diff options
| -rw-r--r-- | wqflask/wqflask/views.py | 40 |
1 files changed, 28 insertions, 12 deletions
diff --git a/wqflask/wqflask/views.py b/wqflask/wqflask/views.py index 63f3b3bb..2e13451d 100644 --- a/wqflask/wqflask/views.py +++ b/wqflask/wqflask/views.py @@ -64,6 +64,7 @@ from wqflask.marker_regression import display_mapping_results from wqflask.network_graph import network_graph from wqflask.correlation.show_corr_results import set_template_vars from wqflask.correlation.correlation_gn3_api import compute_correlation +from wqflask.correlation.rust_correlation import compute_correlation_rust from wqflask.correlation_matrix import show_corr_matrix from wqflask.correlation import corr_scatter_plot # from wqflask.wgcna import wgcna_analysis @@ -316,6 +317,7 @@ def wcgna_results(): results = run_wgcna(dict(request.form)) return render_template("gn3_wgcna_results.html", **results) + @app.route("/ctl_setup", methods=('POST',)) def ctl_setup(): # We are going to get additional user input for the analysis @@ -323,7 +325,6 @@ def ctl_setup(): return render_template("ctl_setup.html", **request.form) - @app.route("/ctl_results", methods=["POST"]) def ctl_results(): ctl_results = run_ctl(request.form) @@ -334,10 +335,11 @@ def ctl_results(): def fetch_network_files(file_name, file_type): file_path = f"{file_name}.{file_type}" - file_path = os.path.join("/tmp/",file_path) + file_path = os.path.join("/tmp/", file_path) return send_file(file_path) + @app.route("/intro") def intro(): doc = Docs("intro", request.args) @@ -447,6 +449,7 @@ def export_collection_csv(): mimetype='text/csv', headers={"Content-Disposition": "attachment;filename=" + out_file[0] + ".csv"}) + @app.route('/export_perm_data', methods=('POST',)) def export_perm_data(): """CSV file consisting of the permutation data for the mapping results""" @@ -657,7 +660,8 @@ def loading_page(): dataset = create_dataset(start_vars['dataset']) start_vars['trait_name'] = start_vars['trait_id'] if dataset.type == "Publish": - start_vars['trait_name'] = dataset.group.code + "_" + start_vars['trait_name'] + start_vars['trait_name'] = dataset.group.code + \ + "_" + start_vars['trait_name'] samples = dataset.group.samplelist if 'genofile' in start_vars: if start_vars['genofile'] != "": @@ -674,9 +678,11 @@ def loading_page(): n_samples += 1 start_vars['n_samples'] = n_samples - start_vars['vals_hash'] = generate_hash_of_string(str(sample_vals_dict)) - if start_vars['dataset'] != "Temp": # Currently can't get diff for temp traits - start_vars['vals_diff'] = get_diff_of_vals(sample_vals_dict, str(start_vars['trait_id'] + ":" + str(start_vars['dataset']))) + start_vars['vals_hash'] = generate_hash_of_string( + str(sample_vals_dict)) + if start_vars['dataset'] != "Temp": # Currently can't get diff for temp traits + start_vars['vals_diff'] = get_diff_of_vals(sample_vals_dict, str( + start_vars['trait_id'] + ":" + str(start_vars['dataset']))) start_vars['wanted_inputs'] = initial_start_vars['wanted_inputs'] @@ -777,8 +783,8 @@ def mapping_results_page(): if not template_vars.pair_scan: template_vars.js_data = json.dumps(template_vars.js_data, - default=json_default_handler, - indent=" ") + default=json_default_handler, + indent=" ") result = template_vars.__dict__ @@ -857,14 +863,25 @@ def network_graph_page(): @app.route("/corr_compute", methods=('POST',)) def corr_compute_page(): correlation_results = compute_correlation(request.form, compute_all=True) + correlation_results = set_template_vars(request.form, correlation_results) return render_template("correlation_page.html", **correlation_results) @app.route("/test_corr_compute", methods=["POST"]) def test_corr_compute_page(): - correlation_data = compute_correlation(request.form, compute_all=True) - return render_template("test_correlation_page.html", **correlation_data) + + start_vars = request.form + + correlation_results = compute_correlation_rust(start_vars, + start_vars["corr_type"], + start_vars['corr_sample_method'], + int(start_vars.get("corr_return_results", 500))) + + correlation_results = set_template_vars(request.form, correlation_results) + + return render_template("correlation_page.html", **correlation_results) + # return render_template("test_correlation_page.html", **correlation_data) @app.route("/corr_matrix", methods=('POST',)) @@ -993,9 +1010,8 @@ def display_diffs_users(): author = g.user_session.record.get(b'user_name').decode("utf-8") if os.path.exists(DIFF_DIR): files = os.listdir(DIFF_DIR) - files = filter(lambda x: not(x.endswith((".approved", ".rejected"))) \ + files = filter(lambda x: not(x.endswith((".approved", ".rejected"))) and author in x, files) return render_template("display_files_user.html", files=files) - |