diff options
5 files changed, 613 insertions, 116 deletions
diff --git a/wqflask/maintenance/gen_select_dataset.py b/wqflask/maintenance/gen_select_dataset.py index a2ad8c91..fda46792 100755 --- a/wqflask/maintenance/gen_select_dataset.py +++ b/wqflask/maintenance/gen_select_dataset.py @@ -123,12 +123,12 @@ def get_types(groups): def phenotypes_exist(group_name): - print("group_name:", group_name) + #print("group_name:", group_name) Cursor.execute("""select Name from PublishFreeze where PublishFreeze.Name = %s""", (group_name+"Publish")) results = Cursor.fetchone() - print("RESULTS:", results) + #print("RESULTS:", results) if results != None: return True @@ -136,12 +136,12 @@ def phenotypes_exist(group_name): return False def genotypes_exist(group_name): - print("group_name:", group_name) + #print("group_name:", group_name) Cursor.execute("""select Name from GenoFreeze where GenoFreeze.Name = %s""", (group_name+"Geno")) results = Cursor.fetchone() - print("RESULTS:", results) + #print("RESULTS:", results) if results != None: return True @@ -220,7 +220,7 @@ def build_datasets(species, group, type_name): # and ProbeFreeze.TissueId = Tissue.Id and ProbeFreeze.InbredSetId = # InbredSet.Id and ProbeSetFreeze.public > 0 order by # ProbeSetFreeze.CreateTime desc""".format(species, group, type_name)) - Cursor.execute("""select ProbeSetFreeze.Name, ProbeSetFreeze.FullName from + Cursor.execute("""select ProbeSetFreeze.Id, ProbeSetFreeze.Name, ProbeSetFreeze.FullName from ProbeSetFreeze, ProbeFreeze, InbredSet, Tissue, Species where Species.Name = %s and Species.Id = InbredSet.SpeciesId and InbredSet.Name = %s and @@ -228,7 +228,16 @@ def build_datasets(species, group, type_name): and ProbeFreeze.TissueId = Tissue.Id and ProbeFreeze.InbredSetId = InbredSet.Id and ProbeSetFreeze.public > 0 order by ProbeSetFreeze.CreateTime desc""", (species, group, type_name)) - return Cursor.fetchall() + + dataset_results = Cursor.fetchall() + datasets = [] + for dataset_info in dataset_results: + this_dataset_info = [] + for info in dataset_info: + this_dataset_info.append(str(info)) + datasets.append(this_dataset_info) + + return datasets def main(): diff --git a/wqflask/wqflask/static/new/javascript/dataset_menu_structure.json b/wqflask/wqflask/static/new/javascript/dataset_menu_structure.json index e790c9c0..da9beb9b 100755 --- a/wqflask/wqflask/static/new/javascript/dataset_menu_structure.json +++ b/wqflask/wqflask/static/new/javascript/dataset_menu_structure.json @@ -58,18 +58,22 @@ "QSM": { "Leaf mRNA": [ [ + "236", "B1LI0809R", "Barley1 Leaf INOC TTKS (Aug09) RMA" ], [ + "235", "B1LI0809M5", "Barley1 Leaf INOC TTKS (Aug09) MAS5" ], [ + "237", "B1MI0809M5", "Barley1 Leaf MOCK TTKS (Aug09) MAS5" ], [ + "238", "B1MI0809R", "Barley1 Leaf MOCK TTKS (Aug09) RMA" ] @@ -78,14 +82,17 @@ "SXM": { "Embryo mRNA": [ [ + "128", "B139_K_1206_R", "Barley1 Embryo gcRMA SCRI (Dec06)" ], [ + "124", "B139_K_1206_M", "Barley1 Embryo MAS 5.0 SCRI (Dec06)" ], [ + "114", "B150_K_0406_R", "Barley1 Embryo0 gcRMA SCRI (Apr06)" ] @@ -98,16 +105,19 @@ ], "Leaf mRNA": [ [ + "127", "B30_K_1206_M", "Barley1 Leaf MAS 5.0 SCRI (Dec06)" ], [ - "B30_K_1206_R", - "Barley1 Leaf gcRMA SCRI (Dec06)" - ], - [ + "126", "B30_K_1206_Rn", "Barley1 Leaf gcRMAn SCRI (Dec06)" + ], + [ + "125", + "B30_K_1206_R", + "Barley1 Leaf gcRMA SCRI (Dec06)" ] ], "Phenotypes": [ @@ -122,6 +132,7 @@ "DGRP": { "Whole Body mRNA": [ [ + "297", "NCSU_DrosWB_LC_RMA_0111", "NCSU Drosophila Whole Body (Jan11) RMA" ] @@ -130,10 +141,12 @@ "Oregon-R_x_2b3": { "Whole Body mRNA": [ [ + "249", "UAB_DrosWB_LC_RMA_1009", "UAB Whole body D.m. mRNA control (Oct09) RMA" ], [ + "250", "UAB_DrosWB_LE_RMA_1009", "UAB Whole body D.m. mRNA lead (pbAc) (Oct09) RMA" ] @@ -144,18 +157,22 @@ "AD-cases-controls": { "Brain mRNA": [ [ + "314", "GSE5281_F_RMA_N_0709", "GSE5281 Human Brain Normal Full Liang (Jul09) RMA" ], [ + "313", "GSE5281_F_RMA_Alzh_0709", "GSE5281 Human Brain Alzheimer Full Liang (Jul09) RMA" ], [ + "233", "GSE5281_F_RMA0709", "GSE5281 Human Brain Full Liang (Jul09) RMA" ], [ + "232", "GSE5281_RMA0709", "GSE5281 Human Brain Best 102 Liang (Jul09) RMA" ] @@ -164,14 +181,17 @@ "AD-cases-controls-Myers": { "Brain mRNA": [ [ + "234", "GSE15222_F_RI_0409", "GSE15222 Human Brain All Cases Myers (Apr09) RankInv" ], [ + "290", "GSE15222_F_N_RI_0409", "GSE15222 Human Brain Normal Myers (Apr09) RankInv" ], [ + "289", "GSE15222_F_A_RI_0409", "GSE15222 Human Brain Alzheimer Myers (Apr09) RankInv" ] @@ -186,24 +206,28 @@ "Aging-Brain-UCI": { "Entorhinal Cortex mRNA": [ [ + "460", "UCI_EC_0913", "GSE11882 UCI Human Entorhinal Cortex Affy U133 Plus2 (Sep13) RMA" ] ], "Hippocampus mRNA": [ [ + "461", "UCI_HC_0913", "GSE11882 UCI Human Hippocampus Affy U133 Plus2 (Sep13) RMA" ] ], "Postcentral Gyrus mRNA": [ [ + "462", "UCI_PCG_0913", "GSE11882 UCI Human Postcentral Gyrus Affy U133 Plus2 (Sep13) RMA" ] ], "Superior Frontal Gyrus mRNA": [ [ + "463", "UCI_SG_0913", "GSE11882 UCI Human Superior Frontal Gyrus Affy U133 Plus2 (Sep13) RMA" ] @@ -212,24 +236,28 @@ "Brain-Normal-NIH-Gibbs": { "Cerebellum mRNA": [ [ + "481", "GSE15745-GPL6104_Cer0510", "GSE15745 NIH Human Brain Cerebellum ILM humanRef-8 v2.0 (May10) RankInv" ] ], "Pons mRNA": [ [ + "484", "GSE15745-GPL6104_Po0510", "GSE15745 NIH Human Brain Pons ILM humanRef-8 v2.0 (May10) RankInv" ] ], "Prefrontal Cortex mRNA": [ [ + "482", "GSE15745-GPL6104_PFC0510", "GSE15745 NIH Human Brain Prefrontal Cortex ILM humanRef-8 v2.0 (May10) RankInv" ] ], "Temporal Cerebral Wall mRNA": [ [ + "483", "GSE15745-GPL6104_TC0510", "GSE15745 NIH Human Brain Temporal Cerebral ILM humanRef-8 v2.0 (May10) RankInv" ] @@ -238,16 +266,19 @@ "CANDLE": { "Methylation": [ [ + "423", "CANDLE_Meth27_0313", "CANDLE Newborn Cord ILM HumanMethylation27 (Mar13) **" ], [ + "422", "CANDLE_Meth_0313", "CANDLE Newborn Cord ILM HumanMethylation27 (Mar13) Z-Score **" ] ], "Newborn Cord Blood mRNA": [ [ + "324", "CANDLE_NB_0711", "CANDLE Newborn Cord ILMv6.3 (Jun11) QUANT" ] @@ -262,10 +293,12 @@ "CEPH-2004": { "Lymphoblast B-cell mRNA": [ [ + "241", "UT_CEPH_RankInv0909", "UTHSC CEPH B-cells Illumina (Sep09) RankInv" ], [ + "215", "Human_1008", "Monks CEPH B-cells Agilent (Dec04) Log10Ratio" ] @@ -274,470 +307,564 @@ "GTEx": { "Adrenal Gland mRNA": [ [ + "545", "GTEx_log2_Adren_0314", "GTEx Human Adrenal Gland (Mar14) RPKM Log2" ], [ + "495", "GTEx_Adren_0414", "GTEx Human Adrenal Gland (Apr14) RPKM" ] ], "Amygdala mRNA": [ [ + "542", "GTEx_log2_AMY_0314", "GTEx Human Amygdala (Mar14) RPKM Log2" ], [ + "492", "GTEx_AMY_0314", "GTEx Human Amygdala (Mar14) RPKM" ] ], "Anterior Cingulate Cortex mRNA": [ [ + "546", "GTEx_log2_Anter_0314", "GTEx Human Anterior Cingulate Cortex (Mar14) RPKM Log2" ], [ + "496", "GTEx_Anter_0414", "GTEx Human Anterior Cingulate Cortex (Apr14) RPKM" ] ], "Aorta mRNA": [ [ + "547", "GTEx_log2_Aorta_0314", "GTEx Human Aorta (Mar14) RPKM Log2" ], [ + "497", "GTEx_Aorta_0414", "GTEx Human Aorta (Apr14) RPKM" ] ], "Blood, Cells - EBV-Transformed