diff options
| -rwxr-xr-x | wqflask/wqflask/correlation_matrix/show_corr_matrix.py | 4 | ||||
| -rwxr-xr-x | wqflask/wqflask/show_trait/show_trait.py | 9 | ||||
| -rwxr-xr-x | wqflask/wqflask/static/packages/bootstrap/css/bootstrap.css | 3 | ||||
| -rwxr-xr-x | wqflask/wqflask/static/packages/bootstrap/css/docs.css | 8 | ||||
| -rwxr-xr-x | wqflask/wqflask/templates/base.html | 9 | ||||
| -rwxr-xr-x | wqflask/wqflask/templates/index_page.html | 4 |
6 files changed, 20 insertions, 17 deletions
diff --git a/wqflask/wqflask/correlation_matrix/show_corr_matrix.py b/wqflask/wqflask/correlation_matrix/show_corr_matrix.py index 38b7de4b..8bd5919b 100755 --- a/wqflask/wqflask/correlation_matrix/show_corr_matrix.py +++ b/wqflask/wqflask/correlation_matrix/show_corr_matrix.py @@ -191,7 +191,9 @@ class CorrelationMatrix(object): print("corr_results:", pf(corr_results_to_list)) m = robjects.r.matrix(corr_results_to_list, nrow=len(cols)) - pca = stats.princomp(m, cor = "TRUE") + eigen = base.eigen(m) + print("eigen:", eigen) + #pca = stats.princomp(m, cor = "TRUE") print("pca:", pca) return pca diff --git a/wqflask/wqflask/show_trait/show_trait.py b/wqflask/wqflask/show_trait/show_trait.py index 04cde060..62411640 100755 --- a/wqflask/wqflask/show_trait/show_trait.py +++ b/wqflask/wqflask/show_trait/show_trait.py @@ -37,9 +37,14 @@ class ShowTrait(object): def __init__(self, kw): print("in ShowTrait, kw are:", kw) - self.trait_id = kw['trait_id'] - helper_functions.get_species_dataset_trait(self, kw) + if kw['trait_id'] != None: + self.temp_trait = False + self.trait_id = kw['trait_id'] + helper_functions.get_species_dataset_trait(self, kw) + else: + self.temp_trait = True + self.create_temp_trait() #self.dataset.group.read_genotype_file() diff --git a/wqflask/wqflask/static/packages/bootstrap/css/bootstrap.css b/wqflask/wqflask/static/packages/bootstrap/css/bootstrap.css index cf6b33f4..2c93dac8 100755 --- a/wqflask/wqflask/static/packages/bootstrap/css/bootstrap.css +++ b/wqflask/wqflask/static/packages/bootstrap/css/bootstrap.css @@ -1390,8 +1390,6 @@ pre code { .container { padding-right: 15px; padding-left: 15px; - margin-right: auto; - margin-left: auto; } /* @media (min-width: 768px) { @@ -3875,7 +3873,6 @@ select[multiple].input-group-sm > .input-group-btn > .btn { .navbar { position: relative; min-height: 50px; - margin-bottom: 20px; border: 1px solid transparent; } /* diff --git a/wqflask/wqflask/static/packages/bootstrap/css/docs.css b/wqflask/wqflask/static/packages/bootstrap/css/docs.css index 186ec051..50710348 100755 --- a/wqflask/wqflask/static/packages/bootstrap/css/docs.css +++ b/wqflask/wqflask/static/packages/bootstrap/css/docs.css @@ -12,7 +12,7 @@ body { position: relative; - padding-top: 40px; + padding-top: 0px; } /* Code in headings */ @@ -36,7 +36,7 @@ body > .navbar .brand { padding-right: 0; padding-left: 0; margin-left: 20px; - float: right; + float: left; font-weight: bold; color: #336699; text-shadow: 0 1px 0 rgba(255,255,255,.1), 0 0 30px rgba(255,255,255,.125); @@ -92,7 +92,7 @@ hr.soften { position: relative; padding: 0px 0; color: #336699; - text-align: center; + text-align: left; text-shadow: 0 1px 3px rgba(0,0,0,.4), 0 0 30px rgba(0,0,0,.075); background: #d5d5d5; /* Old browsers */ @@ -931,7 +931,7 @@ form.bs-docs-example { /* center align subhead text like the masthead */ .subhead h1, .subhead p { - text-align: center; + text-align: left; } /* Marketing on home */ diff --git a/wqflask/wqflask/templates/base.html b/wqflask/wqflask/templates/base.html index 3f89e7a1..240481cc 100755 --- a/wqflask/wqflask/templates/base.html +++ b/wqflask/wqflask/templates/base.html @@ -57,13 +57,12 @@ {% endmacro %} -<body style="width: 98% !important;"> - <!-- Navbar - ================================================== --> +<body style="width: 1500px !important;"> + <!-- Navbar ================================================== --> - <div class="navbar navbar-inverse navbar-fixed-top" role="navigation"> + <div class="navbar navbar-inverse navbar-static-top pull-left" role="navigation"> - <div class="container"> + <div class="container-fluid" style="width: 1500px !important;"> <!-- Brand and toggle get grouped for better mobile display --> <div class="navbar-header"> <a class="navbar-brand" href="/">GeneNetwork</a> diff --git a/wqflask/wqflask/templates/index_page.html b/wqflask/wqflask/templates/index_page.html index df8fc5bb..b3fd3f6f 100755 --- a/wqflask/wqflask/templates/index_page.html +++ b/wqflask/wqflask/templates/index_page.html @@ -4,13 +4,13 @@ <!-- Start of body --> <header class="jumbotron subhead" id="overview"> - <div class="container" style="width: 1200px !important;"> + <div class="container"> <h1>GeneNetwork</h1> <p class="lead">Open source bioinformatics for systems genetics</p> </div> </header> - <div class="container" style="width: 1200px !important;"> + <div class="container-fluid"> {{ flash_me() }} |