diff options
| -rw-r--r-- | wqflask/maintenance/dataset/datasampledir/load_genotypes/config.ini | 2 | ||||
| -rw-r--r-- | wqflask/maintenance/dataset/load_genotypes.py | 9 |
2 files changed, 9 insertions, 2 deletions
diff --git a/wqflask/maintenance/dataset/datasampledir/load_genotypes/config.ini b/wqflask/maintenance/dataset/datasampledir/load_genotypes/config.ini index 6f2adbd2..7b2fba9d 100644 --- a/wqflask/maintenance/dataset/datasampledir/load_genotypes/config.ini +++ b/wqflask/maintenance/dataset/datasampledir/load_genotypes/config.ini @@ -1,5 +1,5 @@ [config] -speciesid = 1 +inbredsetid = 1 genofile = datasampledir/load_genotypes/sample.geno U = x H = 0 diff --git a/wqflask/maintenance/dataset/load_genotypes.py b/wqflask/maintenance/dataset/load_genotypes.py index bca99b95..124d3776 100644 --- a/wqflask/maintenance/dataset/load_genotypes.py +++ b/wqflask/maintenance/dataset/load_genotypes.py @@ -11,7 +11,14 @@ def main(argv): for item in config.items('config'): print "\t%s" % (str(item)) # variables - speciesid = config.get('config', 'speciesid') + inbredsetid = config.get('config', 'inbredsetid') + print "inbredsetid: %s" % inbredsetid + species = datastructure.get_species(inbredsetid) + speciesid = species[0] + print "speciesid: %s" % speciesid + genofreeze = datastructure.get_genofreeze_byinbredsetid(inbredsetid) + genofreezeid = genofreeze[0] + print "genofreezeid: %s" % genofreezeid genofile = open(config.get('config', 'genofile'), 'r') metadic = {} # parse genofile |