Lymphocytes mRNA": [ [ + "548", "GTEx_log2_Blood_0314", "GTEx Human Blood, Cells - EBV-Transformed Lymphocytes (Mar14) RPKM Log2" ], [ + "498", "GTEx_Blood_0414", "GTEx Human Blood, Cells - EBV-Transformed Lymphocytes (Apr14) RPKM" ] ], "Breast - Mammary Tissue mRNA": [ [ + "549", "GTEx_log2_Breas_0314", "GTEx Human Breast - Mammary Tissue (Mar14) RPKM Log2" ], [ + "499", "GTEx_Breas_0414", "GTEx Human Breast - Mammary Tissue (Apr14) RPKM" ] ], "Caudate mRNA": [ [ + "550", "GTEx_log2_Cauda_0314", "GTEx Human Caudate (Mar14) RPKM Log2" ], [ + "500", "GTEx_Cauda_0414", "GTEx Human Caudate (Apr14) RPKM" ] ], "Cells - EBV-Transformed Lymphocytes mRNA": [ [ + "551", "GTEx_log2_CellsEBV_0314", "GTEx Human Cells - EBV-Transformed Lymphocytes (Mar14) RPKM Log2" ], [ + "501", "GTEx_CellsEBV_0414", "GTEx Human Cells - EBV-Transformed Lymphocytes (Apr14) RPKM" ] ], "Cells - Leukemia Cell Line (CML) mRNA": [ [ + "552", "GTEx_log2_CellsLe_0314", "GTEx Human Cells - Leukemia Cell Line (CML) (Mar14) RPKM Log2" ], [ + "502", "GTEx_CellsLe_0414", "GTEx Human Cells - Leukemia Cell Line (CML) (Apr14) RPKM" ] ], "Cells - Transformed Fibroblasts mRNA": [ [ + "553", "GTEx_log2_CellsTr_0314", "GTEx Human Cells - Transformed Fibroblasts (Mar14) RPKM Log2" ], [ + "503", "GTEx_CellsTr_0414", "GTEx Human Cells - Transformed Fibroblasts (Apr14) RPKM" ] ], "Cerebellar Cortex mRNA": [ [ + "554", "GTEx_log2_CerebC_0314", "GTEx Human Cerebellar Cortex (Mar14) RPKM Log2" ], [ + "504", "GTEx_CerebC_0414", "GTEx Human Cerebellar Cortex (Apr14) RPKM" ] ], "Cerebellar Hemisphere mRNA": [ [ + "555", "GTEx_log2_CerebH_0314", "GTEx Human Cerebellar Hemisphere (Mar14) RPKM Log2" ], [ + "505", "GTEx_CerebH_0414", "GTEx Human Cerebellar Hemisphere (Apr14) RPKM" ] ], "Cerebellum mRNA": [ [ + "543", "GTEx_log2_CER_0314", "GTEx Human Cerebellum (Mar14) RPKM Log2" ], [ + "493", "GTEx_CER_0314", "GTEx Human Cerebellum (Mar14) RPKM" ] ], "Colon - Transverse mRNA": [ [ + "556", "GTEx_log2_Colon_0314", "GTEx Human Colon - Transverse (Mar14) RPKM Log2" ], [ + "506", "GTEx_Colon_0414", "GTEx Human Colon - Transverse (Apr14) RPKM" ] ], "Coronary mRNA": [ [ + "557", "GTEx_log2_Coron_0314", "GTEx Human Coronary (Mar14) RPKM Log2" ], [ + "507", "GTEx_Coron_0414", "GTEx Human Coronary (Apr14) RPKM" ] ], "Esophagus - Mucosa mRNA": [ [ + "558", "GTEx_log2_EsophMuc_0314", "GTEx Human Esophagus - Mucosa (Mar14) RPKM Log2" ], [ + "508", "GTEx_EsophMuc_0414", "GTEx Human Esophagus - Mucosa (Apr14) RPKM" ] ], "Esophagus - Muscularis mRNA": [ [ + "559", "GTEx_log2_EsophMus_0314", "GTEx Human Esophagus - Muscularis (Mar14) RPKM Log2" ], [ + "509", "GTEx_EsophMus_0414", "GTEx Human Esophagus - Muscularis (Apr14) RPKM" ] ], "Fallopian Tube mRNA": [ [ + "560", "GTEx_log2_Fallo_0314", "GTEx Human Fallopian Tube (Mar14) RPKM Log2" ], [ + "510", "GTEx_Fallo_0414", "GTEx Human Fallopian Tube (Apr14) RPKM" ] ], "Frontal Cortex mRNA": [ [ + "561", "GTEx_log2_Front_0314", "GTEx Human Frontal Cortex (Mar14) RPKM Log2" ], [ + "511", "GTEx_Front_0414", "GTEx Human Frontal Cortex (Apr14) RPKM" ] ], "Heart - Atrial Appendage mRNA": [ [ + "562", "GTEx_log2_HeartAt_0314", "GTEx Human Heart - Atrial Appendage (Mar14) RPKM Log2" ], [ + "512", "GTEx_HeartAt_0414", "GTEx Human Heart - Atrial Appendage (Apr14) RPKM" ] ], "Heart - Left Ventricle mRNA": [ [ + "563", "GTEx_log2_HeartLV_0314", "GTEx Human Heart - Left Ventricle (Mar14) RPKM Log2" ], [ + "513", "GTEx_HeartLV_0414", "GTEx Human Heart - Left Ventricle (Apr14) RPKM" ] ], "Hippocampus mRNA": [ [ + "544", "GTEx_log2_HIP_0314", "GTEx Human Hippocampus (Mar14) RPKM Log2" ], [ + "494", "GTEx_HIP_0314", "GTEx Human Hippocampus (Mar14) RPKM" ] ], "Hypothalamus mRNA": [ [ + "564", "GTEx_log2_Hypot_0314", "GTEx Human Hypothalamus (Mar14) RPKM Log2" ], [ + "514", "GTEx_Hypot_0414", "GTEx Human Hypothalamus (Apr14) RPKM" ] ], "Kidney mRNA": [ [ + "565", "GTEx_log2_Kidne_0314", "GTEx Human Kidney (Mar14) RPKM Log2" ], [ + "515", "GTEx_Kidne_0414", "GTEx Human Kidney (Apr14) RPKM" ] ], "Liver mRNA": [ [ + "566", "GTEx_log2_Liver_0314", "GTEx Human Liver (Mar14) RPKM Log2" ], [ + "516", "GTEx_Liver_0414", "GTEx Human Liver (Apr14) RPKM" ] ], "Lung mRNA": [ [ + "567", "GTEx_log2_Lung_0314", "GTEx Human Lung (Mar14) RPKM Log2" ], [ + "517", "GTEx_Lung _0414", "GTEx Human Lung (Apr14) RPKM" ] ], "Muscle mRNA": [ [ + "568", "GTEx_log2_Muscle_0314", "GTEx Human Muscle (Mar14) RPKM Log2" ], [ + "518", "GTEx_Muscl_0414", "GTEx Human Muscle (Apr14) RPKM" ] ], "Nerve - Tibial mRNA": [ [ + "569", "GTEx_log2_Nerve_0314", "GTEx Human Nerve - Tibial (Mar14) RPKM Log2" ], [ + "519", "GTEx_Nerve_0414", "GTEx Human Nerve - Tibial (Apr14) RPKM" ] ], "Nucleus Accumbens mRNA": [ [ + "570", "GTEx_log2_Nucle_0314", "GTEx Human Nucleus Accumbens (Mar14) RPKM Log2" ], [ + "520", "GTEx_Nucle_0414", "GTEx Human Nucleus Accumbens (Apr14) RPKM" ] ], "Ovary mRNA": [ [ + "571", "GTEx_log2_Ovary_0314", "GTEx Human Ovary (Mar14) RPKM Log2" ], [ + "521", "GTEx_Ovary_0414", "GTEx Human Ovary (Apr14) RPKM" ] ], "Pancreas mRNA": [ [ + "572", "GTEx_log2_Pancr_0314", "GTEx Human Pancreas (Mar14) RPKM Log2" ], [ + "522", "GTEx_Pancr_0414", "GTEx Human Pancreas (Apr14) RPKM" ] ], "Pituitary Gland mRNA": [ [ + "573", "GTEx_log2_Pitui_0314", "GTEx Human Pituitary (Mar14) RPKM Log2" ], [ + "523", "GTEx_Pitui_0414", "GTEx Human Pituitary (Apr14) RPKM" ] ], "Prostate mRNA": [ [ + "574", "GTEx_log2_Prost_0314", "GTEx Human Prostate (Mar14) RPKM Log2" ], [ + "524", "GTEx_Prost_0414", "GTEx Human Prostate (Apr14) RPKM" ] ], "Putamen mRNA": [ [ + "575", "GTEx_log2_Putam_0314", "GTEx Human Putamen (Mar14) RPKM Log2" ], [ + "525", "GTEx_Putam_0414", "GTEx Human Putamen (Apr14) RPKM" ] ], "Skin - Not Sun Exposed (Suprapubic) mRNA": [ [ + "576", "GTEx_log2_SkinN_0314", "GTEx Human Skin-Not Sun Exposed (Suprapubic) (Mar14) RPKM Log2" ], [ + "526", "GTEx_SkinN_0414", "GTEx Human Skin-Not Sun Exposed (Suprapubic) (Apr14) RPKM" ] ], "Skin - Sun Exposed (Lower leg) mRNA": [ [ + "577", "GTEx_log2_SkinE_0314", "GTEx Human Skin-Sun Exposed (Lower leg) (Mar14) RPKM Log2" ], [ + "527", "GTEx_SkinE_0414", "GTEx Human Skin-Sun Exposed (Lower leg) (Apr14) RPKM" ] ], "Spinal Cord mRNA": [ [ + "578", "GTEx_log2_Spina_0314", "GTEx Human Spinal Cord (Mar14) RPKM Log2" ], [ + "528", "GTEx_Spina_0414", "GTEx Human Spinal Cord (Apr14) RPKM" ] ], "Stomach mRNA": [ [ + "579", "GTEx_log2_Stoma_0314", "GTEx Human Stomach (Mar14) RPKM Log2" ], [ + "529", "GTEx_Stoma_0414", "GTEx Human Stomach (Apr14) RPKM" ] ], "Subcutaneous mRNA": [ [ + "580", "GTEx_log2_Subcu_0314", "GTEx Human Subcutaneous (Mar14) RPKM Log2" ], [ + "530", "GTEx_Subcu_0414", "GTEx Human Subcutaneous (Apr14) RPKM" ] ], "Substantia Nigra mRNA": [ [ + "581", "GTEx_log2_Subst_0314", "GTEx Human Substantia Nigra (Mar14) RPKM Log2" ], [ + "531", "GTEx_Subst_0414", "GTEx Human Substantia Nigra (Apr14) RPKM" ] ], "Testis mRNA": [ [ + "582", "GTEx_log2_Testi_0314", "GTEx Human Testis (Mar14) RPKM Log2" ], [ + "532", "GTEx_Testi_0414", "GTEx Human Testis (Apr14) RPKM" ] ], "Thyroid mRNA": [ [ + "583", "GTEx_log2_Thyro_0314", "GTEx Human Thyroid (Mar14) RPKM Log2" ], [ + "533", "GTEx_Thyro_0414", "GTEx Human Thyroid (Apr14) RPKM" ] ], "Tibial mRNA": [ [ + "584", "GTEx_log2_Tibial_0314", "GTEx Human Tibial (Mar14) RPKM Log2" ], [ + "534", "GTEx_Tibia_0414", "GTEx Human Tibial (Apr14) RPKM" ] ], "Uterus mRNA": [ [ + "585", "GTEx_log2_Uterus_0314", "GTEx Human Uterus (Mar14) RPKM Log2" ], [ + "535", "GTEx_Uteru_0414", "GTEx Human Uterus (Apr14) RPKM" ] ], "Vagina mRNA": [ [ + "586", "GTEx_log2_Vagin_0314", "GTEx Human Vagina (Mar14) RPKM Log2" ], [ + "536", "GTEx_Vagin_0414", "GTEx Human Vagina (Apr14) RPKM" ] ], "Visceral mRNA": [ [ + "587", "GTEx_log2_Visce_0314", "GTEx Human Visceral (Mar14) RPKM Log2" ], [ + "537", "GTEx_Visce_0414", "GTEx Human Visceral (Apr14) RPKM" ] ], "Whole Blood mRNA": [ [ + "588", "GTEx_log2_WholeB_0314", "GTEx Human Whole Blood (Mar14) RPKM Log2" ], [ + "538", "GTEx_Whole_0414", "GTEx Human Whole Blood (Apr14) RPKM" ] @@ -746,54 +873,66 @@ "HB": { "Cerebellum mRNA": [ [ + "326", "HBTRC-MLC_0611", "HBTRC-MLC Human Cerebellum Agilent (Jun11) mlratio" ], [ + "361", "HBTRC-MLC_N_0611", "HBTRC-MLC Human Cerebellum Agilent Normal (Jun11) mlratio" ], [ + "362", "HBTRC-MLC_AD_0611", "HBTRC-MLC Human Cerebellum Agilent AD (Jun11) mlratio" ], [ + "363", "HBTRC-MLC_HD_0611", "HBTRC-MLC Human Cerebellum Agilent HD (Jun11) mlratio" ] ], "Prefrontal Cortex mRNA": [ [ + "328", "HBTRC-MLPFC_0611", "HBTRC-MLC Human Prefrontal Cortex Agilent (Jun11) mlratio" ], [ + "367", "HBTRC-MLPFC_N_0611", "HBTRC-MLC Human Prefrontal Cortex Agilent Normal (Jun11) mlratio" ], [ + "368", "HBTRC-MLPFC_AD_0611", "HBTRC-MLC Human Prefrontal Cortex Agilent AD (Jun11) mlratio" ], [ + "369", "HBTRC-MLPFC_HD_0611", "HBTRC-MLC Human Prefrontal Cortex Agilent HD (Jun11) mlratio" ] ], "Primary Visual Cortex mRNA": [ [ + "327", "HBTRC-MLVC_0611", "HBTRC-MLC Human Visual Cortex Agilent (Jun11) mlratio" ], [ + "364", "HBTRC-MLVC_N_0611", "HBTRC-MLC Human Visual Cortex Agilent Normal (Jun11) mlratio" ], [ + "365", "HBTRC-MLVC_AD_0611", "HBTRC-MLC Human Visual Cortex Agilent AD (Jun11) mlratio" ], [ + "366", "HBTRC-MLVC_HD_0611", "HBTRC-MLC Human Visual Cortex Agilent HD (Jun11) mlratio" ] @@ -810,14 +949,17 @@ "HLC": { "Liver mRNA": [ [ + "320", "HLC_0311", "GSE9588 Human Liver Normal (Mar11) Both Sexes" ], [ + "383", "HLCM_0311", "GSE9588 Human Liver Normal (Mar11) Males" ], [ + "384", "HLCF_0311", "GSE9588 Human Liver Normal (Mar11) Females" ] @@ -832,18 +974,22 @@ "HLT": { "Lung mRNA": [ [ + "455", "GSE23546HLT0613", "Super Series GSE23546 Whole-Genome GXD Non-Tumorous Human Lung Tissues Affy HuRSTA array (Jun11) RMA" ], [ + "452", "luCA_GSE23352HLT0613", "UL/GSE23352 Whole-Genome GXD Non-Tumorous Human Lung Tissues Affy HuRSTA (Jun11) RMA" ], [ + "453", "UBC-GSE23529HLT0613", "UBC/GSE23529 Whole-Genome GXD Non-Tumorous Human Lung Tissues Affy HuRSTA array (Jun11) RMA" ], [ + "454", "GRNG-GSE23545HLT0613", "GRNG/GSE23545 Whole-Genome GXD Non-Tumorous Human Lung Tissues Affy HuRSTA array (Jun11) RMA" ] @@ -852,96 +998,112 @@ "HSB": { "Amygdala mRNA": [ [ + "330", "KIN_YSM_AMY_0711", "GN330 Human Amygdala Affy Hu-Exon 1.0 ST (Jul11) Quantile" ] ], "Cerebellar Cortex mRNA": [ [ + "331", "KIN_YSM_CBC_0711", "Human Cerebellar Cortex Affy Hu-Exon 1.0 ST (Jul11) Quantile" ] ], "Dorsolateral Prefrontal Cortex mRNA": [ [ + "333", "KIN_YSM_DFC_0711", "Human Dorsolateral Prefrontal Cortex Affy Hu-Exon 1.0 ST (Jul11) Quantile" ] ], "Hippocampus mRNA": [ [ + "337", "KIN_YSM_HIP_0711", "Human Hippocampus Affy Hu-Exon 1.0 ST (Jul11) Quantile" ] ], "Inferior Temporal Cortex mRNA": [ [ + "339", "KIN_YSM_ITC_0711", "Human Inferior Temporal Cortex Affy Hu-Exon 1.0 ST (Jul11) Quantile" ] ], "Medial Prefrontal Cortex mRNA": [ [ + "343", "KIN_YSM_MFC_0711", "Human Medial Prefrontal Cortex Affy Hu-Exon 1.0 ST (Jul11) Quantile" ] ], "Mediodorsal Nucleus of Thalamus mRNA": [ [ + "342", "KIN_YSM_MD_0711", "Human Mediodorsal Nucleus of Thalamus Affy Hu-Exon 1.0 ST (Jul11) Quantile" ] ], "Orbital Prefrontal Cortex mRNA": [ [ + "347", "KIN_YSM_OFC_0711", "Human Orbital Prefrontal Cortex Affy Hu-Exon 1.0 ST (Jul11) Quantile" ] ], "Posterior Inferior Parietal Cortex mRNA": [ [ + "338", "KIN_YSM_IPC_0711", "Human Posterior Inferior Parietal Cortex Affy Hu-Exon 1.0 ST (Jul11) Quantile" ] ], "Posterior Superior Temporal Cortex mRNA": [ [ + "350", "KIN_YSM_STC_0711", "Human Posterior Superior Temporal Cortex Affy Hu-Exon 1.0 ST (Jul11) Quantile" ] ], "Primary Auditory (A1) Cortex mRNA": [ [ + "329", "KIN_YSM_A1C_0711", "Human Primary Auditory (A1) Cortex Affy Hu-Exon 1.0 ST (Jul11) Quantile" ] ], "Primary Motor (M1) Cortex mRNA": [ [ + "341", "KIN_YSM_M1C_0711", "Human Primary Motor (M1) Cortex Affy Hu-Exon 1.0 ST (Jul11) Quantile" ] ], "Primary Somatosensory (S1) Cortex mRNA": [ [ + "349", "KIN_YSM_S1C_0711", "Human Primary Somatosensory (S1) Cortex Affy Hu-Exon 1.0 ST (Jul11) Quantile" ] ], "Primary Visual Cortex mRNA": [ [ + "354", "KIN_YSM_V1C_0711", "Human Primary Visual Cortex Affy Hu-Exon 1.0 ST (Jul11) Quantile" ] ], "Striatum mRNA": [ [ + "351", "KIN_YSM_STR_0711", "Human Striatum Affy Hu-Exon 1.0 ST (Jul11) Quantile" ] ], "Ventrolateral Prefrontal Cortex mRNA": [ [ + "356", "KIN_YSM_VFC_0711", "Human Ventrolateral Prefrontal Cortex Affy Hu-Exon 1.0 ST (Jul11) Quantile" ] @@ -952,30 +1114,35 @@ "Macaca-fasicularis": { "Amygdala mRNA": [ [ + "255", "INIA_MacFas_AMG_RMA_0110", "INIA Macaca fasicularis Amygdala (Jan10) RMA **" ] ], "Brain mRNA": [ [ + "251", "INIA_MacFas_brain_RMA_0110", "INIA Macaca fasicularis Brain (Jan10) RMA **" ] ], "Hippocampus mRNA": [ [ + "254", "INIA_MacFas_Hc_RMA_0110", "INIA Macaca fasicularis Hippocampus (Jan10) RMA **" ] ], "Nucleus Accumbens mRNA": [ [ + "253", "INIA_MacFas_Ac_RMA_0110", "INIA Macaca fasicularis Nucleus Accumbens (Jan10) RMA **" ] ], "Prefrontal Cortex mRNA": [ [ + "252", "INIA_MacFas_Pf_RMA_0110", "INIA Macaca fasicularis Prefrontal Cortex (Jan10) RMA **" ] @@ -992,28 +1159,33 @@ ], "Mammary Tumors mRNA": [ [ + "224", "NCI_Agil_Mam_Tum_RMA_0409", "NCI Mammary LMT miRNA v2 (Apr09) RMA" ], [ - "MA_M_0704_M", - "NCI Mammary mRNA M430 (July04) MAS5" - ], - [ + "37", "MA_M_0704_R", "NCI Mammary mRNA M430 (July04) RMA" + ], + [ + "36", + "MA_M_0704_M", + "NCI Mammary mRNA M430 (July04) MAS5" ] ] }, "AXBXA": { "Bone Femur mRNA": [ [ + "411", "UCLA_AXB/BXA_Femur_0113_RSN", "UCLA GSE27483 AXB/BXA Bone Femur ILM Mouse WG-6 v1, v1.1 (Jan13) RSN" ] ], "Eye mRNA": [ [ + "210", "Eye_AXBXA_1008_RankInv", "Eye AXBXA Illumina V6.2(Oct08) RankInv Beta" ] @@ -1026,12 +1198,14 @@ ], "Heart mRNA": [ [ + "421", "IRCM_AXBXA_HRI0213", "IRCM AXB/BXA Mouse Heart ILM MouseRef-8 v2.0 (Feb13) RankInv" ] ], "Liver mRNA": [ [ + "352", "GSE16780AB_UCLA_ML0911", "GSE16780 UCLA Mouse AXB/BXA Liver Affy HT M430A (Sep11) RMA" ] @@ -1052,12 +1226,14 @@ ], "Liver mRNA": [ [ - "LVF2_M_0704_M", - "(B6 x BTBR)F2-ob/ob