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-rw-r--r--wqflask/wqflask/marker_regression/run_mapping.py2
1 files changed, 1 insertions, 1 deletions
diff --git a/wqflask/wqflask/marker_regression/run_mapping.py b/wqflask/wqflask/marker_regression/run_mapping.py
index 7a2b9aaa..059b0f31 100644
--- a/wqflask/wqflask/marker_regression/run_mapping.py
+++ b/wqflask/wqflask/marker_regression/run_mapping.py
@@ -109,6 +109,7 @@ class RunMapping:
self.mapping_results_path = "{}{}.csv".format(
webqtlConfig.GENERATED_IMAGE_DIR, mapping_results_filename)
+ self.pair_scan = False
self.manhattan_plot = False
if 'manhattan_plot' in start_vars:
if start_vars['manhattan_plot'].lower() != "false":
@@ -237,7 +238,6 @@ class RunMapping:
else:
self.method = "em"
self.model = start_vars['mapmodel_rqtl']
- self.pair_scan = False
if 'pair_scan' in start_vars:
self.pair_scan = True
if self.permCheck and self.num_perm > 0: