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-rw-r--r--wqflask/wqflask/correlation/correlation_gn3_api.py24
1 files changed, 7 insertions, 17 deletions
diff --git a/wqflask/wqflask/correlation/correlation_gn3_api.py b/wqflask/wqflask/correlation/correlation_gn3_api.py
index dec84728..46202ca3 100644
--- a/wqflask/wqflask/correlation/correlation_gn3_api.py
+++ b/wqflask/wqflask/correlation/correlation_gn3_api.py
@@ -180,25 +180,15 @@ def compute_correlation(start_vars, method="pearson"):
correlation_results = correlation_results[0:corr_return_results]
- compute_all = True
+ compute_all = True # later to be passed as argument
- correlation_results = compute_corr_for_top_results(correlation_results,
- this_trait,
- this_dataset,
- target_dataset,
- corr_type)
+ if (compute_all):
- # if corr_type != "tissue" and this_dataset_type == "ProbeSet" and target_dataset_type == "ProbeSet":
-
- # tissue_result = tissue_for_trait_lists(
- # correlation_results, this_dataset, this_trait)
-
- # if corr_type != "lit" and this_dataset_type == "ProbeSet" and target_dataset_type == "ProbeSet":
- # lit_result = lit_for_trait_list(
- # correlation_results, this_dataset, this_trait)
-
- # if corr_type != "sample":
- # pass
+ correlation_results = compute_corr_for_top_results(correlation_results,
+ this_trait,
+ this_dataset,
+ target_dataset,
+ corr_type)
correlation_data = {"correlation_results": correlation_results,
"this_trait": this_trait.name,