diff options
| -rw-r--r-- | .DS_Store | bin | 6148 -> 0 bytes | |||
| -rw-r--r-- | .gitignore | 14 | ||||
| -rwxr-xr-x | bin/genenetwork2 | 2 | ||||
| -rw-r--r-- | wqflask/wqflask/static/new/javascript/dataset_menu_structure.json | 95 |
4 files changed, 85 insertions, 26 deletions
diff --git a/.DS_Store b/.DS_Store Binary files differdeleted file mode 100644 index d992942f..00000000 --- a/.DS_Store +++ /dev/null @@ -1,15 +1 @@ -# gitignore *.pyc -*.orig -*.bak -*.cross -*~ -genotype_files/genotype/HSNIH_copy.geno -web/new_genotypes/HSNIH.json -wqflask/secure_server.py -build/ -dist/ -*.egg-info/ -EGG-INFO/ -wqflask/output/* -wqflask/wqflask/static/output/* diff --git a/bin/genenetwork2 b/bin/genenetwork2 index b3a8d8c2..006e87ba 100755 --- a/bin/genenetwork2 +++ b/bin/genenetwork2 @@ -210,7 +210,7 @@ if [ "$1" = '-gunicorn-prod' ] ; then echo PYTHONPATH=$PYTHONPATH if [ -z $SERVER_PORT ]; then echo "ERROR: Provide a SERVER_PORT" ; exit 1 ; fi PID=$TMPDIR/gunicorn.$USER.pid - cmd="--bind 0.0.0.0:$SERVER_PORT --pid $PID -k eventlet --workers 20 --keep-alive 1200 --max-requests 1000 --timeout 1200 wsgi" + cmd="--bind 0.0.0.0:$SERVER_PORT --pid $PID -k eventlet --workers 20 --keep-alive 6000 --max-requests 1000 --timeout 1200 wsgi" echo RUNNING gunicorn $cmd gunicorn $cmd exit $? diff --git a/wqflask/wqflask/static/new/javascript/dataset_menu_structure.json b/wqflask/wqflask/static/new/javascript/dataset_menu_structure.json index 81185136..d61168eb 100644 --- a/wqflask/wqflask/static/new/javascript/dataset_menu_structure.json +++ b/wqflask/wqflask/static/new/javascript/dataset_menu_structure.json @@ -2591,11 +2591,41 @@ ], "Liver mRNA": [ [ + "852", + "NIA-AgBXD-Liv_HFD-0818", + "NIA Aging BXD HFD Liver Affy Clariom S Gene Level (Aug18) RMA **" + ], + [ + "857", + "EPFLMouseLiverCDHFDRMA0818", + "EPFL/LISP BXD CD+HFD Liver Affy Mouse Gene 1.0 ST (Aug18) RMA" + ], + [ + "859", + "EPFLMouseLiverCDRMA0818", + "EPFL/LISP BXD CD Liver Affy Mouse Gene 1.0 ST (Aug18) RMA" + ], + [ + "851", + "NIA-AgBXD-Liv_CDHFD-0818", + "NIA Aging BXD CD+HFD Liver Affy Clariom S Gene Level (Aug18) RMA **" + ], + [ + "853", + "NIA-AgBXD-Liv_CD-0818", + "NIA Aging BXD CD Liver Affy Clariom S Gene Level (Aug18) RMA **" + ], + [ "818", "UCLA_BXD_Liv_Jan16", "UCLA BXD Liver Affy M430 2.0 (Jan16) RMA" ], [ + "858", + "EPFLMouseLiverHFDRMA0818", + "EPFL/LISP BXD HFD Liver Affy Mouse Gene 1.0 ST (Aug18) RMA" + ], + [ "430", "EPFLMouseLiverRMA0413", "EPFL/LISP BXD CD+HFD Liver Affy Mouse Gene 1.0 ST (Apr13) RMA" @@ -2611,6 +2641,11 @@ "EPFL/LISP BXD CD Liver Affy Mouse Gene 1.0 ST (Apr13) RMA" ], [ + "848", + "EPFLMouseLiverHFCEx0413", + "EPFL/LISP BXD HFC Liver Affy Mouse Gene 1.0 ST (Apr13) RMA Exon Level" + ], + [ "433", "EPFLMouseLiverBothExRMA0413", "EPFL/LISP BXD CD+HFD Liver Affy Mouse Gene 1.0 ST (Apr13) RMA Exon Level" @@ -2621,11 +2656,6 @@ "EPFL/LISP BXD CD Liver Affy Mouse Gene 1.0 ST (Apr13) RMA Exon Level" ], [ - "848", - "EPFLMouseLiverHFCEx0413", - "EPFL/LISP BXD HFC Liver Affy Mouse Gene 1.0 ST (Apr13) RMA Exon Level" - ], - [ "700", "UTHSC-VGX_MmBXDHepatocytesRMA1014", "UT-VGX Hepatocytes Affy Mouse Gene 1.0 ST Gene Level (Oct14) RMA" @@ -3034,17 +3064,17 @@ [ "843", "UTHSC-BXD-Harv_Liv-0118", - "UTHSC BXD Harvested Liver RNA-Seq (Jan18) Log2 **" - ], - [ - "842", - "UTHSC-BXD-Liv-0917", - "UTHSC BXD Liver Affy Clariom S GeneLevel Main (Sep17) RMA **" + "UTHSC BXD Harvested Liver RNA-Seq (Aug18) Log2 **" ], [ "850", "UTHSC-BXD-Liv-0818", "UTHSC BXD Liver Affy Clariom S GeneLevel Main (Aug18) RMA **" + ], + [ + "842", + "UTHSC-BXD-Liv-0917", + "UTHSC BXD Liver Affy Clariom S GeneLevel Main (Sep17) RMA **" ] ], "Phenotypes": [ @@ -3658,12 +3688,43 @@ }, "rat": { "HSNIH-Palmer": { + "Hippocampus mRNA": [ + [ + "862", + "HSNIH-Rat-LHB-RSeq-0818", + "HSNIH-Palmer Lateral Habenula RNA-Seq (Aug18) rlog" + ] + ], + "Nucleus Accumbens mRNA": [ + [ + "860", + "HSNIH-Rat-Acbc-RSeq-0818", + "HSNIH-Palmer Nucleus Accumbens Core RNA-Seq (Aug18) rlog" + ] + ], "Phenotypes": [ [ "652", "HSNIH-PalmerPublish", "HSNIH-Palmer Published Phenotypes" ] + ], + "Prefrontal Cortex mRNA": [ + [ + "864", + "HSNIH-Rat-VoLo-RSeq-0818", + "HSNIH-Palmer Orbitofrontal Cortex RNA-Seq (Aug18) rlog" + ], + [ + "863", + "HSNIH-Rat-PL-RSeq-0818", + "HSNIH-Palmer Prelimbic Cortex RNA-Seq (Aug18) rlog" + ], + [ + "861", + "HSNIH-Rat-IL-RSeq-0818", + "HSNIH-Palmer Infralimbic Cortex RNA-Seq (Aug18) rlog" + ] ] }, "HSNIH-RGSMC": { @@ -5410,6 +5471,18 @@ [ "Phenotypes", "Phenotypes" + ], + [ + "Hippocampus mRNA", + "Hippocampus mRNA" + ], + [ + "Nucleus Accumbens mRNA", + "Nucleus Accumbens mRNA" + ], + [ + "Prefrontal Cortex mRNA", + "Prefrontal Cortex mRNA" ] ], "HSNIH-RGSMC": [ |