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-rw-r--r--wqflask/tests/base/test_data_set.py71
-rw-r--r--wqflask/tests/base/test_general_object.py9
-rw-r--r--wqflask/tests/wqflask/api/test_gen_menu.py6
3 files changed, 66 insertions, 20 deletions
diff --git a/wqflask/tests/base/test_data_set.py b/wqflask/tests/base/test_data_set.py
index 94780a5d..e6000e56 100644
--- a/wqflask/tests/base/test_data_set.py
+++ b/wqflask/tests/base/test_data_set.py
@@ -4,7 +4,7 @@ import unittest
import mock
from wqflask import app
-from data import gen_menu_json
+from .data import gen_menu_json
from base.data_set import DatasetType
@@ -59,9 +59,14 @@ class TestDataSetTypes(unittest.TestCase):
self.assertEqual(data_set("BXDGeno"), "Geno")
self.assertEqual(data_set("BXDPublish"), "Publish")
self.assertEqual(data_set("HLC_0311"), "ProbeSet")
+
redis_mock.set.assert_called_once_with(
"dataset_structure",
- '{"BXDGeno": "Geno", "BXDPublish": "Publish", "HLCPublish": "Publish", "HLC_0311": "ProbeSet", "HC_M2_0606_P": "ProbeSet"}')
+ ('{"HLC_0311": "ProbeSet", '
+ '"HLCPublish": "Publish", '
+ '"BXDGeno": "Geno", '
+ '"HC_M2_0606_P": "ProbeSet", '
+ '"BXDPublish": "Publish"}'))
@mock.patch('base.data_set.g')
def test_set_dataset_key_mrna(self, db_mock):
@@ -74,8 +79,17 @@ class TestDataSetTypes(unittest.TestCase):
self.assertEqual(data_set("Test"), "ProbeSet")
redis_mock.set.assert_called_once_with(
"dataset_structure",
- '{"Aging-Brain-UCIPublish": "Publish", "AKXDGeno": "Geno", "B139_K_1206_M": "ProbeSet", "AD-cases-controls-MyersGeno": "Geno", "AD-cases-controls-MyersPublish": "Publish", "All Phenotypes": "Publish", "Test": "ProbeSet", "AXBXAPublish": "Publish", "B139_K_1206_R": "ProbeSet", "AXBXAGeno": "Geno"}')
- expected_db_call = """"""
+ ('{"AD-cases-controls-MyersGeno": "Geno", '
+ '"AD-cases-controls-MyersPublish": "Publish", '
+ '"AKXDGeno": "Geno", '
+ '"AXBXAGeno": "Geno", '
+ '"AXBXAPublish": "Publish", '
+ '"Aging-Brain-UCIPublish": "Publish", '
+ '"All Phenotypes": "Publish", '
+ '"B139_K_1206_M": "ProbeSet", '
+ '"B139_K_1206_R": "ProbeSet", '
+ '"Test": "ProbeSet"}'))
+
db_mock.db.execute.assert_called_with(
("SELECT ProbeSetFreeze.Id FROM ProbeSetFreeze " +
"WHERE ProbeSetFreeze.Name = \"Test\" ")
@@ -92,13 +106,21 @@ class TestDataSetTypes(unittest.TestCase):
self.assertEqual(data_set("Test"), "Publish")
redis_mock.set.assert_called_once_with(
"dataset_structure",
- '{"Aging-Brain-UCIPublish": "Publish", "AKXDGeno": "Geno", "B139_K_1206_M": "ProbeSet", "AD-cases-controls-MyersGeno": "Geno", "AD-cases-controls-MyersPublish": "Publish", "All Phenotypes": "Publish", "Test": "Publish", "AXBXAPublish": "Publish", "B139_K_1206_R": "ProbeSet", "AXBXAGeno": "Geno"}')
- expected_db_call = """"""
+ ('{"AD-cases-controls-MyersGeno": "Geno", '
+ '"AD-cases-controls-MyersPublish": "Publish", '
+ '"AKXDGeno": "Geno", '
+ '"AXBXAGeno": "Geno", '
+ '"AXBXAPublish": "Publish", '
+ '"Aging-Brain-UCIPublish": "Publish", '
+ '"All Phenotypes": "Publish", '
+ '"B139_K_1206_M": "ProbeSet", '
+ '"B139_K_1206_R": "ProbeSet", '
+ '"Test": "Publish"}'))
db_mock.db.execute.assert_called_with(
- ("SELECT InfoFiles.GN_AccesionId " +
- "FROM InfoFiles, PublishFreeze, InbredSet " +
+ ("SELECT InfoFiles.GN_AccesionId "
+ "FROM InfoFiles, PublishFreeze, InbredSet "
"WHERE InbredSet.Name = 'Test' AND "
- "PublishFreeze.InbredSetId = InbredSet.Id AND " +
+ "PublishFreeze.InbredSetId = InbredSet.Id AND "
"InfoFiles.InfoPageName = PublishFreeze.Name")
)
@@ -111,10 +133,20 @@ class TestDataSetTypes(unittest.TestCase):
data_set = DatasetType(redis_mock)
data_set.set_dataset_key("other_pheno", "Test")
self.assertEqual(data_set("Test"), "Publish")
+
redis_mock.set.assert_called_once_with(
"dataset_structure",
