diff options
| -rw-r--r-- | wqflask/tests/wqflask/marker_regression/test_qtlreaper_mapping.py | 22 |
1 files changed, 22 insertions, 0 deletions
diff --git a/wqflask/tests/wqflask/marker_regression/test_qtlreaper_mapping.py b/wqflask/tests/wqflask/marker_regression/test_qtlreaper_mapping.py new file mode 100644 index 00000000..7ece663a --- /dev/null +++ b/wqflask/tests/wqflask/marker_regression/test_qtlreaper_mapping.py @@ -0,0 +1,22 @@ +import unittest +from unittest import mock +from wqflask.marker_regression.qtlreaper_mapping import gen_pheno_txt_file +from wqflask.marker_regression.qtlreaper_mapping import natural_sort + +#issues some methods in genofile object are not defined +#modify samples should equal to vals +class TestQtlReaperMapping(unittest.TestCase): + @mock.patch("wqflask.marker_regression.qtlreaper_mapping.TEMPDIR", "/home/user/data") + def test_gen_pheno_txt_file(self): + vals=["V1","x","V4","V3","x"] + samples=["S1","S2","S3","S4","S5"] + trait_filename="trait_file" + with mock.patch("builtins.open", mock.mock_open())as mock_open: + gen_pheno_txt_file(samples=samples,vals=vals,trait_filename=trait_filename) + mock_open.assert_called_once_with("/home/user/data/gn2/trait_file.txt","w") + filehandler=mock_open() + write_calls= [mock.call('Trait\t'),mock.call('S1\tS3\tS4\n'),mock.call('T1\t'),mock.call('V1\tV4\tV3')] + + filehandler.write.assert_has_calls(write_calls) + + |