Liver mRNA M430 (Jul04) MAS5" - ], - [ + "39", "LVF2_M_0704_R", "(B6 x BTBR)F2-ob/ob Liver mRNA M430 (Jul04) RMA" + ], + [ + "38", + "LVF2_M_0704_M", + "(B6 x BTBR)F2-ob/ob Liver mRNA M430 (Jul04) MAS5" ] ], "Phenotypes": [ @@ -1070,28 +1246,34 @@ "B6D2F2": { "Brain mRNA": [ [ + "76", + "BRF2_M_0805_M", + "OHSU/VA B6D2F2 Brain mRNA M430 (Aug05) MAS5" + ], + [ + "78", "BRF2_M_0805_P", "OHSU/VA B6D2F2 Brain mRNA M430 (Aug05) PDNN" ], [ + "77", "BRF2_M_0805_R", "OHSU/VA B6D2F2 Brain mRNA M430 (Aug05) RMA" ], [ - "BRF2_M_0805_M", - "OHSU/VA B6D2F2 Brain mRNA M430 (Aug05) MAS5" - ], - [ + "33", "BRF2_M_0304_P", "OHSU/VA B6D2F2 Brain mRNA M430A (Mar04) PDNN" ], [ - "BRF2_M_0304_M", - "OHSU/VA B6D2F2 Brain mRNA M430A (Mar04) MAS5" - ], - [ + "32", "BRF2_M_0304_R", "OHSU/VA B6D2F2 Brain mRNA M430A (Mar04) RMA" + ], + [ + "31", + "BRF2_M_0304_M", + "OHSU/VA B6D2F2 Brain mRNA M430A (Mar04) MAS5" ] ], "Genotypes": [ @@ -1110,18 +1292,22 @@ ], "Muscle mRNA": [ [ + "134", "PSU-B6D2F2_0812", "PSU B6D2F2 Muscle Affy Mouse Genome 430 2.0 (Aug12) RMA **" ], [ + "404", "PSU-B6D2F2_F0812", "PSU B6D2F2 Muscle Affy Mouse Genome 430 2.0 (Aug12) RMA Females **" ], [ + "405", "PSU-B6D2F2_M0812", "PSU B6D2F2 Muscle Affy Mouse Genome 430 2.0 (Aug12) RMA Males **" ], [ + "406", "PSU-B6D2F2_M2000812", "PSU B6D2F2 Muscle Affy Mouse Genome 430 2.0 (Aug12) RMA Males Aged 200 **" ] @@ -1130,6 +1316,7 @@ "B6D2RI": { "Hippocampus mRNA": [ [ + "391", "UTHSC_B6D2RI_H_0912", "UTHSC B6D2RI Aged Hippocampus Affy Mouse Gene 1.0 ST (Sep12) RMA **" ] @@ -1144,6 +1331,7 @@ ], "Liver mRNA": [ [ + "169", "UCLA_BDF2_LIVER_1999", "UCLA BDF2 Liver (1999) mlratio" ] @@ -1158,44 +1346,53 @@ ], "Striatum mRNA": [ [ + "84", + "SA_M2_0905_R", + "OHSU/VA B6D2F2 Striatum M430v2 (Sep05) RMA" + ], + [ + "83", "SA_M2_0905_M", "OHSU/VA B6D2F2 Striatum M430v2 (Sep05) MAS5" ], [ + "85", "SA_M2_0905_P", "OHSU/VA B6D2F2 Striatum M430v2 (Sep05) PDNN" - ], - [ - "SA_M2_0905_R", - "OHSU/VA B6D2F2 Striatum M430v2 (Sep05) RMA" ] ] }, "BHF2": { "Adipose mRNA": [ [ - "UCLA_BHF2_ADIPOSE_FEMALE", - "UCLA BHF2 Adipose Female mlratio" - ], - [ + "196", "UCLA_BHF2_ADIPOSE_MALE", "UCLA BHF2 Adipose Male mlratio" ], [ + "197", + "UCLA_BHF2_ADIPOSE_FEMALE", + "UCLA BHF2 Adipose Female mlratio" + ], + [ + "165", "UCLA_BHF2_ADIPOSE_0605", "UCLA BHF2 Adipose (June05) mlratio" ] ], "Brain mRNA": [ [ - "UCLA_BHF2_BRAIN_FEMALE", - "UCLA BHF2 Brain Female mlratio" - ], - [ + "198", "UCLA_BHF2_BRAIN_MALE", "UCLA BHF2 Brain Male mlratio" ], [ + "199", + "UCLA_BHF2_BRAIN_FEMALE", + "UCLA BHF2 Brain Female mlratio" + ], + [ + "166", "UCLA_BHF2_BRAIN_0605", "UCLA BHF2 Brain (June05) mlratio" ] @@ -1208,28 +1405,34 @@ ], "Liver mRNA": [ [ - "UCLA_BHF2_LIVER_FEMALE", - "UCLA BHF2 Liver Female mlratio" - ], - [ + "200", "UCLA_BHF2_LIVER_MALE", "UCLA BHF2 Liver Male mlratio" ], [ + "201", + "UCLA_BHF2_LIVER_FEMALE", + "UCLA BHF2 Liver Female mlratio" + ], + [ + "167", "UCLA_BHF2_LIVER_0605", "UCLA BHF2 Liver (June05) mlratio" ] ], "Muscle mRNA": [ [ - "UCLA_BHF2_MUSCLE_FEMALE", - "UCLA BHF2 Muscle Female mlratio **" - ], - [ + "202", "UCLA_BHF2_MUSCLE_MALE", "UCLA BHF2 Muscle Male mlratio **" ], [ + "203", + "UCLA_BHF2_MUSCLE_FEMALE", + "UCLA BHF2 Muscle Female mlratio **" + ], + [ + "168", "UCLA_BHF2_MUSCLE_0605", "UCLA BHF2 Muscle (June05) mlratio **" ] @@ -1238,28 +1441,34 @@ "BHHBF2": { "Adipose mRNA": [ [ + "174", "UCLA_BHHBF2_ADIPOSE_2005", "UCLA BHHBF2 Adipose (2005) mlratio" ], [ + "180", "UCLA_BHHBF2_ADIPOSE_MALE", "UCLA BHHBF2 Adipose Male Only" ], [ + "181", "UCLA_BHHBF2_ADIPOSE_FEMALE", "UCLA BHHBF2 Adipose Female Only" ] ], "Brain mRNA": [ [ + "175", "UCLA_BHHBF2_BRAIN_2005", "UCLA BHHBF2 Brain (2005) mlratio" ], [ + "182", "UCLA_BHHBF2_BRAIN_MALE", "UCLA BHHBF2 Brain Male Only" ], [ + "183", "UCLA_BHHBF2_BRAIN_FEMALE", "UCLA BHHBF2 Brain Female Only" ] @@ -1272,28 +1481,34 @@ ], "Liver mRNA": [ [ + "176", "UCLA_BHHBF2_LIVER_2005", "UCLA BHHBF2 Liver (2005) mlratio" ], [ + "184", "UCLA_BHHBF2_LIVER_MALE", "UCLA BHHBF2 Liver Male Only" ], [ + "185", "UCLA_BHHBF2_LIVER_FEMALE", "UCLA BHHBF2 Liver Female Only" ] ], "Muscle mRNA": [ [ + "177", "UCLA_BHHBF2_MUSCLE_2005", "UCLA BHHBF2 Muscle (2005) mlratio" ], [ + "186", "UCLA_BHHBF2_MUSCLE_MALE", "UCLA BHHBF2 Muscle Male Only" ], [ + "187", "UCLA_BHHBF2_MUSCLE_FEMALE", "UCLA BHHBF2 Muscle Female Only" ] @@ -1302,250 +1517,308 @@ "BXD": { "Adipose mRNA": [ [ + "469", "EPFLADGL1013", "EPFL/LISP BXD CD Brown Adipose Affy Mouse Gene 2.0 ST Gene Level (Oct13) RMA" ], [ + "470", "EPFLADEL1013", "EPFL/LISP BXD CD Brown Adipose Affy Mouse Gene 2.0 ST Exon Level (Oct13) RMA" ] ], "Adrenal Gland mRNA": [ [ + "388", "INIA_Adrenal_RMA_0612", "INIA Adrenal Affy MoGene 1.0ST (Jun12) RMA" ], [ + "426", "INIA_Adrenal_RMA_F_0612", "INIA Adrenal Affy MoGene 1.0ST (Jun12) RMA Females" ], [ + "425", "INIA_Adrenal_RMA_M_0612", "INIA Adrenal Affy MoGene 1.0ST (Jun12) RMA Males" ], [ + "334", "INIA_Adrenal_RMA_Ex_0612", "INIA Adrenal Affy MoGene 1.0ST (Jun12) RMA Exon Level" ] ], "Amygdala mRNA": [ [ + "323", "INIA_AmgCoh_0311", "INIA Amygdala Cohort Affy MoGene 1.0 ST (Mar11) RMA" ], [ + "280", "INIA_Amg_BLA_RMA_1110", "INIA Amygdala Affy MoGene 1.0 ST (Nov10) RMA" ], [ + "316", "INIA_Amg_BLA_RMA_M_1110", "INIA Amygdala Affy MoGene 1.0 ST (Nov10) RMA Male" ], [ + "315", "INIA_Amg_BLA_RMA_F_1110", "INIA Amygdala Affy MoGene 1.0 ST (Nov10) RMA Female" ], [ + "158", "INIA_Amg_BLA_Ex-RMA_1110", "INIA Amygdala Exon Affy MoGene 1.0 ST (Nov10) RMA" ] ], "Bone Femur mRNA": [ [ + "410", "UCLA_BXD_Femur_0113_RSN", "UCLA GSE27483 BXD Bone Femur ILM Mouse WG-6 v1, v1.1 (Jan13) RSN" ], [ + "414", "UCLA_BXD-on_Femur_0113_RSN", "UCLA GSE27483 BXD Only Bone Femur ILM Mouse WG-6 v2.0 (Jan13) RSN" ], [ + "464", "UTHSCWGU88BFMG1013", "UTHSC WGU88 Male Bone Femur AFFY Mouse Gene ST 2.0 Gene Level (Oct13) RMA **" ], [ + "465", "UTHSCWGU88BFMEx1013", "UTHSC WGU88 Male Bone Femur AFFY Mouse Gene ST 2.0 Exon Level (Oct13) RMA **" ], [ + "466", "UTHSCWGU88BFFG1013", "UTHSC WGU88 Female Bone Femur AFFY Mouse Gene ST 2.0 Gene Level (Oct13) RMA **" ], [ + "467", "UTHSCWGU88BFFEx1013", "UTHSC WGU88 Female Bone Femur AFFY Mouse Gene ST 2.0 Exon Level (Oct13) RMA **" ] ], "Brain mRNA": [ [ + "589", "UTHSC_BXD_WB_RNASeqtrim1112", "UTHSC Mouse BXD Whole Brain RNA Sequence (Nov12) RPKM Trimmed 2.0" ], [ - "UTHSC_BXD_WB_RNASeqtrim1_1112", - "UTHSC Mouse BXD Whole Brain RNA Sequence (Nov12) RPKM Trimmed 1.0" - ], - [ + "164", "UTHSC_BXD_WB_RNASeq1112", "UTHSC Mouse BXD Whole Brain RNA Sequence (Nov12) RPKM Untrimmed" ], [ + "590", + "UTHSC_BXD_WB_RNASeqtrim1_1112", + "UTHSC Mouse BXD Whole Brain RNA Sequence (Nov12) RPKM Trimmed 1.0" + ], + [ + "394", "UTHSC_BXD_WB_RNASeqEx1112", "UTHSC Mouse BXD Whole Brain RNA Sequence Exon Level (Nov12) RPKM" ], [ + "123", "BR_M2_1106_R", "UCHSC BXD Whole Brain M430 2.0 (Nov06) RMA" ], [ + "95", "BR_U_1105_P", "UTHSC Brain mRNA U74Av2 (Nov05) PDNN" ], [ - "BR_U_0805_P", - "UTHSC Brain mRNA U74Av2 (Aug05) PDNN" - ], - [ + "80", "BR_U_0805_M", "UTHSC Brain mRNA U74Av2 (Aug05) MAS5" ], [ + "82", "BR_U_0805_R", "UTHSC Brain mRNA U74Av2 (Aug05) RMA" ], [ + "81", + "BR_U_0805_P", + "UTHSC Brain mRNA U74Av2 (Aug05) PDNN" + ], + [ + "42", "CB_M_0204_P", "INIA Brain mRNA M430 (Feb04) PDNN" ] ], "Cartilage mRNA": [ [ + "208", "UCLA_BXDBXH_CARTILAGE_V2", "UCLA BXD and BXH Cartilage v2" ], [ + "204", "UCLA_BXDBXH_CARTILAGE", "UCLA BXD and BXH Cartilage" ], [ + "178", "UCLA_BXD_CARTILAGE", "UCLA BXD Cartilage" ] ], "Cerebellum mRNA": [ [ + "46", "CB_M_1004_R", "SJUT Cerebellum mRNA M430 (Oct04) RMA" ], [ + "45", "CB_M_1004_P", "SJUT Cerebellum mRNA M430 (Oct04) PDNN" ], [ + "44", "CB_M_1004_M", "SJUT Cerebellum mRNA M430 (Oct04) MAS5" ], [ + "9", "CB_M_1003_M", "SJUT Cerebellum mRNA M430 (Oct03) MAS5" ], [ + "436", "CMMTUBCBXDCerILM0513", "UBC/CMMT BXD Cerebellum All Ages Combined ILM Mouse WG-6 v2.0 (May13) RankInv **" ], [ + "441", "CMMTUBCBXDG12CerILM0513", "UBC/CMMT BXD E12 Cerebellum ILM Mouse WG-6 v2.0 (May13) RankInv **" ], [ + "442", "CMMTUBCBXDG15CerILM0513", "UBC/CMMT BXD E15 Cerebellum ILM Mouse WG-6 v2.0 (May13) RankInv **" ], [ + "443", "CMMTUBCBXDG18CerILM0513", "UBC/CMMT BXD E18 Cerebellum ILM Mouse WG-6 v2.0 (May13) RankInv **" ], [ + "437", "CMMTUBCBXDP00CerILM0513", "UBC/CMMT BXD P0 Cerebellum ILM Mouse WG-6 v2.0 (May13) RankInv **" ], [ + "438", "CMMTUBCBXDP03CerILM0513", "UBC/CMMT BXD P3 Cerebellum ILM Mouse WG-6 v2.0 (May13) RankInv **" ], [ + "439", "CMMTUBCBXDP06CerILM0513", "UBC/CMMT BXD P6 Cerebellum ILM Mouse WG-6 v2.0 (May13) RankInv **" ], [ + "440", "CMMTUBCBXDP09CerILM0513", "UBC/CMMT BXD P9 Cerebellum ILM Mouse WG-6 v2.0 (May13) RankInv **" ], [ + "415", "GenEx_BXD_CerebEt_RMA_0213", "GenEx BXD EtOH Cerebellum Affy M430 2.0 (Feb13) RMA Both Sexes **" ], [ + "416", "GenEx_BXD_CerebEt_RMA_F_0213", "GenEx BXD EtOH Cerebellum Affy M430 2.0 (Feb13) RMA Females **" ], [ + "417", "GenEx_BXD_CerebEt_RMA_M_0213", "GenEx BXD EtOH Cerebellum Affy M430 2.0 (Feb13) RMA Males **" ], [ + "418", "GenEx_BXD_CerebSal_RMA_0213", "GenEx BXD Sal Cerebellum Affy M430 2.0 (Feb13) RMA Both Sexes **" ], [ + "419", "GenEx_BXD_CerebSal_RMA_F_0213", "GenEx BXD Sal Cerebellum Affy M430 2.0 (Feb13) RMA Females **" ], [ + "420", "GenEx_BXD_CerebSal_RMA_M_0213", "GenEx BXD Sal Cerebellum Affy M430 2.0 (Feb13) RMA Males **" ] ], "Eye mRNA": [ [ + "207", "Eye_M2_0908_R", "Eye M430v2 (Sep08) RMA" ], [ + "10", "gn10", "Eye M430v2 No Mutant/Mutant (Aug12) RMA **" ], [ + "261", "Eye_M2_0908_R_NB", "Eye M430v2 Mutant Gpnmb (Sep08) RMA **" ], [ + "262", "Eye_M2_0908_R_ND", "Eye M430v2 WT Gpnmb (Sep08) RMA **" ], [ + "278", + "Eye_M2_0908_R_MT", + "Eye M430v2 Mutant Tyrp1 (Sep08) RMA **" + ], + [ + "382", "Eye_M2_0908_WTWT", "Eye M430v2 WT WT (Sep08) RMA **" ], [ + "279", "Eye_M2_0908_R_WT", "Eye M430v2 WT Tyrp1 (Sep08) RMA **" ], [ - "Eye_M2_0908_R_MT", - "Eye M430v2 Mutant Tyrp1 (Sep08) RMA **" - ], - [ + "400", "DBA2J-ONH-1212", "Howell et al. 2011, DBA/2J Glaucoma Optic Nerve Head M430 2.0 (Dec12) RMA" ], [ + "360", "BXD_GLA_0911", "Howell et al. 2011, DBA/2J Glaucoma Retina M430 2.0 (Sep11) RMA" ] ], "Gastrointestinal mRNA": [ [ + "539", "UTHSC_GutGL_0414", "UTHSC Mouse BXD Gastrointestinal Affy MoGene 1.0 ST Gene Level (Apr14) RMA **" ] @@ -1558,408 +1831,502 @@ ], "Heart mRNA": [ [ + "485", "EPFL-LISPBXDHeCD0114", "EPFL/LISP BXD CD Heart Affy Mouse Gene 2.0 ST Gene Level (Jan14) RMA **" ], [ + "486", "EPFL-LISPBXDHeHFD0114", "EPFL/LISP BXD HFD Heart Affy Mouse Gene 2.0 ST Gene Level (Jan14) RMA **" ], [ + "487", "EPFL-LISPBXDHeCDEx0114", "EPFL/LISP BXD CD Heart Affy Mouse Gene 2.0 ST Exon Level (Jan14) RMA **" ], [ + "488", "EPFL-LISPBXDHeHFDEx0114", "EPFL/LISP BXD HFD Heart Affy Mouse Gene 2.0 ST Exon Level (Jan14) RMA **" ] ], "Hematopoietic Cells mRNA": [ [ + "149", "UMCG_0907_HemaStem_ori", "UMCG Stem Cells ILM6v1.1 (Apr09) original" ], [ + "145", "UMCG_0907_HemaStem", "UMCG Stem Cells ILM6v1.1 (Apr09) transformed" ], [ + "151", "UMCG_0907_Pro_ori", "UMCG Progenitor Cells ILM6v1.1 (Apr09) original" ], [ + "147", "UMCG_0907_Pro", "UMCG Progenitor Cells ILM6v1.1 (Apr09) transformed" ], [ + "150", "UMCG_0907_Eryth_ori", "UMCG Erythroid Cells ILM6v1.1 (Apr09) original" ], [ + "146", "UMCG_0907_Eryth", "UMCG Erythroid Cells ILM6v1.1 (Apr09) transformed" ], [ + "148", "UMCG_0907_Myeloid_ori", "UMCG Myeloid Cells ILM6v1.1 (Apr09) original" ], [ + "144", "UMCG_0907_Myeloid", "UMCG Myeloid Cells ILM6v1.1 (Apr09) transformed" ], [ + "7", "HC_U_0304_R", "GNF Stem Cells U74Av2 (Mar04) RMA" ] ], "Hippocampus mRNA": [ [ + "112", "HC_M2_0606_P", "Hippocampus Consortium M430v2 (Jun06) PDNN" ], [ + "111", "HC_M2_0606_M", "Hippocampus Consortium M430v2 (Jun06) MAS5" ], [ + "110", "HC_M2_0606_R", "Hippocampus Consortium M430v2 (Jun06) RMA" ], [ + "291", "UT_ILM_BXD_hipp_5T_1112", "UTHSC Hippocampus Illumina v6.1 All Combined (Nov12) RankInv" ], [ + "292", "UT_ILM_BXD_hipp_NON_1112", "UTHSC Hippocampus Illumina v6.1 NON (Nov12) RankInv" ], [ + "293", "UT_ILM_BXD_hipp_NOS_1112", "UTHSC Hippocampus Illumina v6.1 NOS (Nov12) RankInv" ], [ + "294", "UT_ILM_BXD_hipp_NOE_1112", "UTHSC Hippocampus Illumina v6.1 NOE (Nov12) RankInv" ], [ + "295", "UT_ILM_BXD_hipp_RSS_1112", "UTHSC Hippocampus Illumina v6.1 RSS (Nov12) RankInv" ], [ - "UT_ILM_BXD_hipp_RSE_1112", - "UTHSC Hippocampus Illumina v6.1 RSE (Nov12) RankInv" - ], - [ + "206", "UMUTAffyExon_0209_RMA", "UMUTAffy Hippocampus Exon (Feb09) RMA" ], [ + "296", + "UT_ILM_BXD_hipp_RSE_1112", + "UTHSC Hippocampus Illumina v6.1 RSE (Nov12) RankInv" + ], + [ + "242", "UT_ILM_BXD_hipp_NON_0909", "UTHSC Hippocampus Illumina v6.1 NON (Sep09) RankInv" ], [ + "243", "UT_ILM_BXD_hipp_NOS_0909", "UTHSC Hippocampus Illumina v6.1 NOS (Sep09) RankInv" ], [ + "246", "UT_ILM_BXD_hipp_NOE_0909", "UTHSC Hippocampus Illumina v6.1 NOE (Sep09) RankInv" ], [ + "244", "UT_ILM_BXD_hipp_RSS_0909", "UTHSC Hippocampus Illumina v6.1 RSS (Sep09) RankInv" ], [ + "245", "UT_ILM_BXD_hipp_RSE_0909", "UTHSC Hippocampus Illumina v6.1 RSE (Sep09) RankInv" ], [ + "393", "UTHSC_BXD_HArev3_0912", "UTHSC BXD Aged Hippocampus rev3 Affy Mouse Gene 1.0 ST (Sep12) RMA **" ], [ + "392", "UTHSC_BXD_H_0912", "UTHSC BXD Aged Hippocampus Affy Mouse Gene 1.0 ST (Sep12) RMA Exon Level **" ] ], "Hippocampus microRNA": [ [ + "491", "UTHSC_BXD_Hip_miRNASeq0214", "UTHSC BXD Hippocampus Ion Torrent microRNA (Feb14) RPKM **" ] ], "Hypothalamus mRNA": [ [ + "281", "INIA_Hyp_RMA_1110", "INIA Hypothalamus Affy MoGene 1.0 ST (Nov10)" ], [ + "318", "INIA_Hyp_M_RMA_1110", "INIA Hypothalamus Affy MoGene 1.0 ST (Nov10) Male" ], [ + "317", "INIA_Hyp_F_RMA_1110", "INIA Hypothalamus Affy MoGene 1.0 ST (Nov10) Female" ], [ + "459", "INIA_Hyp_PCA_0813_v4", "INIA Hypothalamus Affy MoGene 1.0 ST (Nov10) PCA Test v080913" ], [ + "458", "INIA_Hyp_PCA_0813_v3", "INIA Hypothalamus Affy MoGene 1.0 ST (Nov10) PCA Test v080813" ], [ + "457", "INIA_Hyp_PCA_0813_v2", "INIA Hypothalamus Affy MoGene 1.0 ST (Nov10) PCA Test v080513" ], [ + "456", "INIA_Hyp_PCA_0813", "INIA Hypothalamus Affy MoGene 1.0 ST (Nov10) PCA Test v080213" ], [ + "159", "INIA_Hyp_RMA_Ex-1110", "INIA Hypothalamus Exon Affy MoGene 1.0 ST (Nov10)" ] ], "Kidney mRNA": [ [ + "240", "MA_M2M_0706_R", "Mouse kidney M430v2 Male (Aug06) RMA" ], [ + "239", "MA_M2F_0706_R", "Mouse kidney M430v2 Female (Aug06) RMA" ], [ + "118", "MA_M2_0806_R", "Mouse kidney M430v2 Sex Balanced (Aug06) RMA" ], [ + "117", "MA_M2_0806_P", "Mouse Kidney M430v2 Sex Balanced (Aug06) PDNN" ], [ - "MA_M2_0706_R", - "Mouse Kidney M430v2 (Jul06) RMA" - ], - [ + "116", "MA_M2_0706_P", "Mouse Kidney M430v2 (Jul06) PDNN" + ], + [ + "115", + "MA_M2_0706_R", + "Mouse Kidney M430v2 (Jul06) RMA" ] ], "Leucocytes mRNA": [ [ + "218", "Illum_BXD_PBL_1108", "UWA Illumina PBL (Nov08) RSN **" ] ], "Liver Metabolome": [ [ + "474", "EPFL-LISP_LivPMetHFD1213", "EPFL/LISP BXD Liver Polar Metabolites HFD (Jun14) **" ], [ + "475", "EPFL-LISP_LivPMetCD1213", "EPFL/LISP BXD Liver Polar Metabolites CD (Jun14) **" ] ], "Liver Proteome": [ [ - "EPFLETHZBXDprotCD0514", - "EPFL/ETHZ BXD Liver, Soluble Proteins CD (May14) SWATH **" - ], - [ + "541", "EPFLETHZBXDprotHFD0514", "EPFL/ETHZ BXD Liver, Soluble Proteins HFD (May14) SWATH **" ], [ + "540", + "EPFLETHZBXDprotCD0514", + "EPFL/ETHZ BXD Liver, Soluble Proteins CD (May14) SWATH **" + ], + [ + "489", "EPFLBXDprotHFDRPN0214", "EPFL/LISP BXD Liver, Soluble Proteins HFD (Feb14) SRM **" ], [ + "490", "EPFLBXDprotCDRPN0214", "EPFL/LISP BXD Liver, Soluble Proteins CD (Feb14) SRM **" ] ], "Liver mRNA": [ [ + "373", "GSE16780_UCLA_ML0911", "GSE16780 UCLA Hybrid MDP Liver Affy HT M430A (Sep11) RMA" ], [ + "325", "SUH_Liv_RMA_0611", "SUH BXD Liver CCl4-treated Affy Mouse Gene 1.0 ST (Jun11) RMA" ], [ + "430", "EPFLMouseLiverRMA0413", "EPFL/LISP BXD CD+HFD Liver Affy Mouse Gene 1.0 ST (Apr13) RMA" ], [ + "431", "EPFLMouseLiverHFDRMA0413", "EPFL/LISP BXD HFD Liver Affy Mouse Gene 1.0 ST (Apr13) RMA" ], [ + "432", "EPFLMouseLiverCDRMA0413", "EPFL/LISP BXD CD Liver Affy Mouse Gene 1.0 ST (Apr13) RMA" ], [ + "433", "EPFLMouseLiverBothExRMA0413", "EPFL/LISP BXD CD+HFD Liver Affy Mouse Gene 1.0 ST (Apr13) RMA Exon Level **" ], [ + "256", "GenEx_BXD_liverEt_M5_0912", "GenEx BXD EtOH Liver Affy M430 2.0 (Sep12) MAS5 Both Sexes **" ], [ + "257", "GenEx_BXD_liverEt_M5M_0912", "GenEx BXD EtOH Liver Affy M430 2.0 (Sep12) MAS5 Males **" ], [ + "258", "GenEx_BXD_liverEt_M5F_0912", "GenEx BXD EtOH Liver Affy M430 2.0 (Sep12) MAS5 Females **" ], [ + "307", "GenEx_BXD_liverEt_RMA_0211", "GenEx BXD EtOH Liver Affy M430 2.0 (Feb11) RMA Both Sexes **" ], [ + "308", "GenEx_BXD_liverEt_RMA_M_0211", "GenEx BXD EtOH Liver Affy M430 2.0 (Feb11) RMA Males **" ], [ + "309", "GenEx_BXD_liverEt_RMA_F_0211", "GenEx BXD EtOH Liver Affy M430 2.0 (Feb11) RMA Females **" ], [ + "310", "GenEx_BXD_liverSal_RMA_0211", "GenEx BXD Sal Liver Affy M430 2.0 (Feb11) RMA Both Sexes **" ], [ + "311", "GenEx_BXD_liverSal_RMA_M_0211", "GenEx BXD Sal Liver Affy M430 2.0 (Feb11) RMA Males **" ], [ + "312", "GenEx_BXD_liverSal_RMA_F_0211", "GenEx BXD Sal Liver Affy M430 2.0 (Feb11) RMA Females **" ] ], "Lung mRNA": [ [ + "160", "HZI_0408_R", "HZI Lung M430v2 (Apr08) RMA" ], [ + "161", "HZI_0408_M", "HZI Lung M430v2 (Apr08) MAS5" ], [ + "468", "HZI_PR8M-F_1113", "HZI PR8M-Infected Lungs Females RNAseq (Nov13) RPKM **" ], [ + "387", "HZI_PR8M_Q_0612", "HZI PR8M-Infected Lungs Agilent4x44 (Apr12) Quantile Females **" ], [ + "424", "HZI_LTCF_0313", "HZI Lung Time Course Flu PR8M (Mar13) Schughart **" ] ], "Midbrain mRNA": [ [ + "381", "VUBXDMouseMidBrainQ0512", "VU BXD Midbrain Agilent SurePrint G3 Mouse GE (May12) Quantile" ] ], "Muscle Metabolome": [ [ + "477", "EPFL-LISP_MusPMetHFD1213", "EPFL/LISP BXD Muscle Polar Metabolites HFD (Jun14) **" ], [ + "478", "EPFL-LISP_MusPMetCD1213", "EPFL/LISP BXD Muscle Polar Metabolites CD (Jun14) **" ] ], "Muscle mRNA": [ [ + "395", "EPFLMouseMuscleRMA_Ex1112", "EPFL/LISP BXD CD+HFD Muscle Affy Mouse Gene 1.0 ST (Nov12) RMA Exon Level" ], [ + "396", "EPFLMouseMuscleHFDRMAEx1112", "EPFL/LISP BXD HFD Muscle Affy Mouse Gene 1.0 ST (Nov12) RMA Exon Level" ], [ + "397", "EPFLMouseMuscleCDRMAEx1112", "EPFL/LISP BXD CD Muscle Affy Mouse Gene 1.0 ST (Nov12) RMA Exon Level" ], [ + "378", "EPFLMouseMuscleRMA1211", "EPFL/LISP BXD CD+HFD Muscle Affy Mouse Gene 1.0 ST (Dec11) RMA" ], [ + "380", "EPFLMouseMuscleHFDRMA1211", "EPFL/LISP BXD HFD Muscle Affy Mouse Gene 1.0 ST (Dec11) RMA" ], [ + "379", "EPFLMouseMuscleCDRMA1211", "EPFL/LISP BXD CD Muscle Affy Mouse Gene 1.0 ST (Dec11) RMA" ] ], "Neocortex mRNA": [ [ - "DevNeocortex_ILM6.2P3RInv_1111", - "BIDMC/UTHSC Dev Neocortex P3 ILMv6.2 (Nov11) RankInv" - ], - [ + "375", "DevNeocortex_ILM6.2P14RInv_1111", "BIDMC/UTHSC Dev Neocortex P14 ILMv6.2 (Nov11) RankInv" ], [ + "374", + "DevNeocortex_ILM6.2P3RInv_1111", + "BIDMC/UTHSC Dev Neocortex P3 ILMv6.2 (Nov11) RankInv" + ], + [ + "284", "HQFNeoc_1210v2_RankInv", "HQF BXD Neocortex ILM6v1.1 (Dec10v2) RankInv" ], [ + "282", "HQFNeoc_1210_RankInv", "HQF BXD Neocortex ILM6v1.1 (Dec10) RankInv" ], [ + "157", "HQFNeoc_0208_RankInv", "HQF BXD Neocortex ILM6v1.1 (Feb08) RankInv" ], [ - "DevNeocortex_ILM6.2P14RInv_1110", - "BIDMC/UTHSC Dev Neocortex P14 ILMv6.2 (Nov10) RankInv" - ], - [ + "274", "DevNeocortex_ILM6.2P3RInv_1110", "BIDMC/UTHSC Dev Neocortex P3 ILMv6.2 (Nov10) RankInv" + ], + [ + "275", + "DevNeocortex_ILM6.2P14RInv_1110", + "BIDMC/UTHSC Dev Neocortex P14 ILMv6.2 (Nov10) RankInv" ] ], "Nucleus Accumbens mRNA": [ [ + "156", "VCUSalo_1007_R", "VCU BXD NAc Sal M430 2.0 (Oct07) RMA" ], [ + "155", "VCUEtOH_1007_R", "VCU BXD NAc EtOH M430 2.0 (Oct07) RMA **" ], [ + "154", "VCUSal_1007_R", "VCU BXD NAc EtOH vs Sal M430 2.0 (Oct07) Sscore **" ], [ + "409", "VCU_NAc_Air_0113_R", "VCU BXD NAc CIE Air M430 2.0 (Jan13) RMA **" ], [ + "408", "VCU_NAc_Et_0113_R", "VCU BXD NAc CIE EtOH M430 2.0 (Jan13) RMA **" ], [ + "407", "VCU_NAc_AvE_0113_Ss", "VCU BXD NAc EtOH vs CIE Air M430 2.0 (Jan13) Sscore **" ] @@ -1972,246 +2339,301 @@ ], "Pituitary Gland mRNA": [ [ + "389", "INIA_PG_RMA_0612", "INIA Pituitary Affy MoGene 1.0ST (Jun12) RMA" ], [ + "427", "INIA_Pituitary_RMA_F_0612", "INIA Pituitary Affy MoGene 1.0ST (Jun12) RMA Females" ], [ + "428", "INIA_Pituitary_RMA_M_0612", "INIA Pituitary Affy MoGene 1.0ST (Jun12) RMA Males" ], [ + "335", "INIA_PG_RMA_Ex_0612", "INIA Pituitary Affy MoGene 1.0ST (Jun12) RMA Exon Level" ] ], "Popliteal Lymph Node mRNA": [ [ + "390", "STJ_PLN_0912", "St Jude BXD Popliteal Lymph Node Affy HT MG-430 PM (Sep12) RMA **" ] ], "Prefrontal Cortex mRNA": [ [ + "135", "VCUSal_1206_R", "VCU BXD PFC Sal M430 2.0 (Dec06) RMA" ], [ + "136", "VCUEtOH_1206_R", "VCU BXD PFC EtOH M430 2.0 (Dec06) RMA" ], [ + "137", "VCUSal_1006_R", "VCU BXD PFC Et vs Sal M430 2.0 (Dec06) Sscore" ], [ + "299", "VCU_PF_AvE_0111_Ss", "VCU BXD PFC EtOH vs CIE Air M430 2.0 (Jan11) Sscore **" ], [ + "300", "VCU_PF_Et_0111_R", "VCU BXD PFC CIE EtOH M430 2.0 (Jan11) RMA **" ], [ + "301", "VCU_PF_Air_0111_R", "VCU BXD