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-rwxr-xr-xwqflask/base/webqtlFormData.py57
-rw-r--r--wqflask/maintenance/gen_select_dataset.py97
-rw-r--r--wqflask/wqflask/correlation/CorrelationPage.py25
-rw-r--r--wqflask/wqflask/search_results.py67
-rw-r--r--wqflask/wqflask/static/new/javascript/dataset_menu_structure4004
-rw-r--r--wqflask/wqflask/views.py9
6 files changed, 203 insertions, 4056 deletions
diff --git a/wqflask/base/webqtlFormData.py b/wqflask/base/webqtlFormData.py
index 710c9f53..ff1db0e8 100755
--- a/wqflask/base/webqtlFormData.py
+++ b/wqflask/base/webqtlFormData.py
@@ -44,9 +44,9 @@ from utility import webqtlUtil
-class webqtlFormData:
+class webqtlFormData(object):
'Represents data from a WebQTL form page, needed to generate the next page'
-
+
attrs = ('formID','RISet','genotype','samplelist','allsamplelist', 'display_variance'
'suggestive','significance','submitID','identification', 'enablevariance',
'nperm','nboot','email','incparentsf1','genotype_1','genotype_2','traitInfo')
@@ -62,7 +62,7 @@ class webqtlFormData:
print("in webqtlFormData start_vars are:", pf(start_vars))
for item in webqtlFormData.attrs:
self.__dict__[item] = None
-
+
#ZS: This is only used in DataEditingPage.py (as far as I know)
self.varianceDispName = None
@@ -103,7 +103,7 @@ class webqtlFormData:
self.ppolar = None
self.mpolar = None
-
+
print("[yellow] self.RISet is:", self.RISet)
if self.RISet:
#try:
@@ -112,13 +112,13 @@ class webqtlFormData:
#except:
# f1 = f12 = self.mpolar = self.ppolar = None
-
+
def set_number(stringy):
return int(stringy) if stringy else 2000 # Rob asked to change the default value to 2000
self.nperm = set_number(self.nperm)
self.nboot = set_number(self.nboot)
-
+
#if self.allsamplelist:
# self.allsamplelist = map(string.strip, string.split(self.allsamplelist))
@@ -134,6 +134,7 @@ class webqtlFormData:
def __getitem__(self, key):
+ print("in __getitem__")
return self.__dict__[key]
def get(self, key, default=None):
@@ -154,22 +155,22 @@ class webqtlFormData:
'''read genotype from .geno file'''
if self.RISet == 'BXD300':
self.RISet = 'BXD'
-
+
assert self.RISet, "self.RISet needs to be set"
-
+
#genotype_1 is Dataset Object without parents and f1
#genotype_2 is Dataset Object with parents and f1 (not for intercross)
-
+
self.genotype_1 = reaper.Dataset()
-
+
full_filename = os.path.join(webqtlConfig.GENODIR, self.RISet + '.geno')
-
+
# reaper barfs on unicode filenames, so here we ensure it's a string
full_filename = str(full_filename)
self.genotype_1.read(full_filename)
-
+
print("Got to after read")
-
+
try:
# NL, 07/27/2010. ParInfo has been moved from webqtlForm.py to webqtlUtil.py;
_f1, _f12, _mat, _pat = webqtlUtil.ParInfo[self.RISet]
@@ -186,16 +187,16 @@ class webqtlFormData:
else:
self.incparentsf1 = 0
self.genotype = self.genotype_1
-
+
self.samplelist = list(self.genotype.prgy)
self.f1list = []
self.parlist = []
-
+
if _f1 and _f12:
self.f1list = [_f1, _f12]
if _mat and _pat:
self.parlist = [_mat, _pat]
-
+
def readData(self, samplelist, incf1=None):
'''read user input data or from trait data and analysis form'''
@@ -213,11 +214,11 @@ class webqtlFormData:
#print("before traitfiledata self.traitfile is:", pf(self.traitfile))
- traitfiledata = getattr(self, "traitfile", None)
- traitpastedata = getattr(self, "traitpaste", None)
- variancefiledata = getattr(self, "variancefile", None)
- variancepastedata = getattr(self, "variancepaste", None)
- Nfiledata = getattr(self, "Nfile", None)
+ traitfiledata = getattr(self, "traitfile", None)
+ traitpastedata = getattr(self, "traitpaste", None)
+ variancefiledata = getattr(self, "variancefile", None)
+ variancepastedata = getattr(self, "variancepaste", None)
+ Nfiledata = getattr(self, "Nfile", None)
#### Todo: Rewrite below when we get to someone submitting their own trait #####
@@ -246,7 +247,7 @@ class webqtlFormData:
elif len(values) > len(samplelist):
values = values[:len(samplelist)]
print("now values is:", values)
-
+
if variancefiledata:
tt = variancefiledata.split()
@@ -282,16 +283,16 @@ class webqtlFormData:
def informativeStrains(self, samplelist=None, include_variances = None):
'''if readData was called, use this to output informative samples (sample with values)'''
-
+
if not samplelist:
samplelist = self.samplelist
-
+
samples = []
values = []
variances = []
-
+
#print("self.allTraitData is:", pf(self.allTraitData))
-
+
for sample in samplelist:
if sample in self.allTraitData:
_val, _var = self.allTraitData[sample].value, self.allTraitData[sample].variance
@@ -305,13 +306,13 @@ class webqtlFormData:
samples.append(sample)
values.append(_val)
variances.append(None)
-
+
return samples, values, variances, len(samples)
#def FormDataAsFloat(self, key):
- #
+ #
# #try:
# # return float(self.key)
# #except:
diff --git a/wqflask/maintenance/gen_select_dataset.py b/wqflask/maintenance/gen_select_dataset.py
index 33813051..9224b884 100644
--- a/wqflask/maintenance/gen_select_dataset.py
+++ b/wqflask/maintenance/gen_select_dataset.py
@@ -76,17 +76,22 @@ def get_types(groups):
types[species] = {}
for group_name, _group_full_name in group_dict:
# make group an alias to shorten the code
- group = types[species][group_name] = [("Phenotypes", "Phenotypes"),
- ("Genotypes", "Genotypes")]
- Cursor.execute("""select distinct Tissue.Name, concat(Tissue.Name, ' mRNA') from
- ProbeFreeze,
- ProbeSetFreeze, InbredSet, Tissue where ProbeFreeze.TissueId = Tissue.Id and
+ types[species][group_name] = [("Phenotypes", "Phenotypes"), ("Genotypes", "Genotypes")]
+ types[species][group_name] += build_types(species, group_name)
+ return types
+
+
+def build_types(species, group):
+ Cursor.execute("""select distinct Tissue.Name, concat(Tissue.Name, ' mRNA')
+ from ProbeFreeze, ProbeSetFreeze, InbredSet, Tissue, Species
+ where Species.Name = %s and Species.Id = InbredSet.SpeciesId and
+ InbredSet.Name = %s and
+ ProbeFreeze.TissueId = Tissue.Id and
ProbeFreeze.InbredSetId = InbredSet.Id and
- InbredSet.Name = %s and ProbeSetFreeze.ProbeFreezeId = ProbeFreeze.Id and
+ ProbeSetFreeze.ProbeFreezeId = ProbeFreeze.Id and
ProbeSetFreeze.public > %s
- order by Tissue.Name""", (group_name, webqtlConfig.PUBLICTHRESH))
- group += Cursor.fetchall()
- return types
+ order by Tissue.Name""", (species, group, webqtlConfig.PUBLICTHRESH))
+ return Cursor.fetchall()
def get_datasets(types):
@@ -97,39 +102,44 @@ def get_datasets(types):
for group, type_list in group_dict.iteritems():
datasets[species][group] = {}
for type_name, type_full_name in type_list:
- dataset_text = dataset_value = None
- if type_name == "Phenotypes":
- dataset_value = "%sPublish" % group
- if group == 'MDP':
- dataset_text = "Mouse Phenome Database"
- else:
- dataset_text = "%s Published Phenotypes" % group
-
- elif type_name == "Genotypes":
- dataset_value = "%sGeno" % group
- dataset_text = "%s Genotypes" % group
-
- if dataset_value:
- datasets[species][group][type_name] = [(dataset_value, dataset_text)]
- else:
- Cursor.execute("""select ProbeSetFreeze.Name, ProbeSetFreeze.FullName from
- ProbeSetFreeze, ProbeFreeze, InbredSet, Tissue where
- ProbeSetFreeze.ProbeFreezeId = ProbeFreeze.Id and Tissue.Name = %s
- and ProbeFreeze.TissueId = Tissue.Id and ProbeFreeze.InbredSetId =
- InbredSet.Id and ProbeSetFreeze.public > %s order by
- ProbeSetFreeze.CreateTime desc""", (type_name,
- webqtlConfig.PUBLICTHRESH))
- datasets[species][group][type_name] = Cursor.fetchall()
-
+ datasets[species][group][type_name] = build_datasets(species, group, type_name)
return datasets
+def build_datasets(species, group, type_name):
+ dataset_text = dataset_value = None
+ if type_name == "Phenotypes":
+ dataset_value = "%sPublish" % group
+ if group == 'MDP':
+ dataset_text = "Mouse Phenome Database"
+ else:
+ dataset_text = "%s Published Phenotypes" % group
+
+ elif type_name == "Genotypes":
+ dataset_value = "%sGeno" % group
+ dataset_text = "%s Genotypes" % group
+
+ if dataset_value:
+ return [(dataset_value, dataset_text)]
+ else:
+ Cursor.execute("""select ProbeSetFreeze.Name, ProbeSetFreeze.FullName from
+ ProbeSetFreeze, ProbeFreeze, InbredSet, Tissue, Species where
+ Species.Name = %s and Species.Id = InbredSet.SpeciesId and
+ InbredSet.Name = %s and
+ ProbeSetFreeze.ProbeFreezeId = ProbeFreeze.Id and Tissue.Name = %s
+ and ProbeFreeze.TissueId = Tissue.Id and ProbeFreeze.InbredSetId =
+ InbredSet.Id and ProbeSetFreeze.public > %s order by
+ ProbeSetFreeze.CreateTime desc""", (
+ species, group, type_name, webqtlConfig.PUBLICTHRESH))
+ return Cursor.fetchall()
+
+
def main():
species = get_species()
groups = get_groups(species)
types = get_types(groups)
datasets = get_datasets(types)
-
+
species.append(('All Species', 'All Species'))
groups['All Species'] = [('All Groups', 'All Groups')]
types['All Species'] = {}
@@ -137,18 +147,25 @@ def main():
datasets['All Species'] = {}
datasets['All Species']['All Groups'] = {}
datasets['All Species']['All Groups']['Phenotypes'] = [('All Phenotypes','All Phenotypes')]
-
+
data = dict(species=species,
groups=groups,
types=types,
datasets=datasets,
)
-
- output_file = """../wqflask/static/new/javascript/dataset_menu_structure.json"""
-
+
+ output_file = """../wqflask/static/new/javascript/dataset_menu_structure"""
+
with open(output_file, 'w') as fh:
json.dump(data, fh, indent=" ", sort_keys=True)
-
+
+ print("\nWrote file to:", output_file)
+
+def test_it():
+ types = build_types("Mouse", "BXD")
+ print("build_types:", pf(types))
+ datasets = build_datasets("Mouse", "BXD", "Hippocampus")
+ print("build_datasets:", pf(datasets))
if __name__ == '__main__':
- main() \ No newline at end of file
+ main()
diff --git a/wqflask/wqflask/correlation/CorrelationPage.py b/wqflask/wqflask/correlation/CorrelationPage.py
index a9db493b..e48ea412 100644
--- a/wqflask/wqflask/correlation/CorrelationPage.py
+++ b/wqflask/wqflask/correlation/CorrelationPage.py
@@ -54,9 +54,6 @@ from dbFunction import webqtlDatabaseFunction
import utility.webqtlUtil #this is for parallel computing only.
