diff options
| -rwxr-xr-x | wqflask/wqflask/marker_regression/marker_regression.py | 18 | ||||
| -rw-r--r-- | wqflask/wqflask/templates/marker_regression.html | 25 |
2 files changed, 37 insertions, 6 deletions
diff --git a/wqflask/wqflask/marker_regression/marker_regression.py b/wqflask/wqflask/marker_regression/marker_regression.py index c9451154..c06ab7e8 100755 --- a/wqflask/wqflask/marker_regression/marker_regression.py +++ b/wqflask/wqflask/marker_regression/marker_regression.py @@ -308,7 +308,7 @@ class MarkerRegression(object): self.js_data = dict( qtl_results = self.pure_qtl_results, - lrs_array = self.lrs_array, + lrs_values = self.lrs_values, ) @@ -504,12 +504,20 @@ class MarkerRegression(object): self.lrs_values = [marker['lrs_value'] for marker in self.dataset.group.markers.markers] print("self.lrs_values is:", pf(self.lrs_values)) + lrs_values_sorted = sorted(self.lrs_values) + + print("lrs_values_sorted is:", pf(lrs_values_sorted)) print("int(self.num_perm*0.37-1)", pf(int(self.num_perm*0.37-1))) - + + lrs_values_length = len(lrs_values_sorted) + + def lrs_threshold(place): + return lrs_values_sorted[int((lrs_values_length * place) -1)] + self.lrs_thresholds = Bunch( - suggestive = self.lrs_values[int(self.num_perm*0.37-1)], - significant = self.lrs_values[int(self.num_perm*0.95-1)], - highly_significant = self.lrs_values[int(self.num_perm*0.99-1)] + suggestive = lrs_threshold(.37), + significant = lrs_threshold(.95), + highly_significant = lrs_threshold(.99), ) #self.lrs_thresholds = Bunch( diff --git a/wqflask/wqflask/templates/marker_regression.html b/wqflask/wqflask/templates/marker_regression.html index aeb05132..b5477070 100644 --- a/wqflask/wqflask/templates/marker_regression.html +++ b/wqflask/wqflask/templates/marker_regression.html @@ -18,9 +18,32 @@ <div class="container"> <div id="manhattan_plots" class="manhattan_plots"></div> <div id="permutation_histogram" class="permutation_histogram"></div> + + <table class="table table-hover table-striped table-bordered"> + <thead> + <tr> + <td>Index</td> + <td>LRS</td> + <td>Chr</td> + <td>Mb</td> + <td>Locus</td> + </tr> + </thead> + <tbody> + {% for marker in filtered_results %} + <tr> + <td>{{loop.index}}</td> + <td>{{marker.lrs_value}}</td> + <td>{{marker.chr}}</td> + <td>{{marker.Mb}}</td> + <td>{{marker.name}}</td> + </tr> + {% endfor %} + </tbody> + </table> + </div> - <!-- End of body --> {% endblock %} |