PFC CIE Air M430 2.0 (Jan11) RMA **" ] ], "Retina mRNA": [ [ + "302", "G2NEI_ILM_Retina_BXD_RI0410", "Normal HEI Retina (April 2010) RankInv" ], [ + "267", "Illum_Retina_BXD_RankInv0410", "Full HEI Retina (April 2010) RankInv" ], [ + "385", "ONCRetILM6_0412", "ONC HEI Retina (April 2012) RankInv" ], [ - "DoDTATRCRetExMoGene2_1313", - "DoD TATRC Retina Affy MoGene 2.0 ST (Dec13) RMA Exon Level" - ], - [ + "471", "DoDTATRCRetMoGene2_1313", "DoD TATRC Retina Affy MoGene 2.0 ST (Dec13) RMA" ], [ + "472", + "DoDTATRCRetExMoGene2_1313", + "DoD TATRC Retina Affy MoGene 2.0 ST (Dec13) RMA Exon Level" + ], + [ + "434", "ONCRetMoGene2_0413", "DoD TATRC Retina Affy MoGene 2.0 ST (Oct13) RMA **" ], [ + "435", "ONCRetExMoGene2_0413", "DoD TATRC Retina Affy MoGene 2.0 ST (Oct13) RMA Exon Level **" ], [ + "479", "DoDTATRCRetBLMoGene2_1213", "DoD TATRC Retina Blast Affy MoGene 2.0 ST (Dec13) RMA **" ], [ + "480", "DoDTATRCRetBLExMoGene2_1213", "DoD TATRC Retina Blast Affy MoGene 2.0 ST (Dec13) RMA Exon Level **" ], [ + "386", "B6D2ONCILM_0412", "B6D2 ONC Retina (April 2012) RankInv **" ], [ - "G2HEIONCRetILM6_0911", - "G2 HEI ONC Retina Illumina V6.2 (Sep11) RankInv **" - ], - [ + "371", "HEIONCvsCRetILM6_0911", "HEI ONC vs Control Retina Illumina V6.2 (Sep11) RankInv **" + ], + [ + "372", + "G2HEIONCRetILM6_0911", + "G2 HEI ONC Retina Illumina V6.2 (Sep11) RankInv **" ] ], "Spleen mRNA": [ [ + "283", "UTHSC_SPL_RMA_1210", "UTHSC Affy MoGene 1.0 ST Spleen (Dec10) RMA" ], [ + "286", "UTHSC_SPL_RMA_1210M", "UTHSC Affy MoGene 1.0 ST Spleen (Dec10) RMA Males" ], [ + "287", "UTHSC_SPL_RMA_1210F", "UTHSC Affy MoGene 1.0 ST Spleen (Dec10) RMA Females" ], [ + "429", "UTHSC_SPL_RMAEx_1210", "UTHSC Affy MoGene 1.0 ST Spleen (Dec10) RMA Exon Level" ], [ + "271", "UTHSC_SPL_RMA_1010", "UTHSC Affy MoGene 1.0 ST Spleen (Oct10) RMA" ], [ + "260", "UTK_BXDSpl_VST_0110", "UTK Spleen ILM6.1 (Jan10) VST" ], [ + "227", "IoP_SPL_RMA_0509", "IoP Affy MOE 430v2 Spleen (May09) RMA" ], [ + "216", "Illum_BXD_Spl_1108", "UWA Illumina Spleen (Nov08) RSN **" ] ], "Striatum mRNA": [ [ + "399", "Striatum_Exon_1212", "HQF Striatum Affy Mouse Exon 1.0ST Gene Level (Dec09) RMA" ], [ + "163", "Striatum_Exon_0209", "HQF Striatum Affy Mouse Exon 1.0ST Exon Level (Dec09) RMA" ], [ + "285", "UTHSC_Striatum_RankInv_1210", "HQF BXD Striatum ILM6.1 (Dec10v2) RankInv" ], [ + "298", "UTHSC_Str_RankInv_1210", "HQF BXD Striatum ILM6.1 (Dec10) RankInv" ], [ + "152", "UTHSC_1107_RankInv", "HQF BXD Striatum ILM6.1 (Nov07) RankInv" ], [ + "74", "SA_M2_0405_MC", "HBP Rosen Striatum M430V2 (Apr05) MAS5 Clean" ], [ + "69", "SA_M2_0405_RC", "HBP Rosen Striatum M430V2 (Apr05) RMA Clean" ], [ + "68", "SA_M2_0405_PC", "HBP Rosen Striatum M430V2 (Apr05) PDNN Clean" ], [ + "67", "SA_M2_0405_SS", "HBP Rosen Striatum M430V2 (Apr05) SScore" ], [ + "66", "SA_M2_0405_RR", "HBP Rosen Striatum M430V2 (Apr05) RMA Orig" ], [ + "376", "DevStriatum_ILM6.2P3RInv_1111", "BIDMC/UTHSC Dev Striatum P3 ILMv6.2 (Nov11) RankInv **" ], [ + "377", "DevStriatum_ILM6.2P14RInv_1111", "BIDMC/UTHSC Dev Striatum P14 ILMv6.2 (Nov11) RankInv **" ], [ - "DevStriatum_ILM6.2P3RInv_1110", - "BIDMC/UTHSC Dev Striatum P3 ILMv6.2 (Nov10) RankInv **" - ], - [ + "277", "DevStriatum_ILM6.2P14RInv_1110", "BIDMC/UTHSC Dev Striatum P14 ILMv6.2 (Nov10) RankInv **" + ], + [ + "276", + "DevStriatum_ILM6.2P3RInv_1110", + "BIDMC/UTHSC Dev Striatum P3 ILMv6.2 (Nov10) RankInv **" ] ], "T Cell (helper) mRNA": [ [ + "319", "RTHC_0211_R", "HZI Thelp M430v2 (Feb11) RMA" ] ], "T Cell (regulatory) mRNA": [ [ + "122", "RTC_1106_R", "HZI Treg M430v2 (Feb11) RMA" ] ], "Thymus mRNA": [ [ + "217", "Illum_BXD_Thy_1108", "UWA Illumina Thymus (Nov08) RSN **" ] ], "Ventral Tegmental Area mRNA": [ [ + "229", + "VCUEtOH_0609_R", + "VCU BXD VTA EtOH M430 2.0 (Jun09) RMA **" + ], + [ + "228", "VCUSal_0609_R", "VCU BXD VTA Sal M430 2.0 (Jun09) RMA **" ], [ + "230", "VCUEtvsSal_0609_R", "VCU BXD VTA Et vs Sal M430 2.0 (Jun09) Sscore **" - ], - [ - "VCUEtOH_0609_R", - "VCU BXD VTA EtOH M430 2.0 (Jun09) RMA **" ] ] }, "BXH": { "Bone Femur mRNA": [ [ + "412", "UCLA_BXH_Femur_0113_RSN", "UCLA GSE27483 BXH Bone Femur ILM Mouse WG-6 v1, v1.1 (Jan13) RSN" ] ], "Cartilage mRNA": [ [ + "209", "UCLA_BXHBXD_CARTILAGE_V2", "UCLA BXH and BXD Cartilage v2" ], [ + "205", "UCLA_BXHBXD_CARTILAGE", "UCLA BXH and BXD Cartilage" ], [ + "179", "UCLA_BXH_CARTILAGE", "UCLA BXH Cartilage" ] @@ -2224,6 +2646,7 @@ ], "Liver mRNA": [ [ + "353", "GSE16780BXH_UCLA_ML0911", "GSE16780 UCLA Mouse BXH Liver Affy HT M430A (Sep11) RMA" ] @@ -2252,28 +2675,34 @@ "CTB6F2": { "Adipose mRNA": [ [ + "170", "UCLA_CTB6B6CTF2_ADIPOSE_2005", "UCLA CTB6/B6CTF2 Adipose (2005) mlratio" ], [ + "189", "UCLA_CTB6B6CTF2_ADIPOSE_FEMALE", "UCLA CTB6B6CTF2 Adipose Female mlratio **" ], [ + "188", "UCLA_CTB6B6CTF2_ADIPOSE_MALE", "UCLA CTB6B6CTF2 Adipose Male mlratio **" ] ], "Brain mRNA": [ [ + "171", "UCLA_CTB6B6CTF2_BRAIN_2005", "UCLA CTB6/B6CTF2 Brain (2005) mlratio" ], [ + "190", "UCLA_CTB6B6CTF2_BRAIN_MALE", "UCLA CTB6/B6CTF2 Brain Males (2005) mlratio" ], [ + "191", "UCLA_CTB6B6CTF2_BRAIN_FEMALE", "UCLA CTB6/B6CTF2 Brain Females (2005) mlratio" ] @@ -2286,28 +2715,34 @@ ], "Liver mRNA": [ [ + "172", "UCLA_CTB6B6CTF2_LIVER_2005", "UCLA CTB6/B6CTF2 Liver (2005) mlratio" ], [ + "193", "UCLA_CTB6B6CTF2_LIVER_FEMALE", "UCLA CTB6B6CTF2 Liver Female mlratio **" ], [ + "192", "UCLA_CTB6B6CTF2_LIVER_MALE", "UCLA CTB6B6CTF2 Liver Male mlratio **" ] ], "Muscle mRNA": [ [ + "173", "UCLA_CTB6B6CTF2_MUSCLE_2005", "UCLA CTB6/B6CTF2 Muscle (2005) mlratio" ], [ + "195", "UCLA_CTB6B6CTF2_MUSCLE_FEMALE", "UCLA CTB6B6CTF2 Muscle Female mlratio **" ], [ + "194", "UCLA_CTB6B6CTF2_MUSCLE_MALE", "UCLA CTB6B6CTF2 Muscle Male mlratio **" ] @@ -2328,12 +2763,14 @@ ], "Hippocampus mRNA": [ [ - "HC_M2CB_1205_P", - "Hippocampus Consortium M430v2 CXB (Dec05) PDNN" - ], - [ + "100", "HC_M2CB_1205_R", "Hippocampus Consortium M430v2 CXB (Dec05) RMA" + ], + [ + "99", + "HC_M2CB_1205_P", + "Hippocampus Consortium M430v2 CXB (Dec05) PDNN" ] ], "Phenotypes": [ @@ -2344,6 +2781,7 @@ ], "Spleen mRNA": [ [ + "153", "STSPL_1107_R", "Stuart Spleen M430v2 (Nov07) RMA" ] @@ -2352,18 +2790,21 @@ "HS": { "Hippocampus mRNA": [ [ + "268", "OXUKHS_ILMHipp_RI0510", "OX UK HS ILM6v1.1 Hippocampus (May 2010) RankInv" ] ], "Liver mRNA": [ [ + "269", "OXUKHS_ILMLiver_RI0510", "OX UK HS ILM6v1.1 Liver (May 2010) RankInv" ] ], "Lung mRNA": [ [ + "270", "OXUKHS_ILMLung_RI0510", "OX UK HS ILM6v1.1 Lung (May 2010) RankInv" ] @@ -2378,6 +2819,7 @@ "HS-CC": { "Striatum mRNA": [ [ + "304", "OHSU_HS-CC_ILMStr_0211", "OHSU HS-CC Striatum ILM6v1 (Feb11) RankInv" ] @@ -2392,52 +2834,64 @@ ], "Hippocampus mRNA": [ [ + "143", "Illum_LXS_Hipp_loess0807", "Hippocampus Illumina (Aug07) LOESS" ], [ + "142", "Illum_LXS_Hipp_loess_nb0807", "Hippocampus Illumina (Aug07) LOESS_NB" ], [ + "141", "Illum_LXS_Hipp_quant0807", "Hippocampus Illumina (Aug07) QUANT" ], [ + "140", "Illum_LXS_Hipp_quant_nb0807", "Hippocampus Illumina (Aug07) QUANT_NB" ], [ + "139", "Illum_LXS_Hipp_rsn0807", "Hippocampus Illumina (Aug07) RSN" ], [ + "138", "Illum_LXS_Hipp_rsn_nb0807", "Hippocampus Illumina (Aug07) RSN_NB" ], [ + "133", "Hipp_Illumina_RankInv_0507", "Hippocampus Illumina (May07) RankInv" ], [ + "212", + "Illum_LXS_Hipp_RSE_1008", + "Hippocampus Illumina RSE (Oct08) RankInv beta" + ], + [ + "214", "Illum_LXS_Hipp_NOE_1008", "Hippocampus Illumina NOE (Oct08) RankInv beta" ], [ + "211", "Illum_LXS_Hipp_RSS_1008", "Hippocampus Illumina RSS (Oct08) RankInv beta" ], [ + "213", "Illum_LXS_Hipp_NOS_1008", "Hippocampus Illumina NOS (Oct08) RankInv beta" ], [ + "219", "Illum_LXS_Hipp_NON_1008", "Hippocampus Illumina NON (Oct08) RankInv beta" - ], - [ - "Illum_LXS_Hipp_RSE_1008", - "Hippocampus Illumina RSE (Oct08) RankInv beta" ] ], "Phenotypes": [ @@ -2448,16 +2902,19 @@ ], "Prefrontal Cortex mRNA": [ [ + "131", + "VCUEtOH_0806_R", + "VCU LXS PFC EtOH M430A 2.0 (Aug06) RMA **" + ], + [ + "130", "VCUSal_0806_R", "VCU LXS PFC Sal M430A 2.0 (Aug06) RMA" ], [ + "132", "VCUEt_vs_Sal_0806_R", "VCU LXS PFC Et vs Sal M430A 2.0 (Aug06) Sscore **" - ], - [ - "VCUEtOH_0806_R", - "VCU LXS PFC EtOH M430A 2.0 (Aug06) RMA **" ] ] }, @@ -2478,12 +2935,14 @@ "MDP": { "Bone Femur mRNA": [ [ + "413", "UCLA_MDP_Femur_0113_RSN", "UCLA GSE27483 MDP Bone Femur ILM Mouse WG-6 v1, v1.1 (Jan13) RSN" ] ], "Dorsal Root Ganglia mRNA": [ [ + "402", "TSRI-DRG-AffyMOE430_0113-MDP", "TSRI DRG Affy Mouse Genome 430 2.0 (Jan13) RMA MDP" ] @@ -2496,32 +2955,39 @@ ], "Hippocampus mRNA": [ [ - "HC_M2_0606_MDP", - "Hippocampus Consortium M430v2 (Jun06) RMA MDP" - ], - [ + "273", "UMUTAffyExon_0209_RMA_MDP", "UMUTAffy Hippocampus Exon (Feb09) RMA MDP" + ], + [ + "272", + "HC_M2_0606_MDP", + "Hippocampus Consortium M430v2 (Jun06) RMA MDP" ] ], "Liver mRNA": [ [ + "370", "GSE16780MDP_UCLA_ML0911", "GSE16780 UCLA Mouse MDP Liver Affy HT M430A (Sep11) RMA" ], [ + "357", "JAX_CSB_L_0711", "JAX Liver Affy M430 2.0 (Jul11) MDP" ], [ + "358", "JAX_CSB_L_HF_0711", "JAX Liver HF Affy M430 2.0 (Jul11) MDP" ], [ + "359", "JAX_CSB_L_6C_0711", "JAX Liver 6C Affy M430 2.0 (Jul11) MDP" ], [ + "403", "JAX_liver_agil_MDP-0113", "Harrill-Rusyn MDP Liver Acetaminophen Tox Study (G4121A, 2009)" ] @@ -2536,6 +3002,7 @@ "NZBXFVB-N2": { "Mammary Tumors mRNA": [ [ + "225", "NCI_Mam_Tum_RMA_0409", "NCI Mammary M430v2 (Apr09) RMA" ] @@ -2558,10 +3025,12 @@ "Scripps-2013": { "Anterior Cingulate Cortex mRNA": [ [ + "450", "ScrBXDACC4G0513", "Scripps BXD ACC 4 Groups Affy Mouse Gene 1.0 ST (May13) RMA Gene Level **" ], [ + "451", "ScrBXDACC4GEx0513", "Scripps BXD ACC 4 Groups Affy Mouse Gene 1.0 ST (May13) RMA Exon Level **" ] @@ -2580,6 +3049,7 @@ "HXBBXH": { "Adrenal Gland mRNA": [ [ + "220", "HXB_Adrenal_1208", "MDC/CAS/UCL Adrenal 230A (Dec08) RMA" ] @@ -2592,42 +3062,50 @@ ], "Heart mRNA": [ [ + "221", "HXB_Heart_1208", "MDC/CAS/UCL Heart 230_V2 (Dec08) RMA" ] ], "Hippocampus mRNA": [ [ + "231", "UT_HippRatEx_RMA_0709", "UT Hippocampus Affy RaEx 1.0 Exon (Jul09) RMA" ] ], "Kidney mRNA": [ [ + "70", "KI_2A_0405_M", "MDC/CAS/ICL Kidney 230A (Apr05) MAS5" ], [ + "65", "KI_2A_0405_Rz", "MDC/CAS/ICL Kidney 230A (Apr05) RMA 2z+8" ], [ + "64", "KI_2A_0405_R", "MDC/CAS/ICL Kidney 230A (Apr05) RMA" ] ], "Liver mRNA": [ [ + "222", "HXB_Liver_1208", "MDC/CAS/UCL Liver 230v2 (Dec08) RMA" ] ], "Peritoneal Fat mRNA": [ [ + "79", "FT_2A_0805_M", "MDC/CAS/ICL Peritoneal Fat 230A (Aug05) MAS5" ], [ + "75", "FT_2A_0605_Rz", "MDC/CAS/ICL Peritoneal Fat 230A (Jun05) RMA 2z+8" ] @@ -2642,6 +3120,7 @@ "SRxSHRSPF2": { "Eye mRNA": [ [ + "226", "UIOWA_Eye_RMA_0906", "UIOWA Eye mRNA RAE230v2 (Sep06) RMA" ] diff --git a/wqflask/wqflask/static/new/javascript/dataset_select_menu.js b/wqflask/wqflask/static/new/javascript/dataset_select_menu.js index f91504be..1fe4cf75 100644 --- a/wqflask/wqflask/static/new/javascript/dataset_select_menu.js +++ b/wqflask/wqflask/static/new/javascript/dataset_select_menu.js @@ -28,6 +28,7 @@ $(function() { window.populate_group = populate_group; populate_type = function() { var group, species, type_list; + console.log("in populate type"); species = $('#species').val(); group = $('#group').val(); type_list = this.jdata.types[species][group]; @@ -37,6 +38,7 @@ $(function() { window.populate_type = populate_type; populate_dataset = function() { var dataset_list, group, species, type; + console.log("in populate dataset"); species = $('#species').val(); group = $('#group').val(); type = $('#type').val(); @@ -53,7 +55,11 @@ $(function() { _results = []; for (_i = 0, _len = items.length; _i < _len; _i++) { item = items[_i]; - _results.push(dropdown.append($("<option />").val(item[0]).text(item[1]))); + if (item.length > 2){ + _results.push(dropdown.append($("<option data-id=\""+item[0]+"\" />").val(item[1]).text(item[2]))); + } else { + _results.push(dropdown.append($("<option />").val(item[0]).text(item[1]))); + } } return _results; }; @@ -87,8 +93,8 @@ $(function() { $('#group_info').click(group_info); dataset_info = function() { var dataset, url; - dataset = $('#dataset').val(); - url = "/webqtl/main.py?FormID=sharinginfo&InfoPageName=" + dataset; + accession_id = $('#dataset option:selected').data("id"); + url = "http://genenetwork.org/webqtl/main.py?FormID=sharinginfo&GN_AccessionId=" + accession_id; return open_window(url, "Dataset Info"); }; $('#dataset_info').click(dataset_info); diff --git a/wqflask/wqflask/templates/index_page.html b/wqflask/wqflask/templates/index_page.html index 4803b17c..5d658bc7 100755 --- a/wqflask/wqflask/templates/index_page.html +++ b/wqflask/wqflask/templates/index_page.html @@ -61,10 +61,13 @@ <div class="form-group"> <label for="dataset" class="col-xs-1 control-label" style="width: 65px !important;">Dataset:</label> <div class="col-xs-10 controls input-append"> - <div class="col-xs-8"> - <select name="dataset" id="dataset" class="form-control span5" style="width: 450px !important;"></select> + <div class="col-xs-10"> + <select name="dataset" id="dataset" class="form-control span5" style="width: 340px !important;"></select> <i class="icon-question-sign"></i> </div> + <div class="col-xs-2"> + <button type="button" id="dataset_info" class="btn btn-primary form-control" style="width: 75px !important;">Info</button> + </div> </div> </div> diff --git a/wqflask/wqflask/templates/search_result_page.html b/wqflask/wqflask/templates/search_result_page.html index 7b7f0037..02365b1d 100755 --- a/wqflask/wqflask/templates/search_result_page.html +++ b/wqflask/wqflask/templates/search_result_page.html @@ -16,7 +16,7 @@ <input type="hidden" name="uc_id" id="uc_id" value="{{ uc_id }}"> <!-- Need to customize text more for other types of searches --> - <p>We searched <a href="/static/dbdoc/{{dataset.fullname}}">{{ dataset.fullname }}</a> + <p>We searched <a href="http://genenetwork.org/webqtl/main.py?FormID=sharinginfo&GN_AccessionId={{dataset.id}}">{{ dataset.fullname }}</a> to find all records {% for word in search_terms %} {% if word.key|lower == "rif" %} |