import correlationFunction
-import logging
-logging.basicConfig(filename="/tmp/gn_log", level=logging.INFO)
-_log = logging.getLogger("correlation")
METHOD_SAMPLE_PEARSON = "1"
METHOD_SAMPLE_RANK = "2"
@@ -72,9 +69,9 @@ class AuthException(Exception): pass
class Trait(object):
-
-
- def __init__(self, name, raw_values = None, lit_corr = None, tissue_corr = None, p_tissue = None):
+
+
+ def __init__(self, name, raw_values = None, lit_corr = None, tissue_corr = None, p_tissue = None):
self.name = name
self.raw_values = raw_values
self.lit_corr = lit_corr
@@ -281,12 +278,12 @@ class CorrelationPage(templatePage):
def __init__(self, fd):
#print("in CorrelationPage __init__ fd is:", pf(fd.__dict__))
# Call the superclass constructor
-
+
# Put everything in fd into self
self.__dict__.update(fd.__dict__)
-
+
templatePage.__init__(self, fd)
-
+
#print("in CorrelationPage __init__ now fd is:", pf(fd.__dict__))
# Connect to the database
if not self.openMysql():
@@ -298,13 +295,13 @@ class CorrelationPage(templatePage):
sample_list = get_sample_data(fd)
print("sample_list is", pf(sample_list))
-
+
# Whether the user chose BXD Only, Non-BXD Only, or All Strains
# (replace BXD with whatever the group/inbredset name is)
# "mdp" stands for "mouse diversity panel" This is outdated; it now represents any
# cases/strains from the non-primary group
- mdp_choice = fd.MDPChoice if fd.allstrainlist else None
-
+ mdp_choice = fd.MDPChoice if fd.allstrainlist else None
+
self.species = get_species(fd, self.cursor)
#XZ, 09/18/2008: get all information about the user selected database.
@@ -334,11 +331,11 @@ class CorrelationPage(templatePage):
if len(self.sample_names) < self.corr_min_informative:
detail = ['Fewer than %d strain data were entered for %s data set. No calculation of correlation has been attempted.' % (self.corr_min_informative, fd.RISet)]
self.error(heading=None, detail=detail)
-
+
for key, value in self.__dict__.items():
if key.startswith("corr"):
print("[red] %s - %s" % (key, value))
-
+
#correlation_method = self.CORRELATION_METHODS[self.method]
#rankOrder = self.RANK_ORDERS[self.method]
diff --git a/wqflask/wqflask/search_results.py b/wqflask/wqflask/search_results.py
index 585deb8f..d44fbcef 100644
--- a/wqflask/wqflask/search_results.py
+++ b/wqflask/wqflask/search_results.py
@@ -36,17 +36,17 @@ from wqflask import parser
from utility import webqtlUtil
from dbFunction import webqtlDatabaseFunction
-import logging
-logging.basicConfig(filename=app.config['LOGFILE'], level=logging.INFO)
-
-_log = logging.getLogger("search")
-_ch = logging.StreamHandler()
-_log.addHandler(_ch)
+#import logging
+#logging.basicConfig(filename=app.config['LOGFILE'], level=logging.INFO)
+#
+#_log = logging.getLogger("search")
+#_ch = logging.StreamHandler()
+#_log.addHandler(_ch)
from utility import formatting
import sys
-_log.info("sys.path is: %s" % (sys.path))
+#_log.info("sys.path is: %s" % (sys.path))
#from base.JinjaPage import JinjaEnv, JinjaPage
@@ -60,20 +60,29 @@ class SearchResultPage(templatePage):
nkeywords = 0
def __init__(self, fd):
+ print("initing SearchResultPage")
+ import logging_tree
+ logging_tree.printout()
self.fd = fd
if not self.openMysql():
- return
+ print("ge0")
+ #return
+ print("ge0.5")
+ #causeerror
+ print("type of fd:", type(fd))
self.database = [fd['database']]
-
+ print("ge0.55")
if not self.database or self.database == 'spacer':
#Error, No database selected
heading = "Search Result"
detail = ['''No database was selected for this search, please
go back and SELECT at least one database.''']
+ print("ge0.6")
self.error(heading=heading,detail=detail,error="No Database Selected")
- return
+ #return
+ print("ge1")
###########################################
# Names and IDs of RISet / F2 set
###########################################
@@ -102,12 +111,12 @@ class SearchResultPage(templatePage):
# Can't use paramater substitution for table names apparently
db_type = self.database[0].type + "Freeze"
print("db_type [%s]: %s" % (type(db_type), db_type))
-
+
query = '''SELECT Id, Name, FullName, confidentiality,
AuthorisedUsers FROM %s WHERE Name = %%s''' % (db_type)
-
+
self.cursor.execute(query, (individualDB,))
-
+
(indId,
indName,
indFullName,
@@ -140,6 +149,7 @@ class SearchResultPage(templatePage):
self.error(heading=heading,detail=detail,error="No Database Selected")
return
+ print("ge2")
self.database[0].getRISet()
self.databaseCrosses = [self.database[0].riset]
self.databaseCrossIds = [self.database[0].risetid]
@@ -159,6 +169,8 @@ class SearchResultPage(templatePage):
detail = ["Search can only be performed among the same type of databases"]
self.error(heading=heading,detail=detail,error="Error")
return
+
+ print("ge3")
if self.dbType == "Publish":
self.searchField = ['Phenotype.Post_publication_description',
'Phenotype.Pre_publication_description',
@@ -182,7 +194,8 @@ class SearchResultPage(templatePage):
'RefSeq_TranscriptId']
elif self.dbType == "Geno":
self.searchField = ['Name','Chr']
-
+
+ print("ge4")
self.do_search()
###########################################
@@ -202,7 +215,7 @@ class SearchResultPage(templatePage):
###########################################
# Generate Mysql Query
###########################################
-
+
# Sam: We presume lines below aren't used...
#geneIdListQuery = fd.get('geneId', '')
#if geneIdListQuery:
@@ -346,7 +359,7 @@ class SearchResultPage(templatePage):
#self.dict['js1'] = ''
#self.dict['js2'] = 'onLoad="pageOffset()"'
#self.dict['layer'] = self.generateWarningLayer()
-
+
def start_search(self):
pass
@@ -674,7 +687,7 @@ class SearchResultPage(templatePage):
item = item['search_term']
self.nkeywords += 1
#ZS: If there are both AND and OR keywords, just use the OR keywords
- if k >=len(self.ORkeyword2):
+ if k >=len(self.ORkeyword2):
query = self.ANDQuery
DescriptionText = self.ANDDescriptionText
clausejoin = ' OR '
@@ -763,7 +776,7 @@ class SearchResultPage(templatePage):
detail = ["Pattern search is not available for phenotype databases at this time."]
self.error(heading=heading,detail=detail,error="Error")
return 0
- elif (self.dbType == "ProbeSet" and
+ elif (self.dbType == "ProbeSet" and
((_2Cmds and reduce(lambda x, y: (y not in [
"MEAN", "LRS", "PVALUE", "TRANSLRS", "CISLRS", "RANGE", "H2"
]) or x, _2Cmds, False))\
@@ -877,29 +890,29 @@ class SearchResultPage(templatePage):
query = self.ORQuery
DescriptionText = self.ORDescriptionText
itemCmd = item[0]
-
-
+
+
chr_number = item[1] # chromosome number
lower_limit = float(item[2])
upper_limit = float(item[3])
-
+
if self.dbType == "ProbeSet":
fname = 'target genes'
elif self.dbType == "Geno":
fname = 'loci'
-
+
if lower_limit > upper_limit:
lower_limit, upper_limit = upper_limit, lower_limit
-
+
clauseItem = " %s.Chr = '%s' and %s.Mb > %2.7f and %s.Mb < %2.7f " % (
self.dbType, chr_number, self.dbType, lower_limit, self.dbType, upper_limit)
-
-
+
+
query.append(" (%s) " % clauseItem)
