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-rw-r--r--webtests/browser_run.py72
-rw-r--r--webtests/chromedriverbin17741222 -> 0 bytes
-rw-r--r--webtests/correlation_matrix_test.py70
-rw-r--r--webtests/correlation_test.py49
-rw-r--r--webtests/libpeerconnection.log0
-rw-r--r--webtests/marker_regression_test.py53
-rw-r--r--webtests/show_trait_js_test.py40
-rw-r--r--webtests/test_runner.py26
8 files changed, 0 insertions, 310 deletions
diff --git a/webtests/browser_run.py b/webtests/browser_run.py
deleted file mode 100644
index 6cf46de5..00000000
--- a/webtests/browser_run.py
+++ /dev/null
@@ -1,72 +0,0 @@
-__all__ = ('sleep', 'testmod', 'test')
-
-from doctest import testmod
-
-from time import sleep
-
-import selenium
-from selenium import webdriver
-from selenium.common.exceptions import NoSuchElementException, ElementNotVisibleException
-from selenium.webdriver.common.keys import Keys
-
-class Test:
- def __init__(self):
- #self.browser = webdriver.Chrome('/home/gn2/gn2/webtests/chromedriver')
- self.browser = webdriver.Firefox()
-
- def get(self, url):
- self.browser.get(url)
- sleep(5)
- self.title()
-
- def click(self, xpath_selector):
- el = self.browser.find_element_by_xpath(xpath_selector)
- if el.text:
- text = el.text.strip()
- elif el.get_attribute("value"):
- text = el.get_attribute("value").strip()
- else:
- text = "Notext"
- el.click()
- print("clicked:", text)
- sleep(2)
-
- def click_option(self, xpath_selector, option_text):
- el = self.browser.find_element_by_xpath(xpath_selector)
- for option in el.find_elements_by_tag_name('option'):
- if option.text == option_text:
- option.click() # select() in earlier versions of webdriver
- break
- sleep(2)
-
- def enter_text(self, xpath_selector, text):
- el = self.browser.find_element_by_xpath(xpath_selector)
- sleep(10)
- el.send_keys(text)
- sleep(5)
- # Just in case things get mangled by JavaScript, etc. we print the text for testing
- self.get_text(xpath_selector)
-
- def get_text(self, xpath_selector):
- el = self.browser.find_element_by_xpath(xpath_selector)
- text = el.text.strip() or el.get_attribute("value").strip()
- print("text:", text)
-
- def get_element_style(self, xpath_selector):
- el = self.browser.find_element_by_xpath(xpath_selector)
- style = el.get_attribute("style").strip()
- print("style:", style)
-
- def switch_window(self):
- self.browser.switch_to_window(self.browser.window_handles[-1])
- sleep(2)
- self.title()
- sleep(2)
-
-
- def title(self):
- print("title:", self.browser.title)
-
-
-
-test = Test()
diff --git a/webtests/chromedriver b/webtests/chromedriver
deleted file mode 100644
index 754eb668..00000000
--- a/webtests/chromedriver
+++ /dev/null
Binary files differ
diff --git a/webtests/correlation_matrix_test.py b/webtests/correlation_matrix_test.py
deleted file mode 100644
index 97114890..00000000
--- a/webtests/correlation_matrix_test.py
+++ /dev/null
@@ -1,70 +0,0 @@
-"""
-
-Test Correlation matrix
-
->>> test.get("http://genenetwork.org/")
-title: GeneNetwork
-
-Choose the type
->>> test.click_option('''//*[@id="tissue"]''', 'Hippocampus mRNA')
-
-Enter the Get Any
->>> test.enter_text('''//*[@id="tfor"]''', 'grin2b')
-text: grin2b
-
-Search
->>> test.click('//*[@id="btsearch"]')
-clicked: Search
-
-Add 1430675_at
->>> test.click('''/html/body/table/tbody/tr[3]/td/table/tbody/tr/td/form/p/table/tbody/tr[3]/td/div/table/tbody/tr[2]/td/input''')
-clicked: HC_M2_0606_P::1430675_at
-
