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-rw-r--r--wqflask/wqflask/correlation/show_corr_results.py7
1 files changed, 4 insertions, 3 deletions
diff --git a/wqflask/wqflask/correlation/show_corr_results.py b/wqflask/wqflask/correlation/show_corr_results.py
index 0795f113..c4cb0145 100644
--- a/wqflask/wqflask/correlation/show_corr_results.py
+++ b/wqflask/wqflask/correlation/show_corr_results.py
@@ -183,7 +183,7 @@ class CorrelationResults(object):
#XZ, 01/08/2009: read the first line
line = dataset_file.readline()
- dataset_strains = webqtlUtil.readLineCSV(line)[1:]
+ dataset_strains = webqtlUtil.readLineCSV(line)[1:]
self.this_trait_vals = []
for item in dataset_strains:
@@ -210,7 +210,7 @@ class CorrelationResults(object):
range_chr_as_int = order_id
for _trait_counter, trait in enumerate(self.correlation_data.keys()[:self.return_number]):
- trait_object = GeneralTrait(dataset=self.target_dataset, name=trait, get_qtl_info=True)
+ trait_object = GeneralTrait(dataset=self.target_dataset, name=trait, get_qtl_info=True, get_sample_info=False)
if self.dataset.type == "ProbeSet" or self.dataset.type == "Geno":
#ZS: Convert trait chromosome to an int for the location range option
@@ -558,7 +558,8 @@ class CorrelationResults(object):
else:
sample_r, sample_p = scipy.stats.spearmanr(self.this_trait_vals, target_vals)
- self.correlation_data[trait] = [sample_r, sample_p, num_overlap]
+ if num_overlap > 5:
+ self.correlation_data[trait] = [sample_r, sample_p, num_overlap]
"""