self.orderByDefalut = itemCmd
-
- self.results_desc = dict()
+
+ self.results_desc = dict()
#DescriptionText.append(HT.Span(' with ', HT.U('target genes'), ' on chromosome %s between %g and %g Mb' % \
# (chr_number, min(lower_limit, upper_limit), max(lower_limit, upper_limit))))
diff --git a/wqflask/wqflask/static/new/javascript/dataset_menu_structure b/wqflask/wqflask/static/new/javascript/dataset_menu_structure
index d25d3cf5..1b7e4090 100644
--- a/wqflask/wqflask/static/new/javascript/dataset_menu_structure
+++ b/wqflask/wqflask/static/new/javascript/dataset_menu_structure
@@ -78,18 +78,6 @@
[
"B1MI0809R",
"Barley1 Leaf MOCK TTKS (Aug09) RMA"
- ],
- [
- "B30_K_1206_M",
- "Barley1 Leaf MAS 5.0 SCRI (Dec06)"
- ],
- [
- "B30_K_1206_R",
- "Barley1 Leaf gcRMA SCRI (Dec06)"
- ],
- [
- "B30_K_1206_Rn",
- "Barley1 Leaf gcRMAn SCRI (Dec06)"
]
],
"Phenotypes": [
@@ -122,32 +110,16 @@
],
"Leaf": [
[
- "B1LI0809R",
- "Barley1 Leaf INOC TTKS (Aug09) RMA"
- ],
- [
- "B1LI0809M5",
- "Barley1 Leaf INOC TTKS (Aug09) MAS5"
- ],
- [
- "B1MI0809M5",
- "Barley1 Leaf MOCK TTKS (Aug09) MAS5"
- ],
- [
- "B1MI0809R",
- "Barley1 Leaf MOCK TTKS (Aug09) RMA"
- ],
- [
"B30_K_1206_M",
"Barley1 Leaf MAS 5.0 SCRI (Dec06)"
],
[
- "B30_K_1206_R",
- "Barley1 Leaf gcRMA SCRI (Dec06)"
- ],
- [
"B30_K_1206_Rn",
"Barley1 Leaf gcRMAn SCRI (Dec06)"
+ ],
+ [
+ "B30_K_1206_R",
+ "Barley1 Leaf gcRMA SCRI (Dec06)"
]
],
"Phenotypes": [
@@ -176,14 +148,6 @@
[
"NCSU_DrosWB_LC_RMA_0111",
"NCSU Drosophila Whole Body (Jan11) RMA"
- ],
- [
- "UAB_DrosWB_LC_RMA_1009",
- "UAB Whole body D.m. mRNA control (Oct09) RMA"
- ],
- [
- "UAB_DrosWB_LE_RMA_1009",
- "UAB Whole body D.m. mRNA lead (pbAc) (Oct09) RMA"
]
]
},
@@ -202,10 +166,6 @@
],
"Whole Body": [
[
- "NCSU_DrosWB_LC_RMA_0111",
- "NCSU Drosophila Whole Body (Jan11) RMA"
- ],
- [
"UAB_DrosWB_LC_RMA_1009",
"UAB Whole body D.m. mRNA control (Oct09) RMA"
],
@@ -220,14 +180,6 @@
"AD-cases-controls": {
"Brain": [
[
- "GSE15222_F_N_RI_0409",
- "GSE15222 Human Brain Normal Myers (Apr09) RankInv"
- ],
- [
- "GSE15222_F_A_RI_0409",
- "GSE15222 Human Brain Alzheimer Myers (Apr09) RankInv"
- ],
- [
"GSE5281_F_RMA_N_0709",
"GSE5281 Human Brain Normal Full Liang (Jul09) RMA"
],
@@ -236,116 +188,12 @@
"GSE5281 Human Brain Alzheimer Full Liang (Jul09) RMA"
],
[
- "INIA_MacFas_brain_RMA_0110",
- "INIA Macaca fasicularis Brain (Jan10) RMA **"
- ],
- [
- "GSE15222_F_RI_0409",
- "GSE15222 Human Brain Myers (Apr09) RankInv"
- ],
- [
"GSE5281_F_RMA0709",
"GSE5281 Human Brain Full Liang (Jul09) RMA"
],
[
"GSE5281_RMA0709",
"GSE5281 Human Brain Best 102 Liang (Jul09) RMA"
- ],
- [
- "UCLA_CTB6B6CTF2_BRAIN_FEMALE",
- "UCLA CTB6B6CTF2 Brain Female mlratio **"
- ],
- [
- "UCLA_CTB6B6CTF2_BRAIN_MALE",
- "UCLA CTB6B6CTF2 Brain Male mlratio **"
- ],
- [
- "UCLA_BHF2_BRAIN_MALE",
- "UCLA BHF2 Brain Male mlratio"
- ],
- [
- "UCLA_BHF2_BRAIN_FEMALE",
- "UCLA BHF2 Brain Female mlratio"
- ],
- [
- "UCLA_BHHBF2_BRAIN_FEMALE",
- "UCLA BHHBF2 Brain Female Only"
- ],
- [
- "UCLA_BHHBF2_BRAIN_MALE",
- "UCLA BHHBF2 Brain Male Only"
- ],
- [
- "UCLA_BHHBF2_BRAIN_2005",
- "UCLA BHHBF2 Brain (2005) mlratio **"
- ],
- [
- "UCLA_CTB6B6CTF2_BRAIN_2005",
- "UCLA CTB6/B6CTF2 Brain (2005) mlratio **"
- ],
- [
- "UCLA_BHF2_BRAIN_0605",
- "UCLA BHF2 Brain (June05) mlratio"
- ],
- [
- "BR_M2_1106_R",
- "UCHSC BXD Whole Brain M430 2.0 (Nov06) RMA"
- ],
- [
- "IBR_M_0606_R",
- "INIA Brain mRNA M430 (Jun06) RMA"
- ],
- [
- "IBR_M_0106_P",
- "INIA Brain mRNA M430 (Jan06) PDNN"
- ],
- [
- "IBR_M_0106_R",
- "INIA Brain mRNA M430 (Jan06) RMA"
- ],
- [
- "BR_U_1105_P",
- "UTHSC Brain mRNA U74Av2 (Nov05) PDNN"
- ],
- [
- "BR_U_0805_M",
- "UTHSC Brain mRNA U74Av2 (Aug05) MAS5"
- ],
- [
- "BR_U_0805_P",
- "UTHSC Brain mRNA U74Av2 (Aug05) PDNN"
- ],
- [
- "BR_U_0805_R",
- "UTHSC Brain mRNA U74Av2 (Aug05) RMA"
- ],
- [
- "BRF2_M_0805_R",
- "OHSU/VA B6D2F2 Brain mRNA M430 (Aug05) RMA"
- ],
- [
- "BRF2_M_0805_P",
- "OHSU/VA B6D2F2 Brain mRNA M430 (Aug05) PDNN"
- ],
- [
- "BRF2_M_0805_M",
- "OHSU/VA B6D2F2 Brain mRNA M430 (Aug05) MAS5"
- ],
- [
- "BRF2_M_0304_P",
- "OHSU/VA B6D2F2 Brain mRNA M430A (Mar04) PDNN"
- ],
- [
- "BRF2_M_0304_R",
- "OHSU/VA B6D2F2 Brain mRNA M430A (Mar04) RMA"
- ],
- [
- "BRF2_M_0304_M",
- "OHSU/VA B6D2F2 Brain mRNA M430A (Mar04) MAS5"
- ],
- [
- "CB_M_0204_P",
- "INIA Brain mRNA M430 (Feb04) PDNN"
]
],
"Genotypes": [
@@ -364,132 +212,16 @@
"AD-cases-controls-Myers": {
"Brain": [
[
- "GSE15222_F_N_RI_0409",
- "GSE15222 Human Brain Normal Myers (Apr09) RankInv"
- ],
- [
"GSE15222_F_A_RI_0409",
"GSE15222 Human Brain Alzheimer Myers (Apr09) RankInv"
],
[
- "GSE5281_F_RMA_N_0709",
- "GSE5281 Human Brain Normal Full Liang (Jul09) RMA"
- ],
- [
- "GSE5281_F_RMA_Alzh_0709",
- "GSE5281 Human Brain Alzheimer Full Liang (Jul09) RMA"
- ],
- [
- "INIA_MacFas_brain_RMA_0110",
- "INIA Macaca fasicularis Brain (Jan10) RMA **"
+ "GSE15222_F_N_RI_0409",
+ "GSE15222 Human Brain Normal Myers (Apr09) RankInv"
],
[
"GSE15222_F_RI_0409",
"GSE15222 Human Brain Myers (Apr09) RankInv"
- ],
- [
- "GSE5281_F_RMA0709",
- "GSE5281 Human Brain Full Liang (Jul09) RMA"
- ],
- [
- "GSE5281_RMA0709",
- "GSE5281 Human Brain Best 102 Liang (Jul09) RMA"
- ],
- [
- "UCLA_CTB6B6CTF2_BRAIN_FEMALE",
- "UCLA CTB6B6CTF2 Brain Female mlratio **"
- ],
- [
- "UCLA_CTB6B6CTF2_BRAIN_MALE",
- "UCLA CTB6B6CTF2 Brain Male mlratio **"
- ],
- [
- "UCLA_BHF2_BRAIN_MALE",
- "UCLA BHF2 Brain Male mlratio"
- ],
- [
- "UCLA_BHF2_BRAIN_FEMALE",
- "UCLA BHF2 Brain Female mlratio"
- ],
- [
- "UCLA_BHHBF2_BRAIN_FEMALE",
- "UCLA BHHBF2 Brain Female Only"
- ],
- [
- "UCLA_BHHBF2_BRAIN_MALE",
- "UCLA BHHBF2 Brain Male Only"
- ],
- [
- "UCLA_BHHBF2_BRAIN_2005",
- "UCLA BHHBF2 Brain (2005) mlratio **"
- ],
- [
- "UCLA_CTB6B6CTF2_BRAIN_2005",
- "UCLA CTB6/B6CTF2 Brain (2005) mlratio **"
- ],
- [
- "UCLA_BHF2_BRAIN_0605",
- "UCLA BHF2 Brain (June05) mlratio"
- ],
- [
- "BR_M2_1106_R",
- "UCHSC BXD Whole Brain M430 2.0 (Nov06) RMA"
- ],
- [
- "IBR_M_0606_R",
- "INIA Brain mRNA M430 (Jun06) RMA"
- ],
- [
- "IBR_M_0106_P",
- "INIA Brain mRNA M430 (Jan06) PDNN"
- ],
- [
- "IBR_M_0106_R",
- "INIA Brain mRNA M430 (Jan06) RMA"
- ],
- [
- "BR_U_1105_P",
- "UTHSC Brain mRNA U74Av2 (Nov05) PDNN"
- ],
- [
- "BR_U_0805_M",
- "UTHSC Brain mRNA U74Av2 (Aug05) MAS5"
- ],
- [
- "BR_U_0805_P",
- "UTHSC Brain mRNA U74Av2 (Aug05) PDNN"
- ],
- [
- "BR_U_0805_R",
- "UTHSC Brain mRNA U74Av2 (Aug05) RMA"
- ],
- [
- "BRF2_M_0805_R",
- "OHSU/VA B6D2F2 Brain mRNA M430 (Aug05) RMA"
- ],
- [
- "BRF2_M_0805_P",
- "OHSU/VA B6D2F2 Brain mRNA M430 (Aug05) PDNN"
- ],
- [
- "BRF2_M_0805_M",
- "OHSU/VA B6D2F2 Brain mRNA M430 (Aug05) MAS5"
- ],
- [
- "BRF2_M_0304_P",
- "OHSU/VA B6D2F2 Brain mRNA M430A (Mar04) PDNN"
- ],
- [
- "BRF2_M_0304_R",
- "OHSU/VA B6D2F2 Brain mRNA M430A (Mar04) RMA"
- ],
- [
- "BRF2_M_0304_M",
- "OHSU/VA B6D2F2 Brain mRNA M430A (Mar04) MAS5"
- ],
- [
- "CB_M_0204_P",
- "INIA Brain mRNA M430 (Feb04) PDNN"
]
],
"Genotypes": [
@@ -566,46 +298,6 @@
[
"HBTRC-MLC_HD_0611",
"HBTRC-MLC Human Cerebellum Agilent HD (Jun11) mlratio"
- ],
- [
- "GCB_M2_0505_M",
- "GE-NIAAA Cerebellum mRNA M430v2 (May05) MAS5"
- ],
- [
- "GCB_M2_0505_R",
- "GE-NIAAA Cerebellum mRNA M430v2 (May05) RMA"
- ],
- [
- "GCB_M2_0505_P",
- "GE-NIAAA Cerebellum mRNA M430v2 (May05) PDNN"
- ],
- [
- "CB_M_0305_R",
- "SJUT Cerebellum mRNA M430 (Mar05) RMA"
- ],
- [
- "CB_M_0305_M",
- "SJUT Cerebellum mRNA M430 (Mar05) MAS5"
- ],
- [
- "CB_M_0305_P",
- "SJUT Cerebellum mRNA M430 (Mar05) PDNN"
- ],
- [
- "CB_M_1004_R",
- "SJUT Cerebellum mRNA M430 (Oct04) RMA"
- ],
- [
- "CB_M_1004_M",
- "SJUT Cerebellum mRNA M430 (Oct04) MAS5"
- ],
- [
- "CB_M_1004_P",
- "SJUT Cerebellum mRNA M430 (Oct04) PDNN"
- ],
- [
- "CB_M_1003_M",
- "SJUT Cerebellum mRNA M430 (Oct03) MAS5"
]
],
"Genotypes": [
@@ -636,58 +328,10 @@
[
"HBTRC-MLPFC_HD_0611",
"HBTRC-MLC Human Prefrontal Cortex Agilent HD (Jun11) mlratio"
- ],
- [
- "INIA_MacFas_Pf_RMA_0110",
- "INIA Macaca fasicularis Prefrontal Cortex control (Jan10) RMA **"
- ],
- [
- "INIA_MacFas_PfE_RMA_0110",
- "INIA Macaca fasicularis Prefrontal Cortex ethanol (Jan10) RMA **"
- ],
- [
- "VCUSal_1006_R",
- "VCU BXD PFC Et vs Sal M430 2.0 (Dec06) Sscore"
- ],
- [
- "VCUEtOH_1206_R",
- "VCU BXD PFC EtOH M430 2.0 (Dec06) RMA"
- ],
- [
- "VCUSal_1206_R",
- "VCU BXD PFC Sal M430 2.0 (Dec06) RMA"
- ],
- [
- "VCU_PF_Air_0111_R",
- "VCU BXD PFC CIE Air M430 2.0 (Jan11) RMA **"
- ],
- [
- "VCU_PF_Et_0111_R",
- "VCU BXD PFC CIE EtOH M430 2.0 (Jan11) RMA **"
- ],
- [
- "VCU_PF_AvE_0111_Ss",
- "VCU BXD PFC EtOH vs CIE Air M430 2.0 (Jan11) Sscore **"
- ],
- [
- "VCUEt_vs_Sal_0806_R",
- "VCU LXS PFC Et vs Sal M430A 2.0 (Aug06) Sscore **"
- ],
- [
- "VCUEtOH_0806_R",
- "VCU LXS PFC EtOH M430A 2.0 (Aug06) RMA **"
- ],
- [
- "VCUSal_0806_R",
- "VCU LXS PFC Sal M430A 2.0 (Aug06) RMA"
]
],
"Primary Visual Cortex": [
[
- "KIN_YSM_V1C_0711",
- "KIN/YSM Human V1C Affy Hu-Exon 1.0 ST (Jul11) Quantile **"
- ],
- [
"HBTRC-MLVC_0611",
"HBTRC-MLC Human Visual Cortex Agilent (Jun11) mlratio"
],
@@ -714,22 +358,6 @@
],
"Liver": [
[
- "GSE16780_UCLA_ML0911",
- "GSE16780 UCLA Hybrid MDP Liver Affy HT M430A (Sep11) RMA"
- ],
- [
- "JAX_CSB_L_0711",
- "JAX Liver Affy M430 2.0 (Jul11) MDP"
- ],
- [
- "JAX_CSB_L_HF_0711",
- "JAX Liver HF Affy M430 2.0 (Jul11) MDP"
- ],
- [
- "JAX_CSB_L_6C_0711",
- "JAX Liver 6C Affy M430 2.0 (Jul11) MDP"
- ],
- [
"HLC_0311",
"GSE9588 Human Liver Normal (Mar11) Both Sexes"
],
@@ -738,102 +366,6 @@
"GSE9588 Human Liver Normal (Mar11) Males"
],
[
- "LV_G_0106_F",
- "UNC Agilent G4121A Liver LOWESS Stanford (Jan06) Females"
- ],
- [
- "LV_G_0106_M",
- "UNC Agilent G4121A Liver LOWESS Stanford (Jan06) Males"
- ],
- [
- "LV_G_0106_B",
- "UNC Agilent G4121A Liver LOWESS Stanford (Jan06) Both Sexes"
- ],
- [
- "GenEx_BXD_liverSal_RMA_F_0211",
- "GenEx BXD Sal Liver Affy M430 2.0 (Feb11) RMA Females **"
- ],
- [
- "GenEx_BXD_liverSal_RMA_M_0211",
- "GenEx BXD Sal Liver Affy M430 2.0 (Feb11) RMA Males **"
- ],
- [
- "GenEx_BXD_liverSal_RMA_0211",
- "GenEx BXD Sal Liver Affy M430 2.0 (Feb11) RMA Both Sexes **"
- ],
- [
- "GenEx_BXD_liverEt_RMA_F_0211",
- "GenEx BXD EtOH Liver Affy M430 2.0 (Feb11) RMA Females **"
- ],
- [
- "GenEx_BXD_liverEt_RMA_M_0211",
- "GenEx BXD EtOH Liver Affy M430 2.0 (Feb11) RMA Males **"
- ],
- [
- "GenEx_BXD_liverEt_RMA_0211",
- "GenEx BXD EtOH Liver Affy M430 2.0 (Feb11) RMA Both Sexes **"
- ],
- [
- "SUH_Liv_RMA_0611",
- "SUH BXD Liver Affy Mouse Gene 1.0 ST (Jun11) RMA **"
- ],
- [
- "OXUKHS_ILMLiver_RI0510",
- "OX UK HS ILM6v1.1 Liver (May 2010) RankInv"
- ],
- [
- "HXB_Liver_1208",
- "MDC/CAS/UCL Liver 230v2 (Dec08) RMA"
- ],
- [
- "UCLA_CTB6B6CTF2_LIVER_MALE",
- "UCLA CTB6B6CTF2 Liver Male mlratio **"
- ],
- [
- "UCLA_BHF2_LIVER_MALE",
- "UCLA BHF2 Liver Male mlratio"
- ],
- [
- "UCLA_CTB6B6CTF2_LIVER_FEMALE",
- "UCLA CTB6B6CTF2 Liver Female mlratio **"
- ],
- [
- "UCLA_BHHBF2_LIVER_FEMALE",
- "UCLA BHHBF2 Liver Female Only"
- ],
- [
- "UCLA_BHHBF2_LIVER_MALE",
- "UCLA BHHBF2 Liver Male Only"
- ],
- [
- "UCLA_BHF2_LIVER_FEMALE",
- "UCLA BHF2 Liver Female mlratio"
- ],
- [
- "UCLA_BHHBF2_LIVER_2005",
- "UCLA BHHBF2 Liver (2005) mlratio **"
- ],
- [
- "UCLA_CTB6B6CTF2_LIVER_2005",
- "UCLA CTB6/B6CTF2 Liver (2005) mlratio **"
- ],
- [
- "UCLA_BHF2_LIVER_0605",
- "UCLA BHF2 Liver (June05) mlratio"
- ],
- [
- "UCLA_BDF2_LIVER_1999",
- "UCLA BDF2 Liver (1999) mlratio"
- ],
- [
- "LVF2_M_0704_R",
- "(B6 x BTBR)F2-ob/ob Liver mRNA M430 (Jul04) RMA"
- ],
- [
- "LVF2_M_0704_M",
- "(B6 x BTBR)F2-ob/ob Liver mRNA M430 (Jul04) MAS5"
- ],
- [
"HLCF_0311",
"GSE9588 Human Liver Normal (Mar11) Females"
]
@@ -850,30 +382,6 @@
[
"KIN_YSM_AMY_0711",
"KIN/YSM Human AMY Affy Hu-Exon 1.0 ST (Jul11) Quantile **"
- ],
- [
- "INIA_AmgCoh_0311",
- "INIA Amygdala Cohort Affy MoGene 1.0 ST (Mar11) RMA"
- ],
- [
- "INIA_Amg_BLA_RMA_1110",
- "INIA Amygdala Affy MoGene 1.0 ST (Nov10) RMA"
- ],
- [
- "INIA_Amg_BLA_RMA_M_1110",
- "INIA Amygdala Affy MoGene 1.0 ST (Nov10) RMA Male"
- ],
- [
- "INIA_Amg_BLA_RMA_F_1110",
- "INIA Amygdala Affy MoGene 1.0 ST (Nov10) RMA Female"
- ],
- [
- "INIA_MacFas_AMGc_RMA_0110",
- "INIA Macaca fasicularis Amygdala control (Jan10) RMA **"
- ],
- [
- "INIA_MacFas_AMGe_RMA_0110",
- "INIA Macaca fasicularis Amygdala ethanol (Jan10) RMA **"
]
],
"Caudal Ganglionic Eminence": [
@@ -922,122 +430,6 @@
[
"KIN_YSM_HIP_0711",
"KIN/YSM Human HIP Affy Hu-Exon 1.0 ST (Jul11) Quantile **"
- ],
- [
- "UMUTAffyExon_0209_RMA_MDP",
- "UMUTAffy Hippocampus Exon (Feb09) RMA MDP"
- ],
- [
- "HC_M2_0606_MDP",
- "Hippocampus Consortium M430v2 (Jun06) RMA MDP"
- ],
- [
- "OXUKHS_ILMHipp_RI0510",
- "OX UK HS ILM6v1.1 Hippocampus (May 2010) RankInv"
- ],
- [
- "INIA_MacFas_Hc_RMA_0110",
- "INIA Macaca fasicularis Hippocampus control (Jan10) RMA **"
- ],
- [
- "INIA_MacFas_He_RMA_0110",
- "INIA Macaca fasicularis Hippocampus ethanol (Jan10) RMA **"
- ],
- [
- "UT_HippRatEx_RMA_0709",
- "UT Hippocampus Affy RaEx 1.0 Exon (Jul09) RMA"
- ],
- [
- "Illum_LXS_Hipp_loess0807",
- "Hippocampus Illumina (Aug07) LOESS"
- ],
- [
- "Illum_LXS_Hipp_loess_nb0807",
- "Hippocampus Illumina (Aug07) LOESS_NB"
- ],
- [
- "Illum_LXS_Hipp_quant0807",
- "Hippocampus Illumina (Aug07) QUANT"
- ],
- [
- "Illum_LXS_Hipp_quant_nb0807",
- "Hippocampus Illumina (Aug07) QUANT_NB"
- ],
- [
- "Illum_LXS_Hipp_rsn0807",
- "Hippocampus Illumina (Aug07) RSN"
- ],
- [
- "Illum_LXS_Hipp_rsn_nb0807",
- "Hippocampus Illumina (Aug07) RSN_NB"
- ],
- [
- "Hipp_Illumina_RankInv_0507",
- "Hippocampus Illumina (May07) RankInv"
- ],
- [
- "HC_M2_0606_P",
- "Hippocampus Consortium M430v2 (Jun06) PDNN"
- ],
- [
- "HC_M2_0606_M",
- "Hippocampus Consortium M430v2 (Jun06) MAS5"
- ],
- [
- "HC_M2_0606_R",
- "Hippocampus Consortium M430v2 (Jun06) RMA"
- ],
- [
- "HC_M2CB_1205_R",
- "Hippocampus Consortium M430v2 CXB (Dec05) RMA"
- ],
- [
- "HC_M2CB_1205_P",
