diff options
| -rw-r--r-- | misc/find.txt | 1 | ||||
| -rw-r--r-- | misc/python_stuff.txt | 1 | ||||
| -rwxr-xr-x | wqflask/base/webqtlCaseData.py | 69 | ||||
| -rwxr-xr-x | wqflask/base/webqtlTrait.py | 52 | ||||
| -rwxr-xr-x | wqflask/utility/webqtlUtil.py | 7 | ||||
| -rwxr-xr-x | wqflask/wqflask/show_trait/DataEditingPage.py | 276 | ||||
| -rw-r--r-- | wqflask/wqflask/show_trait/show_trait_page.py | 27 | ||||
| -rw-r--r-- | wqflask/wqflask/templates/trait_data_and_analysis.html | 24 |
8 files changed, 261 insertions, 196 deletions
diff --git a/misc/find.txt b/misc/find.txt new file mode 100644 index 00000000..5c792d80 --- /dev/null +++ b/misc/find.txt @@ -0,0 +1 @@ +find | grep _____ diff --git a/misc/python_stuff.txt b/misc/python_stuff.txt new file mode 100644 index 00000000..f36fe338 --- /dev/null +++ b/misc/python_stuff.txt @@ -0,0 +1 @@ +Classes should always inherit "object"
\ No newline at end of file diff --git a/wqflask/base/webqtlCaseData.py b/wqflask/base/webqtlCaseData.py index f68354be..7805df06 100755 --- a/wqflask/base/webqtlCaseData.py +++ b/wqflask/base/webqtlCaseData.py @@ -24,28 +24,59 @@ # # Last updated by GeneNetwork Core Team 2010/10/20 -class webqtlCaseData: - """ - one case data in one trait - """ +print("Mr. Mojo Risin 2") - val = None #Trait Value - var = None #Trait Variance - N = None #Number of individuals +class webqtlCaseData(object): + """one case data in one trait + + """ - def __init__(self, val=val, var=var, N=N): - self.val = val - self.var = var - self.N = N + def __init__(self, name, value=None, variance=None, num_cases=None): + self.name = name + self.value = value # Trait Value + self.variance = variance # Trait Variance + self.num_cases = num_cases # Number of individuals/cases + self.this_id = None # Set a sane default (can't be just "id" cause that's a reserved word) - def __str__(self): + def __repr__(self): str = "" - if self.val != None: - str += "value=%2.3f" % self.val - if self.var != None: - str += " variance=%2.3f" % self.var - if self.N != None: - str += " ndata=%d" % self.N + if self.value != None: + str += "value=%2.3f" % self.value + if self.variance != None: + str += " variance=%2.3f" % self.variance + if self.num_cases != None: + str += " ndata=%d" % self.num_cases return str + + @property + def display_value(self): + if self.value: + return "%2.3f" % self.value + else: + return "x" + + @property + def display_variance(self): + if self.variance: + return "%2.3f" % self.variance + else: + return "x" + + + #try: + # traitVar = thisvar + # dispVar = "%2.3f" % thisvar + #except: + # traitVar = '' + # dispVar = 'x' + + #try: + # traitVal = thisval + # dispVal = "%2.3f" % thisval + #except: + # traitVal = '' + # dispVal = 'x' + - __repr__ = __str__ + #def this_val_full(self): + # strain_name =
\ No newline at end of file diff --git a/wqflask/base/webqtlTrait.py b/wqflask/base/webqtlTrait.py index 23b98238..337493ef 100755 --- a/wqflask/base/webqtlTrait.py +++ b/wqflask/base/webqtlTrait.py @@ -225,7 +225,10 @@ class webqtlTrait: - def retrieveData(self, strainlist=[]): + def retrieveData(self, strainlist=None): + + if strainlist == None: + strainlist = [] assert self.db and self.cursor if self.db.type == 'Temp': @@ -328,32 +331,33 @@ class webqtlTrait: self.cursor.execute(query) results = self.cursor.fetchall() self.data.clear() + if results: self.mysqlid = results[0][-1] - if strainlist: - for item in results: - if item[0] in strainlist: - val = item[1] - if val != None: - var = item[2] - ndata = None - if self.db.type in ('Publish', 'Temp'): - ndata = item[3] - self.data[item[0]] = webqtlCaseData(val, var, ndata) + #if strainlist: + for item in results: + #name, value, variance, num_cases = item + if not strainlist or (strainlist and name in strainlist): + #if value != None: + # num_cases = None + # if self.db.type in ('Publish', 'Temp'): + # ndata = item[3] + name = item[0] + self.data[name] = webqtlCaseData(*item) #name, value, variance, num_cases) #end for - else: - for item in results: - val = item[1] - if val != None: - var = item[2] - ndata = None - if self.db.type in ('Publish', 'Temp'): - ndata = item[3] - self.data[item[0]] = webqtlCaseData(val, var, ndata) - #end for - #end if - else: - pass + # else: + # for item in results: + # val = item[1] + # if val != None: + # var = item[2] + # ndata = None + # if self.db.type in ('Publish', 'Temp'): + # ndata = item[3] + # self.data[item[0]] = webqtlCaseData(val, var, ndata) + # #end for + # #end if + #else: + # pass def keys(self): return self.__dict__.keys() diff --git a/wqflask/utility/webqtlUtil.py b/wqflask/utility/webqtlUtil.py index 6409e781..99451e33 100755 --- a/wqflask/utility/webqtlUtil.py +++ b/wqflask/utility/webqtlUtil.py @@ -252,7 +252,12 @@ def FloatList2String(lst): return "" def ListNotNull(lst): - 'Determine if the elements in a list are all null' + '''Obsolete - Use built in function any (or all or whatever) + + + Determine if the elements in a list are all null + + ''' for item in lst: if item is not None: return 1 diff --git a/wqflask/wqflask/show_trait/DataEditingPage.py b/wqflask/wqflask/show_trait/DataEditingPage.py index f9133f27..43f05f14 100755 --- a/wqflask/wqflask/show_trait/DataEditingPage.py +++ b/wqflask/wqflask/show_trait/DataEditingPage.py @@ -11,6 +11,7 @@ import yaml from htmlgen import HTMLgen2 as HT from base import webqtlConfig +from base import webqtlCaseData from utility import webqtlUtil, Plot from base.webqtlTrait import webqtlTrait from dbFunction import webqtlDatabaseFunction @@ -172,17 +173,17 @@ class DataEditingPage(templatePage): if thisTrait == None: thisTrait = webqtlTrait(data=fd.allTraitData, db=None) - # Variance submit page only - if fd.enablevariance and not varianceDataPage: - pass - #title2Body.append("Click the next button to go to the variance submission form.", - # HT.Center(next,reset)) - else: - pass - # We'll get this part working later - print("Calling dispBasicStatistics") - self.dispBasicStatistics(fd, thisTrait) - #self.dispMappingTools(fd, title4Body, thisTrait) + ## Variance submit page only + #if fd.enablevariance and not varianceDataPage: + # pass + # #title2Body.append("Click the next button to go to the variance submission form.", + # # HT.Center(next,reset)) + #else: + # pass + # # We'll get this part working later + # print("Calling dispBasicStatistics") + # self.dispBasicStatistics(fd, thisTrait) + # #self.dispMappingTools(fd, title4Body, thisTrait) ############################# ## Trait Value Table @@ -892,13 +893,13 @@ class DataEditingPage(templatePage): for strain in thisTrait.data.keys(): strainName = strain.replace("_2nd_", "") if strain not in strainlist: - if (thisTrait.data[strainName].val != None): + if thisTrait.data[strainName].value != None: if strain.find('F1') < 0: specialStrains.append(strain) - if (thisTrait.data[strainName].val != None) and (strain not in (fd.f1list + fd.parlist)): + if (thisTrait.data[strainName].value != None) and (strain not in (fd.f1list + fd.parlist)): other_strains.append(strain) #XZ: at current stage, other_strains doesn't include parent strains and F1 strains of primary group else: - if (thisTrait.data[strainName].val != None) and (strain not in (fd.f1list + fd.parlist)): + if (thisTrait.data[strainName].value != None) and (strain not in (fd.f1list + fd.parlist)): primary_strains.append(strain) #XZ: at current stage, the primary_strains is the same as fd.strainlist / ZS: I tried defining primary_strains as fd.strainlist instead, but in some cases it ended up including the parent strains (1436869_at BXD) if len(other_strains) > 3: @@ -941,41 +942,58 @@ class DataEditingPage(templatePage): vals3 = [] #Using all strains/cases for values - for i, strainNameOrig in enumerate(all_strains): + #for strain_type in (all_strains, primary_strains, other_strains): + for strainNameOrig in all_strains: strainName = strainNameOrig.replace("_2nd_", "") - try: - thisval = thisTrait.data[strainName].val - thisvar = thisTrait.data[strainName].var - thisValFull = [strainName, thisval, thisvar] - except: - continue + #try: + print("* type of thisTrait:", type(thisTrait)) + print(" name:", thisTrait.__class__.__name__) + print(" thisTrait:", thisTrait) + print(" type of thisTrait.data[strainName]:", type(thisTrait.data[strainName])) + print(" name:", thisTrait.data[strainName].__class__.__name__) + print(" thisTrait.data[strainName]:", thisTrait.data[strainName]) + thisval = thisTrait.data[strainName].value + print(" thisval:", thisval) + thisvar = thisTrait.data[strainName].variance + print(" thisvar:", thisvar) + thisValFull = [strainName, thisval, thisvar] + print(" thisValFull:", thisValFull) + #except: + # continue vals1.append(thisValFull) + + + #vals1 = [[strainNameOrig.replace("_2nd_", ""), + # thisTrait.data[strainName].val, + # thisTrait.data[strainName].var] + # for strainNameOrig in all_strains]] + # #Using just the RISet strain - for i, strainNameOrig in enumerate(primary_strains): + for strainNameOrig in primary_strains: strainName = strainNameOrig.replace("_2nd_", "") - try: - thisval = thisTrait.data[strainName].val - thisvar = thisTrait.data[strainName].var - thisValFull = [strainName,thisval,thisvar] - except: - continue + #try: + thisval = thisTrait.data[strainName].value + thisvar = thisTrait.data[strainName].variance + thisValFull = [strainName,thisval,thisvar] + #except: + # continue vals2.append(thisValFull) #Using all non-RISet strains only - for i, strainNameOrig in enumerate(other_strains): + for strainNameOrig in other_strains: strainName = strainNameOrig.replace("_2nd_", "") - try: - thisval = thisTrait.data[strainName].val - thisvar = thisTrait.data[strainName].var - thisValFull = [strainName,thisval,thisvar] - except: - continue + #try: + thisval = thisTrait.data[strainName].value + thisvar = thisTrait.data[strainName].variance + thisValFull = [strainName,thisval,thisvar] + #except: + # continue vals3.append(thisValFull) @@ -985,15 +1003,15 @@ class DataEditingPage(templatePage): vals = [] #Using all strains/cases for values - for i, strainNameOrig in enumerate(all_strains): + for strainNameOrig in all_strains: strainName = strainNameOrig.replace("_2nd_", "") - try: - thisval = thisTrait.data[strainName].val - thisvar = thisTrait.data[strainName].var - thisValFull = [strainName,thisval,thisvar] - except: - continue + #try: + thisval = thisTrait.data[strainName].value + thisvar = thisTrait.data[strainName].variance + thisValFull = [strainName,thisval,thisvar] + #except: + # continue vals.append(thisValFull) @@ -1344,24 +1362,26 @@ class DataEditingPage(templatePage): # updated by NL 5-28-2010 # Interval Mapping chrMenu = HT.Select(name='chromosomes1') - chrMenu.append(tuple(["All",-1])) + chrMenu.append(("All",-1)) for i in range(len(fd.genotype)): - if len(fd.genotype[i]) > 1: - chrMenu.append(tuple([fd.genotype[i].name,i])) + if len(fd.genotype[i]) > 1: + chrMenu.append((fd.genotype[i].name, i)) #Menu for Composite Interval Mapping chrMenu2 = HT.Select(name='chromosomes2') - chrMenu2.append(tuple(["All",-1])) + chrMenu2.append(("All",-1)) for i in range(len(fd.genotype)): - if len(fd.genotype[i]) > 1: - chrMenu2.append(tuple([fd.genotype[i].name,i])) + if len(fd.genotype[i]) > 1: + chrMenu2.append((fd.genotype[i].name, i)) if fd.genotype.Mbmap: scaleText = HT.Span("Mapping Scale:", Class="ffl fwb fs12") - scaleMenu1 = HT.Select(name='scale1', onChange="checkUncheck(window.document.dataInput.scale1.value, window.document.dataInput.permCheck1, window.document.dataInput.bootCheck1)") + scaleMenu1 = HT.Select(name='scale1', + onChange="checkUncheck(window.document.dataInput.scale1.value, window.document.dataInput.permCheck1, window.document.dataInput.bootCheck1)") scaleMenu1.append(("Megabase",'physic')) scaleMenu1.append(("Centimorgan",'morgan')) - scaleMenu2 = HT.Select(name='scale2', onChange="checkUncheck(window.document.dataInput.scale2.value, window.document.dataInput.permCheck2, window.document.dataInput.bootCheck2)") + scaleMenu2 = HT.Select(name='scale2', + onChange="checkUncheck(window.document.dataInput.scale2.value, window.document.dataInput.permCheck2, window.document.dataInput.bootCheck2)") scaleMenu2.append(("Megabase",'physic')) scaleMenu2.append(("Centimorgan",'morgan')) @@ -1521,7 +1541,7 @@ class DataEditingPage(templatePage): submitTable = HT.TableLite(cellspacing=0, cellpadding=0, width="100%", Class="target2") - if mappingMethodId != None: + if not mappingMethodId: if int(mappingMethodId) == 1: submitTable.append(mapping_row) submitTable.append(mapping_script) @@ -1567,17 +1587,6 @@ class DataEditingPage(templatePage): title4Body.append(submitTable) - def natural_sort(strain_list): - - sorted = [] - for strain in strain_list: - try: - strain = int(strain) - try: sorted[-1] = sorted[-1] * 10 + strain - except: sorted.append(strain) - except: - sorted.append(strain) - return sorted ########################################## ## Function to display trait tables @@ -1727,8 +1736,9 @@ class DataEditingPage(templatePage): attribute_names=attribute_names, strains='other') - if other_strains or (fd.f1list and thisTrait.data.has_key(fd.f1list[0])) \ - or (fd.f1list and thisTrait.data.has_key(fd.f1list[1])): + #TODO: Figure out why this if statement is written this way - Zach + if (other_strains or (fd.f1list and thisTrait.data.has_key(fd.f1list[0])) + or (fd.f1list and thisTrait.data.has_key(fd.f1list[1]))): print("hjs") fd.allstrainlist = allstrainlist_neworder @@ -1738,85 +1748,93 @@ class DataEditingPage(templatePage): def addTrait2Table(self, fd, varianceDataPage, strainlist, mainForm, thisTrait, - other_strainsExist=None, attribute_ids=[], - attribute_names=[], strains='primary'): + other_strainsExist=None, attribute_ids=None, + attribute_names=None, strains='primary'): + + if attribute_ids == None: + attribute_ids = [] + + if attribute_names == None: + attribute_names = [] + #XZ, Aug 23, 2010: I commented the code related to the display of animal case #strainInfo = thisTrait.has_key('strainInfo') and thisTrait.strainInfo print("in addTrait2Table") table_body = [] vals = [] - for i, strainNameOrig in enumerate(strainlist): - strainName = strainNameOrig.replace("_2nd_", "") - - try: - thisval = thisTrait.data[strainName].val - thisvar = thisTrait.data[strainName].var - thisValFull = [strainName,thisval,thisvar] - except: - continue - - vals.append(thisValFull) - upperBound, lowerBound = Plot.findOutliers(vals) # ZS: Values greater than upperBound or less than lowerBound are considered outliers. + #################### Only used to find upperBound and lowerBound + #for strainNameOrig in strainlist: + # strainName = strainNameOrig.replace("_2nd_", "") + # print("pen: %s - %s" % (strainNameOrig, strainName)) + # thisval = thisTrait.data[strainName].value + # thisvar = thisTrait.data[strainName].variance + # thisValFull = [strainName, thisval, thisvar] + # + # vals.append(thisValFull) + # + #upperBound, lowerBound = Plot.findOutliers(vals) # ZS: Values greater than upperBound or less than lowerBound are considered outliers. the_strains = [] - for i, strainNameOrig in enumerate(strainlist): - strain = {} - print("zyt - strainNameOrig:", strainNameOrig) - trId = strainNameOrig - #selectCheck = HT.Input(type="checkbox", name="selectCheck", value=trId, Class="checkbox", onClick="highlight(this)") - + for counter, strainNameOrig in enumerate(strainlist, 1): strainName = strainNameOrig.replace("_2nd_", "") strainNameAdd = '' if fd.RISet == 'AXBXA' and strainName in ('AXB18/19/20','AXB13/14','BXA8/17'): strainNameAdd = HT.Href(url='/mouseCross.html#AXB/BXA', text=HT.Sup('#'), Class='fs12', target="_blank") - + try: - thisval, thisvar, thisNP = thisTrait.data[strainName].val, thisTrait.data[strainName].var, thisTrait.data[strainName].N - if thisNP: - mainForm.append(HT.Input(name='N'+strainName, value=thisNP, type='hidden')) - else: - pass - except: - thisval = thisvar = 'x' - - try: - traitVal = thisval - dispVal = "%2.3f" % thisval - except: - traitVal = '' - dispVal = 'x' + strain = thisTrait.data[strainName] + except KeyError: + print("No strain %s, let's create it now" % strainName) + strain = webqtlCaseData.webqtlCaseData(strainName) + print("zyt - strainNameOrig:", strainNameOrig) + #trId = strainNameOrig + #selectCheck = HT.Input(type="checkbox", name="selectCheck", value=trId, Class="checkbox", onClick="highlight(this)") - strain['strain_name'] = strainName - strainNameDisp = HT.Span(strainName, Class='fs14 fwn ffl') + + #try: + # thisval, thisvar, thisNP = thisTrait.data[strainName].value, thisTrait.data[strainName].var, thisTrait.data[strainName].N + # if thisNP: + # mainForm.append(HT.Input(name='N'+strainName, value=thisNP, type='hidden')) + # else: + # pass + #except: + # thisval = thisvar = 'x' - if varianceDataPage: - try: - traitVar = thisvar - dispVar = "%2.3f" % thisvar - except: - traitVar = '' - dispVar = 'x' + #thisval = thisTrait.data[strainName].value + #thisvar = thisTrait.data[strainName].variance + #thisTrait.data[strainName].num_cases - if thisval == 'x': - traitVar = '' #ZS: Used to be 0, but it doesn't seem like a good idea for values of 0 to *always* be at the bottom when you sort; it makes more sense to put "nothing" + #strain['strain_name'] = strainName + #strainNameDisp = HT.Span(strainName, Class='fs14 fwn ffl') - #className = 'fs13 b1 c222 ' - #valueClassName = 'fs13 b1 c222 valueField ' - #rowClassName = 'novalue ' - else: - if (thisval >= upperBound) or (thisval <= lowerBound): - strain['outlier'] = "outlier" # We're going to use this as a class, so we want it to be a word - #className = 'fs13 b1 c222 outlier ' - #valueClassName = 'fs13 b1 c222 valueField ' - #rowClassName = 'outlier' - else: - strain['outlier'] = "not_outlier" - #className = 'fs13 b1 c222 ' - #valueClassName = 'fs13 b1 c222 valueField ' - #rowClassName = ' ' + #if varianceDataPage: + #try: + # traitVar = thisvar + # dispVar = "%2.3f" % thisvar + #except: + # traitVar = '' + # dispVar = 'x' + + #if thisval == 'x': + # traitVar = '' #ZS: Used to be 0, but it doesn't seem like a good idea for values of 0 to *always* be at the bottom when you sort; it makes more sense to put "nothing" + # + # #className = 'fs13 b1 c222 ' + # #valueClassName = 'fs13 b1 c222 valueField ' + # #rowClassName = 'novalue ' + #else: + # if (thisval >= upperBound) or (thisval <= lowerBound): + # strain['outlier'] = "outlier" # We're going to use this as a class, so we want it to be a word + # #className = 'fs13 b1 c222 outlier ' + # #valueClassName = 'fs13 b1 c222 valueField ' + # #rowClassName = 'outlier' + # else: + # strain['outlier'] = "not_outlier" + # #className = 'fs13 b1 c222 ' + # #valueClassName = 'fs13 b1 c222 valueField ' + # #rowClassName = ' ' # #if varianceDataPage: # varClassName = valueClassName + str(traitVar) @@ -1851,15 +1869,15 @@ class DataEditingPage(templatePage): # # onChange= "javascript:this.form['V%s'].value=this.form['V%s'].value;" % (strainNameOrig.replace("/", ""), strainNameOrig.replace("/", "")), Class=varClassName) if strains == 'primary': - strain['the_id'] = "Primary_" + str(i+1) + strain.this_id = "Primary_" + str(counter) #table_row = HT.TR(Id="Primary_"+str(i+1), Class=rowClassName) else: - strain['the_id'] = "Other_" + str(i+1) + strain.this_id = "Other_" + str(counter) #table_row = HT.TR(Id="Other_"+str(i+1), Class=rowClassName) - strain['value'] = traitVal - - strain['se'] = dispVar + #strain['value'] = traitVal + # + #strain['se'] = dispVar #if varianceDataPage: #table_row.append(HT.TD(str(i+1), selectCheck, width=45, align='right', Class=className)) #table_row.append(HT.TD(strainNameDisp, strainNameAdd, align='right', width=100, Class=className)) diff --git a/wqflask/wqflask/show_trait/show_trait_page.py b/wqflask/wqflask/show_trait/show_trait_page.py index b1f71e55..b42f5e8e 100644 --- a/wqflask/wqflask/show_trait/show_trait_page.py +++ b/wqflask/wqflask/show_trait/show_trait_page.py @@ -161,24 +161,25 @@ class ShowTraitPage(DataEditingPage): thisTrait.returnURL = '%s&CellID=%s' % (thisTrait.returnURL, CellID) #retrieve trait information - try: - thisTrait.retrieveInfo() - thisTrait.retrieveData() - self.updMysql() - self.cursor.execute("insert into AccessLog(accesstime,ip_address) values(Now(),%s)", user_ip) - self.openMysql() - except Exception as why: - print("Got an exception:", why) - heading = "Retrieve Data" - detail = ["The information you requested is not avaiable at this time."] - self.error(heading=heading, detail=detail) - return + #try: + thisTrait.retrieveInfo() + thisTrait.retrieveData() + self.updMysql() + self.cursor.execute("insert into AccessLog(accesstime,ip_address) values(Now(),%s)", user_ip) + self.openMysql() + #except Exception as why: + # print("Got an exception:", why) + # heading = "Retrieve Data" + # detail = ["The information you requested is not avaiable at this time."] + # self.error(heading=heading, detail=detail) + # return ##read genotype file fd.RISet = thisTrait.riset fd.readGenotype() - if webqtlUtil.ListNotNull(map(lambda x:x.var, thisTrait.data.values())): + #if webqtlUtil.ListNotNull(map(lambda x:x.var, thisTrait.data.values())): + if any([x.variance for x in thisTrait.data.values()]): fd.displayVariance = 1 fd.varianceDispName = 'SE' fd.formID = 'varianceChoice' diff --git a/wqflask/wqflask/templates/trait_data_and_analysis.html b/wqflask/wqflask/templates/trait_data_and_analysis.html index 4bf06d45..94ba0aad 100644 --- a/wqflask/wqflask/templates/trait_data_and_analysis.html +++ b/wqflask/wqflask/templates/trait_data_and_analysis.html @@ -8,7 +8,7 @@ <table width="100%" cellspacing="0" cellpadding="5"> <tr> <td valign="top" width="100%" bgcolor="#FAFAFA"> - <form method="post" action="/webqtl/main.py" name="dataInput"> + <form method="post" action="/webqtl/main.py" name="dataInput"></form> {# <input type="hidden" name="isSE" value="yes"> <input type="hidden" name="permCheck"> <input type="hidden" name="otherStrainVals" value="_"> @@ -3059,7 +3059,7 @@ </div><br> {% for strain_type in (primary_strains, other_strains) %} - <div id="{{ strain_type[0]['the_id'].lower().partition('_')[0] }}"> {# Slightly tortuous, but best way to get the id we need #} + <div id="{{ strain_type[0]['this_id'].lower().partition('_')[0] }}"> {# Slightly tortuous, but best way to get the id we need #} <table class="not_tablesorter" {# Todo: Turn tablesorter back on #} id="{{ 'sortable%i' % (loop.index) }}" cellpadding="0" cellspacing="0"> @@ -3076,20 +3076,20 @@ </tr> {% for strain in strain_type %} - <tr class="{{ strain.outlier }} value_se" id="{{ strain.the_id }}"> + <tr class="{{ strain.outlier }} value_se" id="{{ strain.this_id }}"> <td class="fs13 b1 c222" align="right" width="45"> {{ loop.index }} - <input type="checkbox" name="selectCheck" class="checkbox edit_strain_checkbox" value="{{ strain.strain_name }}" checked="checked"> + <input type="checkbox" name="selectCheck" class="checkbox edit_strain_checkbox" value="{{ strain.name }}" checked="checked"> </td> <td class="fs13 b1 c222" align="right" width="100"> - <span class="fs14 fwn ffl edit_strain_strain_name">{{ strain.strain_name }}</span> + <span class="fs14 fwn ffl edit_strain_strain_name">{{ strain.name }}</span> </td> {# Todo: Add IDs #} <td class="fs13 b1 c222" align="right" width="70"> - <input type="text" name="{{ strain.strain_name }}" class="fs13 b1 c222 edit_strain_value valueField" - value="{{ strain.value }}" size="8" maxlength="8" + <input type="text" name="{{ strain.name }}" class="fs13 b1 c222 edit_strain_value valueField" + value="{{ strain.display_value }}" size="8" maxlength="8" style="text-align:right; background-color:#FFFFFF;"> </td> @@ -3099,8 +3099,8 @@ {# Todo: Add IDs #} <td class="fs13 b1 c222" align="right" width="80"> - <input type="text" name=""{{ 'V' + strain.strain_name}}" class="fs13 b1 c222 valueField edit_strain_se" - value="{{ strain.se }}" + <input type="text" name=""{{ 'V' + strain.name}}" class="fs13 b1 c222 valueField edit_strain_se" + value="{{ strain.display_variance }}" size="8" maxlength="8" style="text-align:right"></td> </tr> {% endfor %} @@ -3133,4 +3133,8 @@ <!-- End of body --> - {% endblock %} + + + + + {% endblock %} |