- '{"Aging-Brain-UCIPublish": "Publish", "AKXDGeno": "Geno", "B139_K_1206_M": "ProbeSet", "AD-cases-controls-MyersGeno": "Geno", "AD-cases-controls-MyersPublish": "Publish", "All Phenotypes": "Publish", "Test": "Publish", "AXBXAPublish": "Publish", "B139_K_1206_R": "ProbeSet", "AXBXAGeno": "Geno"}')
- expected_db_call = """"""
+ ('{"AD-cases-controls-MyersGeno": "Geno", '
+ '"AD-cases-controls-MyersPublish": "Publish", '
+ '"AKXDGeno": "Geno", '
+ '"AXBXAGeno": "Geno", '
+ '"AXBXAPublish": "Publish", '
+ '"Aging-Brain-UCIPublish": "Publish", '
+ '"All Phenotypes": "Publish", '
+ '"B139_K_1206_M": "ProbeSet", '
+ '"B139_K_1206_R": "ProbeSet", '
+ '"Test": "Publish"}'))
+
db_mock.db.execute.assert_called_with(
("SELECT PublishFreeze.Name " +
"FROM PublishFreeze, InbredSet " +
@@ -133,8 +165,17 @@ class TestDataSetTypes(unittest.TestCase):
self.assertEqual(data_set("Test"), "Geno")
redis_mock.set.assert_called_once_with(
"dataset_structure",
- '{"Aging-Brain-UCIPublish": "Publish", "AKXDGeno": "Geno", "B139_K_1206_M": "ProbeSet", "AD-cases-controls-MyersGeno": "Geno", "AD-cases-controls-MyersPublish": "Publish", "All Phenotypes": "Publish", "Test": "Geno", "AXBXAPublish": "Publish", "B139_K_1206_R": "ProbeSet", "AXBXAGeno": "Geno"}')
- expected_db_call = """"""
+ ('{"AD-cases-controls-MyersGeno": "Geno", '
+ '"AD-cases-controls-MyersPublish": "Publish", '
+ '"AKXDGeno": "Geno", '
+ '"AXBXAGeno": "Geno", '
+ '"AXBXAPublish": "Publish", '
+ '"Aging-Brain-UCIPublish": "Publish", '
+ '"All Phenotypes": "Publish", '
+ '"B139_K_1206_M": "ProbeSet", '
+ '"B139_K_1206_R": "ProbeSet", '
+ '"Test": "Geno"}'))
+
db_mock.db.execute.assert_called_with(
- ("SELECT GenoFreeze.Id FROM GenoFreeze WHERE GenoFreeze.Name = \"Test\" ")
- )
+ ("SELECT GenoFreeze.Id FROM "
+ "GenoFreeze WHERE GenoFreeze.Name = \"Test\" "))
diff --git a/wqflask/tests/base/test_general_object.py b/wqflask/tests/base/test_general_object.py
index c7701021..00fd3c72 100644
--- a/wqflask/tests/base/test_general_object.py
+++ b/wqflask/tests/base/test_general_object.py
@@ -17,9 +17,9 @@ class TestGeneralObjectTests(unittest.TestCase):
def test_object_dict(self):
"""Test whether the base class is printed properly"""
test_obj = GeneralObject("a", name="test", value=1)
- self.assertEqual(str(test_obj), "value = 1\nname = test\n")
+ self.assertEqual(str(test_obj), "name = test\nvalue = 1\n")
self.assertEqual(
- repr(test_obj), "value = 1\nname = test\ncontents = ['a']\n")
+ repr(test_obj), "contents = ['a']\nname = test\nvalue = 1\n")
self.assertEqual(len(test_obj), 2)
self.assertEqual(test_obj["value"], 1)
test_obj["test"] = 1
@@ -36,6 +36,5 @@ class TestGeneralObjectTests(unittest.TestCase):
test_obj1 = GeneralObject("a", name="test", value=1)
test_obj2 = GeneralObject("b", name="test2", value=2)
test_obj3 = GeneralObject("a", name="test", x=1, y=2)
- self.assertTrue(test_obj1 == test_obj2 )
- self.assertFalse(test_obj1 == test_obj3 )
-
+ self.assertTrue(test_obj1 == test_obj2)
+ self.assertFalse(test_obj1 == test_obj3)
diff --git a/wqflask/tests/wqflask/api/test_gen_menu.py b/wqflask/tests/wqflask/api/test_gen_menu.py
index 239484aa..bf41054d 100644
--- a/wqflask/tests/wqflask/api/test_gen_menu.py
+++ b/wqflask/tests/wqflask/api/test_gen_menu.py
@@ -2,6 +2,7 @@
import unittest
import mock
+from wqflask import app
from wqflask.api.gen_menu import gen_dropdown_json
from wqflask.api.gen_menu import get_species
from wqflask.api.gen_menu import get_groups
@@ -17,6 +18,8 @@ class TestGenMenu(unittest.TestCase):
"""Tests for the gen_menu module"""
def setUp(self):
+ self.app_context = app.app_context()
+ self.app_context.push()
self.test_group = {
'mouse': [
['H_T1',
@@ -67,6 +70,9 @@ class TestGenMenu(unittest.TestCase):
}
}
+ def tearDown(self):
+ self.app_context.pop()
+
@mock.patch('wqflask.api.gen_menu.g')
def test_get_species(self, db_mock):
"""Test that assertion is raised when dataset and dataset_name
generated by cgit v1.2.3 (git 2.44.0) at 2024-11-23 12:29:57 +0000