- "Hippocampus Consortium M430v2 CXB (Dec05) PDNN"
- ],
- [
- "UMUTAffyExon_0209_RMA",
- "UMUTAffy Hippocampus Exon (Feb09) RMA"
- ],
- [
- "UT_ILM_BXD_hipp_NON_0909",
- "UTHSC Hippocampus Illumina v6.1 NON (Sep09) RankInv"
- ],
- [
- "UT_ILM_BXD_hipp_NOS_0909",
- "UTHSC Hippocampus Illumina v6.1 NOS (Sep09) RankInv"
- ],
- [
- "UT_ILM_BXD_hipp_NOE_0909",
- "UTHSC Hippocampus Illumina v6.1 NOE (Sep09) RankInv"
- ],
- [
- "UT_ILM_BXD_hipp_RSS_0909",
- "UTHSC Hippocampus Illumina v6.1 RSS (Sep09) RankInv"
- ],
- [
- "UT_ILM_BXD_hipp_RSE_0909",
- "UTHSC Hippocampus Illumina v6.1 RSE (Sep09) RankInv"
- ],
- [
- "Illum_LXS_Hipp_RSE_1008",
- "Hippocampus Illumina RSE (Oct08) RankInv beta"
- ],
- [
- "Illum_LXS_Hipp_NOS_1008",
- "Hippocampus Illumina NOS (Oct08) RankInv beta"
- ],
- [
- "Illum_LXS_Hipp_NOE_1008",
- "Hippocampus Illumina NOE (Oct08) RankInv beta"
- ],
- [
- "Illum_LXS_Hipp_RSS_1008",
- "Hippocampus Illumina RSS (Oct08) RankInv beta"
- ],
- [
- "Illum_LXS_Hipp_NON_1008",
- "Hippocampus Illumina NON (Oct08) RankInv beta"
]
],
"Inferior Temporal Cortex": [
@@ -1128,96 +520,12 @@
[
"KIN_YSM_V1C_0711",
"KIN/YSM Human V1C Affy Hu-Exon 1.0 ST (Jul11) Quantile **"
- ],
- [
- "HBTRC-MLVC_0611",
- "HBTRC-MLC Human Visual Cortex Agilent (Jun11) mlratio"
- ],
- [
- "HBTRC-MLVC_N_0611",
- "HBTRC-MLC Human Visual Cortex Agilent Normal (Jun11) mlratio"
- ],
- [
- "HBTRC-MLVC_AD_0611",
- "HBTRC-MLC Human Visual Cortex Agilent AD (Jun11) mlratio"
- ],
- [
- "HBTRC-MLVC_HD_0611",
- "HBTRC-MLC Human Visual Cortex Agilent HD (Jun11) mlratio"
]
],
"Striatum": [
[
- "DevStriatum_ILM6.2P3RInv_1111",
- "BIDMC/UTHSC Dev Striatum P3 ILMv6.2 (Nov11) RankInv **"
- ],
- [
- "DevStriatum_ILM6.2P14RInv_1111",
- "BIDMC/UTHSC Dev Striatum P14 ILMv6.2 (Nov11) RankInv **"
- ],
- [
"KIN_YSM_STR_0711",
"KIN/YSM Human STR Affy Hu-Exon 1.0 ST (Jul11) Quantile **"
- ],
- [
- "OHSU_HS-CC_ILMStr_0211",
- "OHSU HS-CC Striatum ILM6v1 (Feb11) RankInv"
- ],
- [
- "UTHSC_Striatum_RankInv_1210",
- "HQF BXD Striatum ILM6.1 (Dec10v2) RankInv"
- ],
- [
- "UTHSC_Str_RankInv_1210",
- "HQF BXD Striatum ILM6.1 (Dec10) RankInv"
- ],
- [
- "UTHSC_1107_RankInv",
- "HQF BXD Striatum ILM6.1 (Nov07) RankInv"
- ],
- [
- "SA_M2_0905_P",
- "OHSU/VA B6D2F2 Striatum M430v2 (Sep05) PDNN"
- ],
- [
- "SA_M2_0905_M",
- "OHSU/VA B6D2F2 Striatum M430v2 (Sep05) MAS5"
- ],
- [
- "SA_M2_0905_R",
- "OHSU/VA B6D2F2 Striatum M430v2 (Sep05) RMA"
- ],
- [
- "SA_M2_0405_MC",
- "HBP Rosen Striatum M430V2 (Apr05) MAS5 Clean"
- ],
- [
- "SA_M2_0405_RC",
- "HBP Rosen Striatum M430V2 (Apr05) RMA Clean"
- ],
- [
- "SA_M2_0405_PC",
- "HBP Rosen Striatum M430V2 (Apr05) PDNN Clean"
- ],
- [
- "SA_M2_0405_SS",
- "HBP Rosen Striatum M430V2 (Apr05) SScore"
- ],
- [
- "SA_M2_0405_RR",
- "HBP Rosen Striatum M430V2 (Apr05) RMA Orig"
- ],
- [
- "Striatum_Exon_0209",
- "HQF Striatum Exon (Feb09) RMA"
- ],
- [
- "DevStriatum_ILM6.2P3RInv_1110",
- "BIDMC/UTHSC Dev Striatum P3 ILMv6.2 (Nov10) RankInv **"
- ],
- [
- "DevStriatum_ILM6.2P14RInv_1110",
- "BIDMC/UTHSC Dev Striatum P14 ILMv6.2 (Nov10) RankInv **"
]
],
"Temporal Cerebral Wall": [
@@ -1250,26 +558,6 @@
"Macaca-fasicularis": {
"Amygdala": [
[
- "KIN_YSM_AMY_0711",
- "KIN/YSM Human AMY Affy Hu-Exon 1.0 ST (Jul11) Quantile **"
- ],
- [
- "INIA_AmgCoh_0311",
- "INIA Amygdala Cohort Affy MoGene 1.0 ST (Mar11) RMA"
- ],
- [
- "INIA_Amg_BLA_RMA_1110",
- "INIA Amygdala Affy MoGene 1.0 ST (Nov10) RMA"
- ],
- [
- "INIA_Amg_BLA_RMA_M_1110",
- "INIA Amygdala Affy MoGene 1.0 ST (Nov10) RMA Male"
- ],
- [
- "INIA_Amg_BLA_RMA_F_1110",
- "INIA Amygdala Affy MoGene 1.0 ST (Nov10) RMA Female"
- ],
- [
"INIA_MacFas_AMGc_RMA_0110",
"INIA Macaca fasicularis Amygdala control (Jan10) RMA **"
],
@@ -1280,132 +568,8 @@
],
"Brain": [
[
- "GSE15222_F_N_RI_0409",
- "GSE15222 Human Brain Normal Myers (Apr09) RankInv"
- ],
- [
- "GSE15222_F_A_RI_0409",
- "GSE15222 Human Brain Alzheimer Myers (Apr09) RankInv"
- ],
- [
- "GSE5281_F_RMA_N_0709",
- "GSE5281 Human Brain Normal Full Liang (Jul09) RMA"
- ],
- [
- "GSE5281_F_RMA_Alzh_0709",
- "GSE5281 Human Brain Alzheimer Full Liang (Jul09) RMA"
- ],
- [
"INIA_MacFas_brain_RMA_0110",
"INIA Macaca fasicularis Brain (Jan10) RMA **"
- ],
- [
- "GSE15222_F_RI_0409",
- "GSE15222 Human Brain Myers (Apr09) RankInv"
- ],
- [
- "GSE5281_F_RMA0709",
- "GSE5281 Human Brain Full Liang (Jul09) RMA"
- ],
- [
- "GSE5281_RMA0709",
- "GSE5281 Human Brain Best 102 Liang (Jul09) RMA"
- ],
- [
- "UCLA_CTB6B6CTF2_BRAIN_FEMALE",
- "UCLA CTB6B6CTF2 Brain Female mlratio **"
- ],
- [
- "UCLA_CTB6B6CTF2_BRAIN_MALE",
- "UCLA CTB6B6CTF2 Brain Male mlratio **"
- ],
- [
- "UCLA_BHF2_BRAIN_MALE",
- "UCLA BHF2 Brain Male mlratio"
- ],
- [
- "UCLA_BHF2_BRAIN_FEMALE",
- "UCLA BHF2 Brain Female mlratio"
- ],
- [
- "UCLA_BHHBF2_BRAIN_FEMALE",
- "UCLA BHHBF2 Brain Female Only"
- ],
- [
- "UCLA_BHHBF2_BRAIN_MALE",
- "UCLA BHHBF2 Brain Male Only"
- ],
- [
- "UCLA_BHHBF2_BRAIN_2005",
- "UCLA BHHBF2 Brain (2005) mlratio **"
- ],
- [
- "UCLA_CTB6B6CTF2_BRAIN_2005",
- "UCLA CTB6/B6CTF2 Brain (2005) mlratio **"
- ],
- [
- "UCLA_BHF2_BRAIN_0605",
- "UCLA BHF2 Brain (June05) mlratio"
- ],
- [
- "BR_M2_1106_R",
- "UCHSC BXD Whole Brain M430 2.0 (Nov06) RMA"
- ],
- [
- "IBR_M_0606_R",
- "INIA Brain mRNA M430 (Jun06) RMA"
- ],
- [
- "IBR_M_0106_P",
- "INIA Brain mRNA M430 (Jan06) PDNN"
- ],
- [
- "IBR_M_0106_R",
- "INIA Brain mRNA M430 (Jan06) RMA"
- ],
- [
- "BR_U_1105_P",
- "UTHSC Brain mRNA U74Av2 (Nov05) PDNN"
- ],
- [
- "BR_U_0805_M",
- "UTHSC Brain mRNA U74Av2 (Aug05) MAS5"
- ],
- [
- "BR_U_0805_P",
- "UTHSC Brain mRNA U74Av2 (Aug05) PDNN"
- ],
- [
- "BR_U_0805_R",
- "UTHSC Brain mRNA U74Av2 (Aug05) RMA"
- ],
- [
- "BRF2_M_0805_R",
- "OHSU/VA B6D2F2 Brain mRNA M430 (Aug05) RMA"
- ],
- [
- "BRF2_M_0805_P",
- "OHSU/VA B6D2F2 Brain mRNA M430 (Aug05) PDNN"
- ],
- [
- "BRF2_M_0805_M",
- "OHSU/VA B6D2F2 Brain mRNA M430 (Aug05) MAS5"
- ],
- [
- "BRF2_M_0304_P",
- "OHSU/VA B6D2F2 Brain mRNA M430A (Mar04) PDNN"
- ],
- [
- "BRF2_M_0304_R",
- "OHSU/VA B6D2F2 Brain mRNA M430A (Mar04) RMA"
- ],
- [
- "BRF2_M_0304_M",
- "OHSU/VA B6D2F2 Brain mRNA M430A (Mar04) MAS5"
- ],
- [
- "CB_M_0204_P",
- "INIA Brain mRNA M430 (Feb04) PDNN"
]
],
"Genotypes": [
@@ -1416,124 +580,12 @@
],
"Hippocampus": [
[
- "KIN_YSM_HIP_0711",
- "KIN/YSM Human HIP Affy Hu-Exon 1.0 ST (Jul11) Quantile **"
- ],
- [
- "UMUTAffyExon_0209_RMA_MDP",
- "UMUTAffy Hippocampus Exon (Feb09) RMA MDP"
- ],
- [
- "HC_M2_0606_MDP",
- "Hippocampus Consortium M430v2 (Jun06) RMA MDP"
- ],
- [
- "OXUKHS_ILMHipp_RI0510",
- "OX UK HS ILM6v1.1 Hippocampus (May 2010) RankInv"
- ],
- [
"INIA_MacFas_Hc_RMA_0110",
"INIA Macaca fasicularis Hippocampus control (Jan10) RMA **"
],
[
"INIA_MacFas_He_RMA_0110",
"INIA Macaca fasicularis Hippocampus ethanol (Jan10) RMA **"
- ],
- [
- "UT_HippRatEx_RMA_0709",
- "UT Hippocampus Affy RaEx 1.0 Exon (Jul09) RMA"
- ],
- [
- "Illum_LXS_Hipp_loess0807",
- "Hippocampus Illumina (Aug07) LOESS"
