diff options
| -rw-r--r-- | wqflask/base/trait.py | 8 | ||||
| -rw-r--r-- | wqflask/wqflask/collect.py | 15 | ||||
| -rw-r--r-- | wqflask/wqflask/search_results.py | 3 |
3 files changed, 8 insertions, 18 deletions
diff --git a/wqflask/base/trait.py b/wqflask/base/trait.py index b51b8c72..4bce25ac 100644 --- a/wqflask/base/trait.py +++ b/wqflask/base/trait.py @@ -79,13 +79,7 @@ class GeneralTrait(object): dataset=self.dataset.name, description=self.description_display, mean=self.mean) - - - def get_info(self): - """For lots of traits just use get_trait_info in dataset instead...that will be way - more efficient""" - self.dataset.get_trait_info([self], - webqtlDatabaseFunction.retrieve_species(self.dataset.group.name)) + def get_name(self): stringy = "" diff --git a/wqflask/wqflask/collect.py b/wqflask/wqflask/collect.py index 958a1e43..4ea8407c 100644 --- a/wqflask/wqflask/collect.py +++ b/wqflask/wqflask/collect.py @@ -297,13 +297,13 @@ def view_collection(): params = request.args print("PARAMS in view collection:", params) - if "uc_id" in params: - uc_id = params['uc_id'] - uc = model.UserCollection.query.get(uc_id) - traits = json.loads(uc.members) - print("traits are:", traits) - else: - traits = AnonCollection().get_traits() + #if "uc_id" in params: + uc_id = params['uc_id'] + uc = model.UserCollection.query.get(uc_id) + traits = json.loads(uc.members) + print("traits are:", traits) + #else: + # traits = AnonCollection().get_traits() print("in view_collection traits are:", traits) @@ -316,7 +316,6 @@ def view_collection(): trait_ob = trait.GeneralTrait(name=name, dataset_name=dataset_name) trait_ob.retrieve_info(get_qtl_info=True) - trait_ob.get_info() trait_obs.append(trait_ob) json_version.append(trait_ob.jsonable()) diff --git a/wqflask/wqflask/search_results.py b/wqflask/wqflask/search_results.py index 4c4e1ef2..a62f2d51 100644 --- a/wqflask/wqflask/search_results.py +++ b/wqflask/wqflask/search_results.py @@ -107,13 +107,10 @@ class SearchResultPage(object): #### Excel file needs to be generated #### - #print("foo locals are:", locals()) trait_id = result[0] this_trait = GeneralTrait(dataset=self.dataset, name=trait_id, get_qtl_info=True, get_sample_info=False) self.trait_list.append(this_trait) - self.dataset.get_trait_info(self.trait_list, species) - #def get_group_species_tree(self): # self.species_groups = collections.default_dict(list) # for key in self.results: |