diff options
| -rw-r--r-- | etc/default_settings.py | 3 | ||||
| -rw-r--r-- | wqflask/wqflask/correlation/rust_correlation.py | 9 |
2 files changed, 9 insertions, 3 deletions
diff --git a/etc/default_settings.py b/etc/default_settings.py index a0d01de0..ff84f021 100644 --- a/etc/default_settings.py +++ b/etc/default_settings.py @@ -33,6 +33,9 @@ REDIS_URL = "redis://:@localhost:6379/0" # gn2-proxy GN2_PROXY = "http://localhost:8080" +# GN PROXY +GN_PROXY_URL="https://genenetwork.org/gn3-proxy/" + # ---- MySQL SQL_URI = "mysql://gn2:mysql_password@localhost/db_webqtl_s" diff --git a/wqflask/wqflask/correlation/rust_correlation.py b/wqflask/wqflask/correlation/rust_correlation.py index 10513563..37e2ba76 100644 --- a/wqflask/wqflask/correlation/rust_correlation.py +++ b/wqflask/wqflask/correlation/rust_correlation.py @@ -221,9 +221,12 @@ def __compute_lit_corr__( this_trait, this_dataset) with database_connector() as conn: - return compute_all_lit_correlation( - conn=conn, trait_lists=list(geneid_dict.items()), - species=species, gene_id=this_trait_geneid) + return reduce( + lambda acc, lit: {**acc, **lit}, + compute_all_lit_correlation( + conn=conn, trait_lists=list(geneid_dict.items()), + species=species, gene_id=this_trait_geneid), + {}) return {} |