- ],
- [
- "Illum_LXS_Hipp_loess_nb0807",
- "Hippocampus Illumina (Aug07) LOESS_NB"
- ],
- [
- "Illum_LXS_Hipp_quant0807",
- "Hippocampus Illumina (Aug07) QUANT"
- ],
- [
- "Illum_LXS_Hipp_quant_nb0807",
- "Hippocampus Illumina (Aug07) QUANT_NB"
- ],
- [
- "Illum_LXS_Hipp_rsn0807",
- "Hippocampus Illumina (Aug07) RSN"
- ],
- [
- "Illum_LXS_Hipp_rsn_nb0807",
- "Hippocampus Illumina (Aug07) RSN_NB"
- ],
- [
- "Hipp_Illumina_RankInv_0507",
- "Hippocampus Illumina (May07) RankInv"
- ],
- [
- "HC_M2_0606_P",
- "Hippocampus Consortium M430v2 (Jun06) PDNN"
- ],
- [
- "HC_M2_0606_M",
- "Hippocampus Consortium M430v2 (Jun06) MAS5"
- ],
- [
- "HC_M2_0606_R",
- "Hippocampus Consortium M430v2 (Jun06) RMA"
- ],
- [
- "HC_M2CB_1205_R",
- "Hippocampus Consortium M430v2 CXB (Dec05) RMA"
- ],
- [
- "HC_M2CB_1205_P",
- "Hippocampus Consortium M430v2 CXB (Dec05) PDNN"
- ],
- [
- "UMUTAffyExon_0209_RMA",
- "UMUTAffy Hippocampus Exon (Feb09) RMA"
- ],
- [
- "UT_ILM_BXD_hipp_NON_0909",
- "UTHSC Hippocampus Illumina v6.1 NON (Sep09) RankInv"
- ],
- [
- "UT_ILM_BXD_hipp_NOS_0909",
- "UTHSC Hippocampus Illumina v6.1 NOS (Sep09) RankInv"
- ],
- [
- "UT_ILM_BXD_hipp_NOE_0909",
- "UTHSC Hippocampus Illumina v6.1 NOE (Sep09) RankInv"
- ],
- [
- "UT_ILM_BXD_hipp_RSS_0909",
- "UTHSC Hippocampus Illumina v6.1 RSS (Sep09) RankInv"
- ],
- [
- "UT_ILM_BXD_hipp_RSE_0909",
- "UTHSC Hippocampus Illumina v6.1 RSE (Sep09) RankInv"
- ],
- [
- "Illum_LXS_Hipp_RSE_1008",
- "Hippocampus Illumina RSE (Oct08) RankInv beta"
- ],
- [
- "Illum_LXS_Hipp_NOS_1008",
- "Hippocampus Illumina NOS (Oct08) RankInv beta"
- ],
- [
- "Illum_LXS_Hipp_NOE_1008",
- "Hippocampus Illumina NOE (Oct08) RankInv beta"
- ],
- [
- "Illum_LXS_Hipp_RSS_1008",
- "Hippocampus Illumina RSS (Oct08) RankInv beta"
- ],
- [
- "Illum_LXS_Hipp_NON_1008",
- "Hippocampus Illumina NON (Oct08) RankInv beta"
]
],
"Nucleus Accumbens": [
@@ -1544,18 +596,6 @@
[
"INIA_MacFas_Ae_RMA_0110",
"INIA Macaca fasicularis Nucleus Accumbens ethanol (Jan10) RMA **"
- ],
- [
- "VCUSalo_1007_R",
- "VCU BXD NA Sal M430 2.0 (Oct07) RMA"
- ],
- [
- "VCUEtOH_1007_R",
- "VCU BXD NA EtOH M430 2.0 (Oct07) RMA **"
- ],
- [
- "VCUSal_1007_R",
- "VCU BXD NA Et vs Sal M430 2.0 (Oct07) Sscore **"
]
],
"Phenotypes": [
@@ -1566,64 +606,12 @@
],
"Prefrontal Cortex": [
[
- "HBTRC-MLPFC_0611",
- "HBTRC-MLC Human Prefrontal Cortex Agilent (Jun11) mlratio"
- ],
- [
- "HBTRC-MLPFC_N_0611",
- "HBTRC-MLC Human Prefrontal Cortex Agilent Normal (Jun11) mlratio"
- ],
- [
- "HBTRC-MLPFC_AD_0611",
- "HBTRC-MLC Human Prefrontal Cortex Agilent AD (Jun11) mlratio"
- ],
- [
- "HBTRC-MLPFC_HD_0611",
- "HBTRC-MLC Human Prefrontal Cortex Agilent HD (Jun11) mlratio"
- ],
- [
"INIA_MacFas_Pf_RMA_0110",
"INIA Macaca fasicularis Prefrontal Cortex control (Jan10) RMA **"
],
[
"INIA_MacFas_PfE_RMA_0110",
"INIA Macaca fasicularis Prefrontal Cortex ethanol (Jan10) RMA **"
- ],
- [
- "VCUSal_1006_R",
- "VCU BXD PFC Et vs Sal M430 2.0 (Dec06) Sscore"
- ],
- [
- "VCUEtOH_1206_R",
- "VCU BXD PFC EtOH M430 2.0 (Dec06) RMA"
- ],
- [
- "VCUSal_1206_R",
- "VCU BXD PFC Sal M430 2.0 (Dec06) RMA"
- ],
- [
- "VCU_PF_Air_0111_R",
- "VCU BXD PFC CIE Air M430 2.0 (Jan11) RMA **"
- ],
- [
- "VCU_PF_Et_0111_R",
- "VCU BXD PFC CIE EtOH M430 2.0 (Jan11) RMA **"
- ],
- [
- "VCU_PF_AvE_0111_Ss",
- "VCU BXD PFC EtOH vs CIE Air M430 2.0 (Jan11) Sscore **"
- ],
- [
- "VCUEt_vs_Sal_0806_R",
- "VCU LXS PFC Et vs Sal M430A 2.0 (Aug06) Sscore **"
- ],
- [
- "VCUEtOH_0806_R",
- "VCU LXS PFC EtOH M430A 2.0 (Aug06) RMA **"
- ],
- [
- "VCUSal_0806_R",
- "VCU LXS PFC Sal M430A 2.0 (Aug06) RMA"
]
]
}
@@ -1638,10 +626,6 @@
],
"Mammary Tumors": [
[
- "NCI_Mam_Tum_RMA_0409",
- "NCI Mammary M430v2 (Apr09) RMA"
- ],
- [
"NCI_Agil_Mam_Tum_RMA_0409",
"NCI Mammary LMT miRNA v2 (Apr09) RMA"
],
@@ -1666,38 +650,6 @@
[
"Eye_AXBXA_1008_RankInv",
"Eye AXBXA Illumina V6.2(Oct08) RankInv Beta"
- ],
- [
- "Eye_M2_0908_R",
- "Eye M430v2 (Sep08) RMA"
- ],
- [
- "Eye_M2_0908_R_NB",
- "Eye M430v2 Mutant Gpnmb (Sep08) RMA **"
- ],
- [
- "Eye_M2_0908_R_ND",
- "Eye M430v2 WT Gpnmb (Sep08) RMA **"
- ],
- [
- "Eye_M2_0908_WTWT",
- "Eye M430v2 WT WT (Sep08) RMA **"
- ],
- [
- "Eye_M2_0908_R_WT",
- "Eye M430v2 WT Tyrp1 (Sep08) RMA **"
- ],
- [
- "Eye_M2_0908_R_MT",
- "Eye M430v2 Mutant Tyrp1 (Sep08) RMA **"
- ],
- [
- "BXD_GLA_0911",
- "BXD Glaucoma Affy M430 2.0 Trial (Sep11) RMA **"
- ],
- [
- "UIOWA_Eye_RMA_0906",
- "UIOWA Eye mRNA RAE230v2 (Sep06) RMA"
]
],
"Genotypes": [
@@ -1722,128 +674,12 @@
],
"Liver": [
[
- "GSE16780_UCLA_ML0911",
- "GSE16780 UCLA Hybrid MDP Liver Affy HT M430A (Sep11) RMA"
- ],
- [
- "JAX_CSB_L_0711",
- "JAX Liver Affy M430 2.0 (Jul11) MDP"
- ],
- [
- "JAX_CSB_L_HF_0711",
- "JAX Liver HF Affy M430 2.0 (Jul11) MDP"
- ],
- [
- "JAX_CSB_L_6C_0711",
- "JAX Liver 6C Affy M430 2.0 (Jul11) MDP"
- ],
- [
- "HLC_0311",
- "GSE9588 Human Liver Normal (Mar11) Both Sexes"
- ],
- [
- "HLCM_0311",
- "GSE9588 Human Liver Normal (Mar11) Males"
- ],
- [
- "LV_G_0106_F",
- "UNC Agilent G4121A Liver LOWESS Stanford (Jan06) Females"
- ],
- [
- "LV_G_0106_M",
- "UNC Agilent G4121A Liver LOWESS Stanford (Jan06) Males"
- ],
- [
- "LV_G_0106_B",
- "UNC Agilent G4121A Liver LOWESS Stanford (Jan06) Both Sexes"
- ],
- [
- "GenEx_BXD_liverSal_RMA_F_0211",
- "GenEx BXD Sal Liver Affy M430 2.0 (Feb11) RMA Females **"
- ],
- [
- "GenEx_BXD_liverSal_RMA_M_0211",
- "GenEx BXD Sal Liver Affy M430 2.0 (Feb11) RMA Males **"
- ],
- [
- "GenEx_BXD_liverSal_RMA_0211",
- "GenEx BXD Sal Liver Affy M430 2.0 (Feb11) RMA Both Sexes **"
- ],
- [
- "GenEx_BXD_liverEt_RMA_F_0211",
- "GenEx BXD EtOH Liver Affy M430 2.0 (Feb11) RMA Females **"
- ],
- [
- "GenEx_BXD_liverEt_RMA_M_0211",
- "GenEx BXD EtOH Liver Affy M430 2.0 (Feb11) RMA Males **"
- ],
- [
- "GenEx_BXD_liverEt_RMA_0211",
- "GenEx BXD EtOH Liver Affy M430 2.0 (Feb11) RMA Both Sexes **"
- ],
- [
- "SUH_Liv_RMA_0611",
- "SUH BXD Liver Affy Mouse Gene 1.0 ST (Jun11) RMA **"
- ],
- [
- "OXUKHS_ILMLiver_RI0510",
- "OX UK HS ILM6v1.1 Liver (May 2010) RankInv"
- ],
- [
- "HXB_Liver_1208",
- "MDC/CAS/UCL Liver 230v2 (Dec08) RMA"
- ],
- [
- "UCLA_CTB6B6CTF2_LIVER_MALE",
- "UCLA CTB6B6CTF2 Liver Male mlratio **"
- ],
- [
- "UCLA_BHF2_LIVER_MALE",
- "UCLA BHF2 Liver Male mlratio"
- ],
- [
- "UCLA_CTB6B6CTF2_LIVER_FEMALE",
- "UCLA CTB6B6CTF2 Liver Female mlratio **"
- ],
- [
- "UCLA_BHHBF2_LIVER_FEMALE",
- "UCLA BHHBF2 Liver Female Only"
- ],
- [
- "UCLA_BHHBF2_LIVER_MALE",
- "UCLA BHHBF2 Liver Male Only"
- ],
- [
- "UCLA_BHF2_LIVER_FEMALE",
- "UCLA BHF2 Liver Female mlratio"
- ],
- [
- "UCLA_BHHBF2_LIVER_2005",
- "UCLA BHHBF2 Liver (2005) mlratio **"
- ],
- [
- "UCLA_CTB6B6CTF2_LIVER_2005",
- "UCLA CTB6/B6CTF2 Liver (2005) mlratio **"
- ],
- [
- "UCLA_BHF2_LIVER_0605",
- "UCLA BHF2 Liver (June05) mlratio"
- ],
- [
- "UCLA_BDF2_LIVER_1999",
- "UCLA BDF2 Liver (1999) mlratio"
- ],
- [
"LVF2_M_0704_R",
"(B6 x BTBR)F2-ob/ob Liver mRNA M430 (Jul04) RMA"
