiles/g2_file" result_2=get_genofile_samplelist(self.dataset) self.assertEqual(result_2,[]) @mock.patch("wqflask.marker_regression.run_mapping.data_set") def test_geno_db_exists(self,mock_data_set): - # mock_data_set.create_dataset_side_effect=None mock_data_set.create_dataset.side_effect=[AttributeSetter({}),Exception()] results_no_error=geno_db_exists(self.dataset) results_with_error=geno_db_exists(self.dataset) @@ -46,7 +43,3 @@ class TestRunMapping(unittest.TestCase): - - - - |