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-rw-r--r--wqflask/maintenance/dataset/load_phenotypes.py15
1 files changed, 14 insertions, 1 deletions
diff --git a/wqflask/maintenance/dataset/load_phenotypes.py b/wqflask/maintenance/dataset/load_phenotypes.py
index 91bc2d15..274b8593 100644
--- a/wqflask/maintenance/dataset/load_phenotypes.py
+++ b/wqflask/maintenance/dataset/load_phenotypes.py
@@ -1,13 +1,26 @@
import sys
+import csv
import utilities
def main(argv):
+ #
config = utilities.get_config(argv[1])
print "config:"
for item in config.items('config'):
print "\t%s" % (str(item))
-
+ #
+ datafile = open(config.get('config', 'datafile'), 'r')
+ phenotypedata = csv.reader(datafile, delimiter='\t', quotechar='"')
+ for row in phenotypedata:
+ #print row
+ pass
+ #
+ metafile = open(config.get('config', 'metafile'), 'r')
+ phenotypemeta = csv.reader(metafile, delimiter='\t', quotechar='"')
+ for row in phenotypemeta:
+ print row[1]
+
if __name__ == "__main__":
print "command line arguments:\n\t%s" % sys.argv
main(sys.argv)