],
[
"LVF2_M_0704_M",
"(B6 x BTBR)F2-ob/ob Liver mRNA M430 (Jul04) MAS5"
- ],
- [
- "HLCF_0311",
- "GSE9588 Human Liver Normal (Mar11) Females"
]
],
"Phenotypes": [
@@ -1856,118 +692,18 @@
"B6D2F2": {
"Brain": [
[
- "GSE15222_F_N_RI_0409",
- "GSE15222 Human Brain Normal Myers (Apr09) RankInv"
- ],
- [
- "GSE15222_F_A_RI_0409",
- "GSE15222 Human Brain Alzheimer Myers (Apr09) RankInv"
- ],
- [
- "GSE5281_F_RMA_N_0709",
- "GSE5281 Human Brain Normal Full Liang (Jul09) RMA"
- ],
- [
- "GSE5281_F_RMA_Alzh_0709",
- "GSE5281 Human Brain Alzheimer Full Liang (Jul09) RMA"
- ],
- [
- "INIA_MacFas_brain_RMA_0110",
- "INIA Macaca fasicularis Brain (Jan10) RMA **"
- ],
- [
- "GSE15222_F_RI_0409",
- "GSE15222 Human Brain Myers (Apr09) RankInv"
- ],
- [
- "GSE5281_F_RMA0709",
- "GSE5281 Human Brain Full Liang (Jul09) RMA"
- ],
- [
- "GSE5281_RMA0709",
- "GSE5281 Human Brain Best 102 Liang (Jul09) RMA"
- ],
- [
- "UCLA_CTB6B6CTF2_BRAIN_FEMALE",
- "UCLA CTB6B6CTF2 Brain Female mlratio **"
- ],
- [
- "UCLA_CTB6B6CTF2_BRAIN_MALE",
- "UCLA CTB6B6CTF2 Brain Male mlratio **"
- ],
- [
- "UCLA_BHF2_BRAIN_MALE",
- "UCLA BHF2 Brain Male mlratio"
- ],
- [
- "UCLA_BHF2_BRAIN_FEMALE",
- "UCLA BHF2 Brain Female mlratio"
- ],
- [
- "UCLA_BHHBF2_BRAIN_FEMALE",
- "UCLA BHHBF2 Brain Female Only"
- ],
- [
- "UCLA_BHHBF2_BRAIN_MALE",
- "UCLA BHHBF2 Brain Male Only"
- ],
- [
- "UCLA_BHHBF2_BRAIN_2005",
- "UCLA BHHBF2 Brain (2005) mlratio **"
- ],
- [
- "UCLA_CTB6B6CTF2_BRAIN_2005",
- "UCLA CTB6/B6CTF2 Brain (2005) mlratio **"
- ],
- [
- "UCLA_BHF2_BRAIN_0605",
- "UCLA BHF2 Brain (June05) mlratio"
- ],
- [
- "BR_M2_1106_R",
- "UCHSC BXD Whole Brain M430 2.0 (Nov06) RMA"
- ],
- [
- "IBR_M_0606_R",
- "INIA Brain mRNA M430 (Jun06) RMA"
- ],
- [
- "IBR_M_0106_P",
- "INIA Brain mRNA M430 (Jan06) PDNN"
- ],
- [
- "IBR_M_0106_R",
- "INIA Brain mRNA M430 (Jan06) RMA"
- ],
- [
- "BR_U_1105_P",
- "UTHSC Brain mRNA U74Av2 (Nov05) PDNN"
- ],
- [
- "BR_U_0805_M",
- "UTHSC Brain mRNA U74Av2 (Aug05) MAS5"
- ],
- [
- "BR_U_0805_P",
- "UTHSC Brain mRNA U74Av2 (Aug05) PDNN"
- ],
- [
- "BR_U_0805_R",
- "UTHSC Brain mRNA U74Av2 (Aug05) RMA"
- ],
- [
"BRF2_M_0805_R",
"OHSU/VA B6D2F2 Brain mRNA M430 (Aug05) RMA"
],
[
- "BRF2_M_0805_P",
- "OHSU/VA B6D2F2 Brain mRNA M430 (Aug05) PDNN"
- ],
- [
"BRF2_M_0805_M",
"OHSU/VA B6D2F2 Brain mRNA M430 (Aug05) MAS5"
],
[
+ "BRF2_M_0805_P",
+ "OHSU/VA B6D2F2 Brain mRNA M430 (Aug05) PDNN"
+ ],
+ [
"BRF2_M_0304_P",
"OHSU/VA B6D2F2 Brain mRNA M430A (Mar04) PDNN"
],
@@ -1978,10 +714,6 @@
[
"BRF2_M_0304_M",
"OHSU/VA B6D2F2 Brain mRNA M430A (Mar04) MAS5"
- ],
- [
- "CB_M_0204_P",
- "INIA Brain mRNA M430 (Feb04) PDNN"
]
],
"Genotypes": [
@@ -2006,128 +738,8 @@
],
"Liver": [
[
- "GSE16780_UCLA_ML0911",
- "GSE16780 UCLA Hybrid MDP Liver Affy HT M430A (Sep11) RMA"
- ],
- [
- "JAX_CSB_L_0711",
- "JAX Liver Affy M430 2.0 (Jul11) MDP"
- ],
- [
- "JAX_CSB_L_HF_0711",
- "JAX Liver HF Affy M430 2.0 (Jul11) MDP"
- ],
- [
- "JAX_CSB_L_6C_0711",
- "JAX Liver 6C Affy M430 2.0 (Jul11) MDP"
- ],
- [
- "HLC_0311",
- "GSE9588 Human Liver Normal (Mar11) Both Sexes"
- ],
- [
- "HLCM_0311",
- "GSE9588 Human Liver Normal (Mar11) Males"
- ],
- [
- "LV_G_0106_F",
- "UNC Agilent G4121A Liver LOWESS Stanford (Jan06) Females"
- ],
- [
- "LV_G_0106_M",
- "UNC Agilent G4121A Liver LOWESS Stanford (Jan06) Males"
- ],
- [
- "LV_G_0106_B",
- "UNC Agilent G4121A Liver LOWESS Stanford (Jan06) Both Sexes"
- ],
- [
- "GenEx_BXD_liverSal_RMA_F_0211",
- "GenEx BXD Sal Liver Affy M430 2.0 (Feb11) RMA Females **"
- ],
- [
- "GenEx_BXD_liverSal_RMA_M_0211",
- "GenEx BXD Sal Liver Affy M430 2.0 (Feb11) RMA Males **"
- ],
- [
- "GenEx_BXD_liverSal_RMA_0211",
- "GenEx BXD Sal Liver Affy M430 2.0 (Feb11) RMA Both Sexes **"
- ],
- [
- "GenEx_BXD_liverEt_RMA_F_0211",
- "GenEx BXD EtOH Liver Affy M430 2.0 (Feb11) RMA Females **"
- ],
- [
- "GenEx_BXD_liverEt_RMA_M_0211",
- "GenEx BXD EtOH Liver Affy M430 2.0 (Feb11) RMA Males **"
- ],
- [
- "GenEx_BXD_liverEt_RMA_0211",
- "GenEx BXD EtOH Liver Affy M430 2.0 (Feb11) RMA Both Sexes **"
- ],
- [
- "SUH_Liv_RMA_0611",
- "SUH BXD Liver Affy Mouse Gene 1.0 ST (Jun11) RMA **"
- ],
- [
- "OXUKHS_ILMLiver_RI0510",
- "OX UK HS ILM6v1.1 Liver (May 2010) RankInv"
- ],
- [
- "HXB_Liver_1208",
- "MDC/CAS/UCL Liver 230v2 (Dec08) RMA"
- ],
- [
- "UCLA_CTB6B6CTF2_LIVER_MALE",
- "UCLA CTB6B6CTF2 Liver Male mlratio **"
- ],
- [
- "UCLA_BHF2_LIVER_MALE",
- "UCLA BHF2 Liver Male mlratio"
- ],
- [
- "UCLA_CTB6B6CTF2_LIVER_FEMALE",
- "UCLA CTB6B6CTF2 Liver Female mlratio **"
- ],
- [
- "UCLA_BHHBF2_LIVER_FEMALE",
- "UCLA BHHBF2 Liver Female Only"
- ],
- [
- "UCLA_BHHBF2_LIVER_MALE",
- "UCLA BHHBF2 Liver Male Only"
- ],
- [
- "UCLA_BHF2_LIVER_FEMALE",
- "UCLA BHF2 Liver Female mlratio"
- ],
- [
- "UCLA_BHHBF2_LIVER_2005",
- "UCLA BHHBF2 Liver (2005) mlratio **"
- ],
- [
- "UCLA_CTB6B6CTF2_LIVER_2005",
- "UCLA CTB6/B6CTF2 Liver (2005) mlratio **"
- ],
- [
- "UCLA_BHF2_LIVER_0605",
- "UCLA BHF2 Liver (June05) mlratio"
- ],
- [
"UCLA_BDF2_LIVER_1999",
"UCLA BDF2 Liver (1999) mlratio"
- ],
- [
- "LVF2_M_0704_R",
- "(B6 x BTBR)F2-ob/ob Liver mRNA M430 (Jul04) RMA"
- ],
- [
- "LVF2_M_0704_M",
- "(B6 x BTBR)F2-ob/ob Liver mRNA M430 (Jul04) MAS5"
- ],
- [
- "HLCF_0311",
- "GSE9588 Human Liver Normal (Mar11) Females"
]
],
"Phenotypes": [
@@ -2152,76 +764,16 @@
],
"Striatum": [
[
- "DevStriatum_ILM6.2P3RInv_1111",
- "BIDMC/UTHSC Dev Striatum P3 ILMv6.2 (Nov11) RankInv **"
- ],
- [
- "DevStriatum_ILM6.2P14RInv_1111",
- "BIDMC/UTHSC Dev Striatum P14 ILMv6.2 (Nov11) RankInv **"
- ],
- [
- "KIN_YSM_STR_0711",
- "KIN/YSM Human STR Affy Hu-Exon 1.0 ST (Jul11) Quantile **"
- ],
- [
- "OHSU_HS-CC_ILMStr_0211",
- "OHSU HS-CC Striatum ILM6v1 (Feb11) RankInv"
- ],
- [
- "UTHSC_Striatum_RankInv_1210",
- "HQF BXD Striatum ILM6.1 (Dec10v2) RankInv"
- ],
- [
- "UTHSC_Str_RankInv_1210",
- "HQF BXD Striatum ILM6.1 (Dec10) RankInv"
- ],
- [
- "UTHSC_1107_RankInv",
- "HQF BXD Striatum ILM6.1 (Nov07) RankInv"
- ],
- [
- "SA_M2_0905_P",
- "OHSU/VA B6D2F2 Striatum M430v2 (Sep05) PDNN"
- ],
- [
- "SA_M2_0905_M",
- "OHSU/VA B6D2F2 Striatum M430v2 (Sep05) MAS5"
- ],
- [
"SA_M2_0905_R",
"OHSU/VA B6D2F2 Striatum M430v2 (Sep05) RMA"
],
[
- "SA_M2_0405_MC",
- "HBP Rosen Striatum M430V2 (Apr05) MAS5 Clean"
- ],
- [
- "SA_M2_0405_RC",
- "HBP Rosen Striatum M430V2 (Apr05) RMA Clean"
- ],
- [
- "SA_M2_0405_PC",
- "HBP Rosen Striatum M430V2 (Apr05) PDNN Clean"
- ],
- [
- "SA_M2_0405_SS",
- "HBP Rosen Striatum M430V2 (Apr05) SScore"
- ],
- [
- "SA_M2_0405_RR",
- "HBP Rosen Striatum M430V2 (Apr05) RMA Orig"
- ],
- [
- "Striatum_Exon_0209",
- "HQF Striatum Exon (Feb09) RMA"
- ],
- [
- "DevStriatum_ILM6.2P3RInv_1110",
- "BIDMC/UTHSC Dev Striatum P3 ILMv6.2 (Nov10) RankInv **"
+ "SA_M2_0905_M",
+ "OHSU/VA B6D2F2 Striatum M430v2 (Sep05) MAS5"
],
[
- "DevStriatum_ILM6.2P14RInv_1110",
- "BIDMC/UTHSC Dev Striatum P14 ILMv6.2 (Nov10) RankInv **"
+ "SA_M2_0905_P",
