diff options
| -rw-r--r-- | wqflask/maintenance/dataset/load_phenotypes.py | 15 |
1 files changed, 14 insertions, 1 deletions
diff --git a/wqflask/maintenance/dataset/load_phenotypes.py b/wqflask/maintenance/dataset/load_phenotypes.py index 91bc2d15..274b8593 100644 --- a/wqflask/maintenance/dataset/load_phenotypes.py +++ b/wqflask/maintenance/dataset/load_phenotypes.py @@ -1,13 +1,26 @@ import sys +import csv import utilities def main(argv): + # config = utilities.get_config(argv[1]) print "config:" for item in config.items('config'): print "\t%s" % (str(item)) - + # + datafile = open(config.get('config', 'datafile'), 'r') + phenotypedata = csv.reader(datafile, delimiter='\t', quotechar='"') + for row in phenotypedata: + #print row + pass + # + metafile = open(config.get('config', 'metafile'), 'r') + phenotypemeta = csv.reader(metafile, delimiter='\t', quotechar='"') + for row in phenotypemeta: + print row[1] + if __name__ == "__main__": print "command line arguments:\n\t%s" % sys.argv main(sys.argv) |