diff options
| -rw-r--r-- | wqflask/wqflask/marker_regression/gemma_mapping.py | 2 |
1 files changed, 1 insertions, 1 deletions
diff --git a/wqflask/wqflask/marker_regression/gemma_mapping.py b/wqflask/wqflask/marker_regression/gemma_mapping.py index 623ab87f..ec12f9b7 100644 --- a/wqflask/wqflask/marker_regression/gemma_mapping.py +++ b/wqflask/wqflask/marker_regression/gemma_mapping.py @@ -220,7 +220,7 @@ def parse_loco_output(this_dataset, gwa_output_filename, loco="True"): marker['chr'] = line.split("\t")[0] marker['Mb'] = float(line.split("\t")[2]) / 1000000 marker['p_value'] = float(line.split("\t")[10]) - marker['additive'] = float(line.split("\t")[7]) + marker['additive'] = -(float(line.split("\t")[7])) if math.isnan(marker['p_value']) or (marker['p_value'] <= 0): marker['lod_score'] = 0 else: |