diff options
| -rw-r--r-- | wqflask/wqflask/api/router.py | 5 |
1 files changed, 3 insertions, 2 deletions
diff --git a/wqflask/wqflask/api/router.py b/wqflask/wqflask/api/router.py index 3708401b..4cd10b37 100644 --- a/wqflask/wqflask/api/router.py +++ b/wqflask/wqflask/api/router.py @@ -3,7 +3,8 @@ from __future__ import absolute_import, division, print_function import os, io, csv, json, datetime, requests -from zipfile import ZipFile +import zlib +from zipfile import ZipFile, ZIP_DEFLATED import StringIO @@ -757,7 +758,7 @@ def get_genotypes(group_name, file_format="csv"): gmap_file = open("{0}/{1}_gmap.csv".format(flat_files("genotype/rqtl2"), group_name)) phenotypes = requests.get("http://gn2.genenetwork.org/api/v_pre1/sample_data/" + group_name + "Publish") - with ZipFile(memory_file, 'w') as zf: + with ZipFile(memory_file, 'w', compression=ZIP_DEFLATED) as zf: for this_file in [config_file, geno_file, gmap_file]: zf.writestr(this_file.name.split("/")[-1], this_file.read()) zf.writestr("{0}_pheno.csv".format(group_name), phenotypes.content) |