diff options
| -rw-r--r-- | doc/README.org | 24 |
1 files changed, 22 insertions, 2 deletions
diff --git a/doc/README.org b/doc/README.org index 85c6da1c..7d4d7e2d 100644 --- a/doc/README.org +++ b/doc/README.org @@ -62,10 +62,29 @@ cd ~/genenetwork/guix-gn-latest ./pre-inst-env guix package -i genenetwork2 #+end_src bash +Make a note of the paths with + +#+begin_src bash +./pre-inst-env guix package --search-paths +#+end_src bash + ** Run GN2 +After setting the paths for the server + #+begin_src bash export PATH=~/.guix-profile/bin:$PATH +export PYTHONPATH="$HOME/.guix-profile/lib/python2.7/site-packages" +export R_LIBS_SITE="$HOME/.guix-profile/site-library/" +export GUIX_GTK3_PATH="$HOME/.guix-profile/lib/gtk-3.0" +export GI_TYPELIB_PATH="$HOME/.guix-profile/lib/girepository-1.0" +export XDG_DATA_DIRS="$HOME/.guix-profile/share" +export GIO_EXTRA_MODULES="$HOME/.guix-profile/lib/gio/modules" +#+end_src bash + +run the main script (in ~/.guix-profile/bin) + +#+begin_src bash genenetwork2 #+end_src bash @@ -125,8 +144,9 @@ default_settings.py and pass it into GN2 with : ./bin/genenetwork2 $HOME/my_settings.py -and everything *should* work. This way we develop against -the exact same dependency graph of software. +and everything *should* work (note the full path to the settings +file). This way we develop against the exact same dependency graph of +software. * Source deployment and other information on reproducibility |