-Add 1442370_at
->>> test.click('''/html/body/table/tbody/tr[3]/td/table/tbody/tr/td/form/p/table/tbody/tr[3]/td/div/table/tbody/tr[3]/td/input''')
-clicked: HC_M2_0606_P::1442370_at
-
-Add 1457003_at
->>> test.click('''/html/body/table/tbody/tr[3]/td/table/tbody/tr/td/form/p/table/tbody/tr[3]/td/div/table/tbody/tr[4]/td/input''')
-clicked: HC_M2_0606_P::1457003_at
-
-Add 1422223_at
->>> test.click('''/html/body/table/tbody/tr[3]/td/table/tbody/tr/td/form/p/table/tbody/tr[3]/td/div/table/tbody/tr[5]/td/input''')
-clicked: HC_M2_0606_P::1422223_at
-
->>> sleep(5)
-
-Add to collection page
->>> test.click('''/html/body/table/tbody/tr[3]/td/table/tbody/tr/td/form/p/table/tbody/tr[1]/td/table/tbody/tr[1]/td[4]/a''')
-clicked: Notext
-
->>> sleep(5)
-
-A new window is created, so we switch to it
->>> test.switch_window()
-title: BXD Trait Collection
-
-Select all records
->>> test.click('''/html/body/table/tbody/tr[3]/td/table/tbody/tr/td/form/table/tbody/tr/td/table/tbody/tr/td/table/tbody/tr/td/a/img''')
-clicked: Notext
-
-Click Matrix
->>> test.click('''/html/body/table/tbody/tr[3]/td/table/tbody/tr/td/form/table/tbody/tr/td/table/tbody/tr[2]/td/table/tbody/tr/td[2]/a/img''')
-clicked: Notext
-
-Another new window
->>> test.switch_window()
-title: Correlation Matrix
-
-Sleep a bunch because this can take a while
->>> sleep(10)
-
-Ensure that the correlation between Trait3 (HC_M2_0606_P::1457003_at) and Trait4 (HC_M2_0606_P::1422223_at) is 0.608
->>> test.get_text('''/html/body/table/tbody/tr[3]/td/table/tbody/tr/td/form/blockquote/table/tbody/tr[5]/td[5]/a/font''')
-text: 0.608\n71
-
-"""
-
-from browser_run import *
-
-testmod()
diff --git a/webtests/correlation_test.py b/webtests/correlation_test.py
deleted file mode 100644
index 311bb847..00000000
--- a/webtests/correlation_test.py
+++ /dev/null
@@ -1,49 +0,0 @@
-"""
-Test calculate correlations
-
->>> test.get("http://genenetwork.org")
-title: GeneNetwork
-
-Choose the type
->>> test.click_option('''//*[@id="tissue"]''', 'Hippocampus mRNA')
-
-Enter the Get Any
->>> test.enter_text('''//*[@id="tfor"]''', 'ssh')
-text: ssh
-
-Search
->>> test.click('//*[@id="btsearch"]')
-clicked: Search
-
-Choose the first result
->>> test.click('''/html/body/table/tbody/tr[3]/td/table/tbody/tr/td/form/p/table/tbody/tr[3]/td/div/table/tbody/tr[2]/td[2]/a''')
-clicked: 1455854_a_at
-
-A new window is created, so we switch to it
->>> test.switch_window()
-title: Hippocampus M430v2 BXD 06/06 PDNN : 1455854_a_at: Display Trait
-
-Click on Calculate Correlations
->>> test.click('''//*[@id="title3"]''')
-clicked: Calculate Correlations
-
-Click on Compute
->>> test.click('''/html/body/table/tbody/tr[3]/td/table/tbody/tr/td/form/p[6]/table/tbody/tr/td/div/div/span/table/tbody/tr/td/input[3]''')
-clicked: Compute
-
-Another new window
->>> test.switch_window()
-title: Correlation
-
-Sleep a bunch because this can take a while
->>> sleep(25)
-
-Ensure the Sample rho is the exepcted 1.000 because it should be the same record
->>> test.get_text('''/html/body/table/tbody/tr[3]/td/table/tbody/tr/td/form/table/tbody/tr[2]/td/div/table/tbody/tr[2]/td[9]/a''')
-text: 1.000
-
-"""
-
-from browser_run import *
-
-testmod()
diff --git a/webtests/libpeerconnection.log b/webtests/libpeerconnection.log
deleted file mode 100644
index e69de29b..00000000
--- a/webtests/libpeerconnection.log
+++ /dev/null
diff --git a/webtests/marker_regression_test.py b/webtests/marker_regression_test.py
