diff options
| -rwxr-xr-x | wqflask/base/trait.py | 7 | ||||
| -rw-r--r-- | wqflask/wqflask/correlation/show_corr_results.py | 2 |
2 files changed, 1 insertions, 8 deletions
diff --git a/wqflask/base/trait.py b/wqflask/base/trait.py index db76ddea..401b729c 100755 --- a/wqflask/base/trait.py +++ b/wqflask/base/trait.py @@ -286,7 +286,6 @@ class GeneralTrait(object): escape(self.dataset.name), escape(self.name)) trait_info = g.db.execute(query).fetchone() - #print("trait_info is: ", pf(trait_info)) #XZ, 05/08/2009: We also should use Geno.Id to find marker instead of just using Geno.Name # to avoid the problem of same marker name from different species. elif self.dataset.type == 'Geno': @@ -319,7 +318,6 @@ class GeneralTrait(object): #XZ: assign SQL query result to trait attributes. for i, field in enumerate(self.dataset.display_fields): - print(" mike: {} -> {} - {}".format(field, type(trait_info[i]), trait_info[i])) setattr(self, field, trait_info[i]) if self.dataset.type == 'Publish': @@ -329,9 +327,6 @@ class GeneralTrait(object): self.homologeneid = None - print("self.geneid is:", self.geneid) - print(" type:", type(self.geneid)) - print("self.dataset.group.name is:", self.dataset.group.name) if self.dataset.type == 'ProbeSet' and self.dataset.group and self.geneid: #XZ, 05/26/2010: From time to time, this query get error message because some geneid values in database are not number. #XZ: So I have to test if geneid is number before execute the query. @@ -356,7 +351,6 @@ class GeneralTrait(object): InbredSet.SpeciesId = Species.Id AND Species.TaxonomyId = Homologene.TaxonomyId """ % (escape(str(self.geneid)), escape(self.dataset.group.name)) - print("-> query is:", query) result = g.db.execute(query).fetchone() #else: # result = None @@ -388,7 +382,6 @@ class GeneralTrait(object): Geno.Name = '{}' and Geno.SpeciesId = Species.Id """.format(self.dataset.group.species, self.locus) - print("query is:", query) result = g.db.execute(query).fetchone() self.locus_chr = result[0] self.locus_mb = result[1] diff --git a/wqflask/wqflask/correlation/show_corr_results.py b/wqflask/wqflask/correlation/show_corr_results.py index f69fe551..11eca936 100644 --- a/wqflask/wqflask/correlation/show_corr_results.py +++ b/wqflask/wqflask/correlation/show_corr_results.py @@ -157,7 +157,7 @@ class CorrelationResults(object): trait_object = GeneralTrait(dataset=self.dataset, name=trait, get_qtl_info=True) trait_object.sample_r = self.correlation_data[trait][0] trait_object.sample_p = self.correlation_data[trait][1] - trait_object_num_overlap = self.correlation_data[trait][2] + trait_object.num_overlap = self.correlation_data[trait][2] self.correlation_results.append(trait_object) #self.correlation_data_slice[trait] = self.correlation_data[trait] |