diff options
| -rw-r--r-- | wqflask/wqflask/marker_regression/marker_regression.py | 7 | ||||
| -rw-r--r-- | wqflask/wqflask/marker_regression/marker_regression_gn1.py | 17 | ||||
| -rw-r--r-- | wqflask/wqflask/templates/marker_regression_gn1.html | 9 | ||||
| -rw-r--r-- | wqflask/wqflask/views.py | 1 |
4 files changed, 22 insertions, 12 deletions
diff --git a/wqflask/wqflask/marker_regression/marker_regression.py b/wqflask/wqflask/marker_regression/marker_regression.py index 43c99744..745cdfaa 100644 --- a/wqflask/wqflask/marker_regression/marker_regression.py +++ b/wqflask/wqflask/marker_regression/marker_regression.py @@ -94,13 +94,18 @@ class MarkerRegression(object): self.endMb = start_vars['endMb'] if "graphWidth" in start_vars: self.graphWidth = start_vars['graphWidth'] - if "startMb" in start_vars: #ZS: This is to ensure showGenes is checked the first time you open the mapping page, since startMb will only not be set during the first load + if "startMb" in start_vars: #ZS: This is to ensure showGenes, Legend, etc are checked the first time you open the mapping page, since startMb will only not be set during the first load if "showGenes" in start_vars: self.showGenes = start_vars['showGenes'] else: self.showGenes = False + if "viewLegend" in start_vars: + self.viewLegend = start_vars['viewLegend'] + else: + self.viewLegend = False else: self.showGenes = "ON" + self.viewLegend = "ON" self.dataset.group.get_markers() if self.mapping_method == "gemma": diff --git a/wqflask/wqflask/marker_regression/marker_regression_gn1.py b/wqflask/wqflask/marker_regression/marker_regression_gn1.py index b338d8ea..0a4846fe 100644 --- a/wqflask/wqflask/marker_regression/marker_regression_gn1.py +++ b/wqflask/wqflask/marker_regression/marker_regression_gn1.py @@ -282,7 +282,10 @@ class MarkerRegression(object): self.LRS_LOD = start_vars['score_type'] self.cutoff = start_vars['cutoff'] self.intervalAnalystChecked = False - self.legendChecked = False + if 'viewLegend' in start_vars.keys(): + self.legendChecked = start_vars['viewLegend'] + else: + self.legendChecked = False if 'showGenes' in start_vars.keys(): self.geneChecked = start_vars['showGenes'] else: @@ -805,7 +808,7 @@ class MarkerRegression(object): if self.multipleInterval: self.drawMultiTraitName(fd, canvas, gifmap, showLocusForm, offset=newoffset) elif self.legendChecked: - self.drawLegendPanel(fd, canvas, offset=newoffset, zoom = zoom) + self.drawLegendPanel(canvas, offset=newoffset, zoom = zoom) else: pass @@ -1063,7 +1066,7 @@ class MarkerRegression(object): gifmap.areas.append(Areas) - def drawLegendPanel(self, fd, canvas, offset= (40, 120, 80, 10), zoom = 1, locLocation= None): + def drawLegendPanel(self, canvas, offset= (40, 120, 80, 10), zoom = 1, locLocation= None): xLeftOffset, xRightOffset, yTopOffset, yBottomOffset = offset plotWidth = canvas.size[0] - xLeftOffset - xRightOffset plotHeight = canvas.size[1] - yTopOffset - yBottomOffset @@ -1118,16 +1121,16 @@ class MarkerRegression(object): labelFont=pid.Font(ttf="verdana",size=12*fontZoom) labelColor = pid.black if self.selectedChr == -1: - string1 = 'Mapping for Dataset: %s, mapping on All Chromosomes' % fd.RISet + string1 = 'Mapping for Dataset: %s, mapping on All Chromosomes' % self.dataset.group.name else: - string1 = 'Mapping for Dataset: %s, mapping on Chromosome %s' % (fd.RISet,self.genotype[0].name) + string1 = 'Mapping for Dataset: %s, mapping on Chromosome %s' % (self.dataset.group.name, self.selectedChr) if self.controlLocus: string2 = 'Using %s as control' % self.controlLocus else: string2 = 'Using Haldane mapping function with no control for other QTLs' d = 4+ max(canvas.stringWidth(string1,font=labelFont),canvas.stringWidth(string2,font=labelFont)) - if fd.identification: - identification = "Trait ID: %s" % fd.identification + if self.this_trait.name: + identification = "Trait ID: %s : %s" % (self.dataset.fullname, self.this_trait.name) canvas.drawString(identification,canvas.size[0] - xRightOffset-d,20*fontZoom,font=labelFont,color=labelColor) canvas.drawString(string1,canvas.size[0] - xRightOffset-d,35*fontZoom,font=labelFont,color=labelColor) diff --git a/wqflask/wqflask/templates/marker_regression_gn1.html b/wqflask/wqflask/templates/marker_regression_gn1.html index 097cc873..ab75d5e3 100644 --- a/wqflask/wqflask/templates/marker_regression_gn1.html +++ b/wqflask/wqflask/templates/marker_regression_gn1.html @@ -40,7 +40,7 @@ {% endif %} </div> <div id="gn1_map_options" class="col-xs-5" style="border:2px solid black; padding: 10px; margin: 10px;"> - <div class="col-xs-8" style="padding-left: 0px;"> + <div class="col-xs-8" style="padding: 0px;"> <table> <tr> <td><b>Chr: </b></td> @@ -55,7 +55,7 @@ </tr> <tr> <td><b>View: </b></td> - <td> + <td style="padding: 5px;"> <input type="text" name="startMb" size="10"> to <input type="text" name="endMb" size="10"> </td> </tr> @@ -67,8 +67,9 @@ </tr> </table> </div> - <div class="col-xs-4"> - <input type="checkbox" name="showGenes" class="checkbox" style="display: inline;" {% if geneChecked|upper == "ON" %}value="ON" checked{% endif %}> <span>Gene Track </span> <span style="color:red;">*</span> + <div class="col-xs-4" style="padding: 0px;"> + <input type="checkbox" name="showGenes" class="checkbox" style="display: inline; margin-top: 0px;" {% if geneChecked|upper == "ON" %}value="ON" checked{% endif %}> <span style="font-size: 12px;">Gene Track </span> <span style="color:red;">*</span><br> + <input type="checkbox" name="viewLegend" class="checkbox" style="display: inline; margin-top: 0px;" {% if legendChecked|upper == "ON" %}value="ON" checked{% endif %}> <span style="font-size: 12px;">Legend </span> </div> </div> </div> diff --git a/wqflask/wqflask/views.py b/wqflask/wqflask/views.py index d3db044d..f1b55b51 100644 --- a/wqflask/wqflask/views.py +++ b/wqflask/wqflask/views.py @@ -358,6 +358,7 @@ def marker_regression_page(): 'endMb', 'graphWidth', 'showGenes', + 'viewLegend', 'mapmethod_rqtl_geno', 'mapmodel_rqtl_geno' ) |