diff options
| -rw-r--r-- | wqflask/wqflask/my_pylmm/pyLMM/convertlmm.py | 10 |
1 files changed, 8 insertions, 2 deletions
diff --git a/wqflask/wqflask/my_pylmm/pyLMM/convertlmm.py b/wqflask/wqflask/my_pylmm/pyLMM/convertlmm.py index 3b6b5d70..4312fed0 100644 --- a/wqflask/wqflask/my_pylmm/pyLMM/convertlmm.py +++ b/wqflask/wqflask/my_pylmm/pyLMM/convertlmm.py @@ -1,5 +1,5 @@ -# This is a converter for common LMM formats, so as to keep complexity -# outside the main routines. +# This is a converter for common LMM formats, so as to keep file +# reader complexity outside the main routines. # Copyright (C) 2015 Pjotr Prins (pjotr.prins@thebird.nl) # @@ -31,6 +31,12 @@ python convertlmm.py [--plink] [--prefix out_basename] [--kinship kfile] [--phen Convert files for runlmm.py processing. Writes to stdout by default. try --help for more information + +Examples: + + python ./my_pylmm/pyLMM/convertlmm.py --plink --pheno data/test_snps.132k.clean.noX.fake.phenos > test.pheno + + python ./my_pylmm/pyLMM/convertlmm.py --plink --pheno data/test_snps.132k.clean.noX.fake.phenos --geno data/test_snps.132k.clean.noX > test.geno """ # if len(args) == 0: |