deleted file mode 100644
index 9b4a4acb..00000000
--- a/webtests/marker_regression_test.py
+++ /dev/null
@@ -1,53 +0,0 @@
-"""
-Test calculate correlations
-
->>> test.get("http://genenetwork.org")
-title: GeneNetwork
-
-Choose the type
->>> test.click_option('''//*[@id="tissue"]''', 'Liver mRNA')
-
-Enter the Get Any
->>> test.enter_text('''//*[@id="tfor"]''', 'grin2b')
-text: grin2b
-
-Search
->>> test.click('//*[@id="btsearch"]')
-clicked: Search
-
-Choose the second result
->>> test.click('''/html/body/table/tbody/tr[3]/td/table/tbody/tr/td/form/p/table/tbody/tr[3]/td/div/table/tbody/tr[3]/td[2]/a''')
-clicked: 1431700_at_A
-
-A new window is created, so we switch to it
->>> test.switch_window()
-title: GSE16780 UCLA Hybrid MDP Liver Affy HT M430A (Sep11) RMA : 1431700_at_A: Display Trait
-
-Click on Mapping Tools
->>> test.click('''//*[@id="title4"]''')
-clicked: Mapping Tools
-
-Click on Marker Regression tab
->>> test.click('''//*[@id="mapping_tabs"]/ul/li[2]/a''')
-clicked: Marker Regression
-
-Click on Compute
->>> test.click('''//*[@id="mappingtabs-2"]/span/table/tbody/tr[1]/td/input''')
-clicked: Compute
-
-Another new window
->>> test.switch_window()
-title: Genome Association Result
-
-Sleep a bunch because this can take a while
->>> sleep(60)
-
-Ensure that the LRS of the top record is the exepcted value
->>> test.get_text('''//*[@id="1"]/td[2]''')
-text: 11.511
-
-"""
-
-from browser_run import *
-
-testmod()
diff --git a/webtests/show_trait_js_test.py b/webtests/show_trait_js_test.py
deleted file mode 100644
index 34ffd3b7..00000000
--- a/webtests/show_trait_js_test.py
+++ /dev/null
@@ -1,40 +0,0 @@
-"""
-Test if JS is working on the show trait page
-
->>> test.get("alexandria.uthsc.edu:89")
-title: GeneNetwork
-
-Choose the species
->>> test.click_option('''//*[@id="species"]''', 'Human')
-
-Choose the group
->>> test.click_option('''//*[@id="cross"]''', 'Human Brain Transcriptome (Yale/Kavli)')
-
-Choose the type
->>> test.click_option('''//*[@id="tissue"]''', 'Orbital Prefrontal Cortex mRNA')
-
-Enter the Get Any
->>> test.enter_text('''//*[@id="tfor"]''', 'shh')
-text: shh
-
-Search
->>> test.click('//*[@id="btsearch"]')
-clicked: Search
-
-Choose the first result
->>> test.click('''//*[@id="KIN_YSM_OFC_0711::3081205"]/td[2]/a''')
-clicked: 3081205
-
-A new window is created, so we switch to it
->>> test.switch_window()
-title: KIN/YSM Human OFC Affy Hu-Exon 1.0 ST (Jul11) Quantile : 3081205: Display Trait
-
-Check that the Calculate Correlations tab is closed (if javascript isn't working, it will be open)
->>> test.get_element_style('''//*[@id="sectionbody3"]''')
-style: display: none;
-
-"""
-
-from browser_run import *
-
-testmod()
diff --git a/webtests/test_runner.py b/webtests/test_runner.py
deleted file mode 100644
index b5b590a6..00000000
--- a/webtests/test_runner.py
+++ /dev/null
@@ -1,26 +0,0 @@
-import unittest
-import doctest
-import glob
-
-tests = ("correlation_test",
- "correlation_matrix_test",
- "marker_regression_test",
- "show_trait_js_test")
-
-
-def main():
- tests = glob.glob("*_test.py")
-
- suite = unittest.TestSuite()
-
- for testname in tests:
- test = testname.rsplit(".", 1)[0]
- print("Test is:", test)
- mod = __import__(test)
- suite.addTest(doctest.DocTestSuite(mod))
-
- runner = unittest.TextTestRunner()
- runner.run(suite)
-
-if __name__ == '__main__':
- main()
generated by cgit v1.2.3 (git 2.44.0) at 2024-11-23 07:36:33 +0000