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-rw-r--r--wqflask/tests/wqflask/show_trait/test_export_trait_data.py49
1 files changed, 49 insertions, 0 deletions
diff --git a/wqflask/tests/wqflask/show_trait/test_export_trait_data.py b/wqflask/tests/wqflask/show_trait/test_export_trait_data.py
index 98d599b1..adecbf36 100644
--- a/wqflask/tests/wqflask/show_trait/test_export_trait_data.py
+++ b/wqflask/tests/wqflask/show_trait/test_export_trait_data.py
@@ -1,10 +1,59 @@
import unittest
+from unittest import mock
from wqflask.show_trait.export_trait_data import dict_to_sorted_list
from wqflask.show_trait.export_trait_data import cmp_samples
+from wqflask.show_trait.export_trait_data import export_sample_table
class TestExportTraits(unittest.TestCase):
"""Test methods related to converting dict to sortedlist"""
+ @mock.patch("wqflask.show_trait.export_trait_data.dict_to_sorted_list")
+ @mock.patch("wqflask.show_trait.export_trait_data.get_export_metadata")
+ def test_export_sample_table(self, exp_metadata, dict_list):
+ """test for exporting sample table"""
+ targs_obj = {
+ "export_data": """{
+ "primary_samples": [
+ {
+ "other": "germanotta",
+ "name": "Sauroniops"
+ }
+ ],
+ "other_samples": [
+ {
+ "se": 1,
+ "num_cases": 4,
+ "value": 6,
+ "name": 3
+ }
+ ]
+ }""",
+ "trait_display_name": "Hair_color",
+ "trait_id": "23177fdc-312e-4084-ad0c-f3eae785fff5",
+ "dataset": {
+ }
+ }
+ exp_metadata.return_value = [["Phenotype ID:0a2be192-57f5-400b-bbbd-0cf50135995f"], ['Group:gp1'], ["Phenotype:p1"], [
+ "Authors:N/A"], ["Title:research1"], ["Journal:N/A"], ["Dataset Link: http://gn1.genenetwork.org/webqtl/main.py?FormID=sharinginfo&InfoPageName=name1"], []]
+ expected = ('Hair_color',
+ [['Phenotype ID:0a2be192-57f5-400b-bbbd-0cf50135995f'],
+ ['Group:gp1'],
+ ['Phenotype:p1'],
+ ['Authors:N/A'],
+ ['Title:research1'],
+ ['Journal:N/A'],
+ ['Dataset Link: '
+ 'http://gn1.genenetwork.org/webqtl/main.py?FormID=sharinginfo&InfoPageName=name1'],
+ [],
+ ['Sauroniops', 'germanotta'],
+ [3, 6, 1, 4]])
+
+ dict_list.side_effect = [['Sauroniops', 'germanotta'], [3, 6, 1, 4]]
+
+ self.assertEqual(export_sample_table(targs_obj), expected)
+ exp_metadata.assert_called_with(
+ "23177fdc-312e-4084-ad0c-f3eae785fff5", {})
+ self.assertEqual(dict_list.call_count, 2)
def test_dict_to_sortedlist(self):
"""test for conversion of dict to sorted list"""