+ "OHSU/VA B6D2F2 Striatum M430v2 (Sep05) PDNN"
]
]
},
@@ -2232,80 +784,16 @@
"UCLA BHF2 Adipose Male mlratio"
],
[
- "UCLA_CTB6B6CTF2_ADIPOSE_MALE",
- "UCLA CTB6B6CTF2 Adipose Male mlratio **"
- ],
- [
"UCLA_BHF2_ADIPOSE_FEMALE",
"UCLA BHF2 Adipose Female mlratio"
],
[
- "UCLA_CTB6B6CTF2_ADIPOSE_FEMALE",
- "UCLA CTB6B6CTF2 Adipose Female mlratio **"
- ],
- [
- "UCLA_BHHBF2_ADIPOSE_MALE",
- "UCLA BHHBF2 Adipose Male Only"
- ],
- [
- "UCLA_BHHBF2_ADIPOSE_FEMALE",
- "UCLA BHHBF2 Adipose Female Only"
- ],
- [
- "UCLA_BHHBF2_ADIPOSE_2005",
- "UCLA BHHBF2 Adipose (2005) mlratio **"
- ],
- [
- "UCLA_CTB6B6CTF2_ADIPOSE_2005",
- "UCLA CTB6/B6CTF2 Adipose (2005) mlratio **"
- ],
- [
"UCLA_BHF2_ADIPOSE_0605",
"UCLA BHF2 Adipose (June05) mlratio"
]
],
"Brain": [
[
- "GSE15222_F_N_RI_0409",
- "GSE15222 Human Brain Normal Myers (Apr09) RankInv"
- ],
- [
- "GSE15222_F_A_RI_0409",
- "GSE15222 Human Brain Alzheimer Myers (Apr09) RankInv"
- ],
- [
- "GSE5281_F_RMA_N_0709",
- "GSE5281 Human Brain Normal Full Liang (Jul09) RMA"
- ],
- [
- "GSE5281_F_RMA_Alzh_0709",
- "GSE5281 Human Brain Alzheimer Full Liang (Jul09) RMA"
- ],
- [
- "INIA_MacFas_brain_RMA_0110",
- "INIA Macaca fasicularis Brain (Jan10) RMA **"
- ],
- [
- "GSE15222_F_RI_0409",
- "GSE15222 Human Brain Myers (Apr09) RankInv"
- ],
- [
- "GSE5281_F_RMA0709",
- "GSE5281 Human Brain Full Liang (Jul09) RMA"
- ],
- [
- "GSE5281_RMA0709",
- "GSE5281 Human Brain Best 102 Liang (Jul09) RMA"
- ],
- [
- "UCLA_CTB6B6CTF2_BRAIN_FEMALE",
- "UCLA CTB6B6CTF2 Brain Female mlratio **"
- ],
- [
- "UCLA_CTB6B6CTF2_BRAIN_MALE",
- "UCLA CTB6B6CTF2 Brain Male mlratio **"
- ],
- [
"UCLA_BHF2_BRAIN_MALE",
"UCLA BHF2 Brain Male mlratio"
],
@@ -2314,84 +802,8 @@
"UCLA BHF2 Brain Female mlratio"
],
[
- "UCLA_BHHBF2_BRAIN_FEMALE",
- "UCLA BHHBF2 Brain Female Only"
- ],
- [
- "UCLA_BHHBF2_BRAIN_MALE",
- "UCLA BHHBF2 Brain Male Only"
- ],
- [
- "UCLA_BHHBF2_BRAIN_2005",
- "UCLA BHHBF2 Brain (2005) mlratio **"
- ],
- [
- "UCLA_CTB6B6CTF2_BRAIN_2005",
- "UCLA CTB6/B6CTF2 Brain (2005) mlratio **"
- ],
- [
"UCLA_BHF2_BRAIN_0605",
"UCLA BHF2 Brain (June05) mlratio"
- ],
- [
- "BR_M2_1106_R",
- "UCHSC BXD Whole Brain M430 2.0 (Nov06) RMA"
- ],
- [
- "IBR_M_0606_R",
- "INIA Brain mRNA M430 (Jun06) RMA"
- ],
- [
- "IBR_M_0106_P",
- "INIA Brain mRNA M430 (Jan06) PDNN"
- ],
- [
- "IBR_M_0106_R",
- "INIA Brain mRNA M430 (Jan06) RMA"
- ],
- [
- "BR_U_1105_P",
- "UTHSC Brain mRNA U74Av2 (Nov05) PDNN"
- ],
- [
- "BR_U_0805_M",
- "UTHSC Brain mRNA U74Av2 (Aug05) MAS5"
- ],
- [
- "BR_U_0805_P",
- "UTHSC Brain mRNA U74Av2 (Aug05) PDNN"
- ],
- [
- "BR_U_0805_R",
- "UTHSC Brain mRNA U74Av2 (Aug05) RMA"
- ],
- [
- "BRF2_M_0805_R",
- "OHSU/VA B6D2F2 Brain mRNA M430 (Aug05) RMA"
- ],
- [
- "BRF2_M_0805_P",
- "OHSU/VA B6D2F2 Brain mRNA M430 (Aug05) PDNN"
- ],
- [
- "BRF2_M_0805_M",
- "OHSU/VA B6D2F2 Brain mRNA M430 (Aug05) MAS5"
- ],
- [
- "BRF2_M_0304_P",
- "OHSU/VA B6D2F2 Brain mRNA M430A (Mar04) PDNN"
- ],
- [
- "BRF2_M_0304_R",
- "OHSU/VA B6D2F2 Brain mRNA M430A (Mar04) RMA"
- ],
- [
- "BRF2_M_0304_M",
- "OHSU/VA B6D2F2 Brain mRNA M430A (Mar04) MAS5"
- ],
- [
- "CB_M_0204_P",
- "INIA Brain mRNA M430 (Feb04) PDNN"
]
],
"Genotypes": [
@@ -2402,160 +814,20 @@
],
"Liver": [
[
- "GSE16780_UCLA_ML0911",
- "GSE16780 UCLA Hybrid MDP Liver Affy HT M430A (Sep11) RMA"
- ],
- [
- "JAX_CSB_L_0711",
- "JAX Liver Affy M430 2.0 (Jul11) MDP"
- ],
- [
- "JAX_CSB_L_HF_0711",
- "JAX Liver HF Affy M430 2.0 (Jul11) MDP"
- ],
- [
- "JAX_CSB_L_6C_0711",
- "JAX Liver 6C Affy M430 2.0 (Jul11) MDP"
- ],
- [
- "HLC_0311",
- "GSE9588 Human Liver Normal (Mar11) Both Sexes"
- ],
- [
- "HLCM_0311",
- "GSE9588 Human Liver Normal (Mar11) Males"
- ],
- [
- "LV_G_0106_F",
- "UNC Agilent G4121A Liver LOWESS Stanford (Jan06) Females"
- ],
- [
- "LV_G_0106_M",
- "UNC Agilent G4121A Liver LOWESS Stanford (Jan06) Males"
- ],
- [
- "LV_G_0106_B",
- "UNC Agilent G4121A Liver LOWESS Stanford (Jan06) Both Sexes"
- ],
- [
- "GenEx_BXD_liverSal_RMA_F_0211",
- "GenEx BXD Sal Liver Affy M430 2.0 (Feb11) RMA Females **"
- ],
- [
- "GenEx_BXD_liverSal_RMA_M_0211",
- "GenEx BXD Sal Liver Affy M430 2.0 (Feb11) RMA Males **"
- ],
- [
- "GenEx_BXD_liverSal_RMA_0211",
- "GenEx BXD Sal Liver Affy M430 2.0 (Feb11) RMA Both Sexes **"
- ],
- [
- "GenEx_BXD_liverEt_RMA_F_0211",
- "GenEx BXD EtOH Liver Affy M430 2.0 (Feb11) RMA Females **"
- ],
- [
- "GenEx_BXD_liverEt_RMA_M_0211",
- "GenEx BXD EtOH Liver Affy M430 2.0 (Feb11) RMA Males **"
- ],
- [
- "GenEx_BXD_liverEt_RMA_0211",
- "GenEx BXD EtOH Liver Affy M430 2.0 (Feb11) RMA Both Sexes **"
- ],
- [
- "SUH_Liv_RMA_0611",
- "SUH BXD Liver Affy Mouse Gene 1.0 ST (Jun11) RMA **"
- ],
- [
- "OXUKHS_ILMLiver_RI0510",
- "OX UK HS ILM6v1.1 Liver (May 2010) RankInv"
- ],
- [
- "HXB_Liver_1208",
- "MDC/CAS/UCL Liver 230v2 (Dec08) RMA"
- ],
- [
- "UCLA_CTB6B6CTF2_LIVER_MALE",
- "UCLA CTB6B6CTF2 Liver Male mlratio **"
- ],
- [
"UCLA_BHF2_LIVER_MALE",
"UCLA BHF2 Liver Male mlratio"
],
[
- "UCLA_CTB6B6CTF2_LIVER_FEMALE",
- "UCLA CTB6B6CTF2 Liver Female mlratio **"
- ],
- [
- "UCLA_BHHBF2_LIVER_FEMALE",
- "UCLA BHHBF2 Liver Female Only"
- ],
- [
- "UCLA_BHHBF2_LIVER_MALE",
- "UCLA BHHBF2 Liver Male Only"
- ],
- [
"UCLA_BHF2_LIVER_FEMALE",
"UCLA BHF2 Liver Female mlratio"
],
[
- "UCLA_BHHBF2_LIVER_2005",
- "UCLA BHHBF2 Liver (2005) mlratio **"
- ],
- [
- "UCLA_CTB6B6CTF2_LIVER_2005",
- "UCLA CTB6/B6CTF2 Liver (2005) mlratio **"
- ],
- [
"UCLA_BHF2_LIVER_0605",
"UCLA BHF2 Liver (June05) mlratio"
- ],
- [
- "UCLA_BDF2_LIVER_1999",
- "UCLA BDF2 Liver (1999) mlratio"
- ],
- [
- "LVF2_M_0704_R",
- "(B6 x BTBR)F2-ob/ob Liver mRNA M430 (Jul04) RMA"
- ],
- [
- "LVF2_M_0704_M",
- "(B6 x BTBR)F2-ob/ob Liver mRNA M430 (Jul04) MAS5"
- ],
- [
- "HLCF_0311",
- "GSE9588 Human Liver Normal (Mar11) Females"
]
],
"Muscle": [
[
- "EPFLMouseMuscleRMA1211",
- "EPFL/LISP BXD Muscle Affy Mouse Gene 1.0 ST (Dec11) RMA **"
- ],
- [
- "EPFLMouseMuscleCDRMA1211",
- "EPFL/LISP BXD CD Muscle Affy Mouse Gene 1.0 ST (Dec11) RMA **"
- ],
- [
- "EPFLMouseMuscleHFDRMA1211",
- "EPFL/LISP BXD HFD Muscle Affy Mouse Gene 1.0 ST (Dec11) RMA **"
- ],
- [
- "UCLA_CTB6B6CTF2_MUSCLE_FEMALE",
- "UCLA CTB6B6CTF2 Muscle Female mlratio **"
- ],
- [
- "UCLA_CTB6B6CTF2_MUSCLE_MALE",
- "UCLA CTB6B6CTF2 Muscle Male mlratio **"
- ],
- [
- "UCLA_BHHBF2_MUSCLE_FEMALE",
- "UCLA BHHBF2 Muscle Female Only"
- ],
- [
- "UCLA_BHHBF2_MUSCLE_MALE",
- "UCLA BHHBF2 Muscle Male Only"
- ],
- [
"UCLA_BHF2_MUSCLE_MALE",
"UCLA BHF2 Muscle Male mlratio **"
],
@@ -2564,14 +836,6 @@
"UCLA BHF2 Muscle Female mlratio **"
],
[
- "UCLA_BHHBF2_MUSCLE_2005",
- "UCLA BHHBF2 Muscle (2005) mlratio **"
- ],
- [
- "UCLA_CTB6B6CTF2_MUSCLE_2005",
- "UCLA CTB6/B6CTF2 Muscle (2005) mlratio **"
- ],
- [
"UCLA_BHF2_MUSCLE_0605",
"UCLA BHF2 Muscle (June05) mlratio **"
]
@@ -2586,22 +850,6 @@
"BHHBF2": {
"Adipose": [
[
- "UCLA_BHF2_ADIPOSE_MALE",
- "UCLA BHF2 Adipose Male mlratio"
- ],
- [
- "UCLA_CTB6B6CTF2_ADIPOSE_MALE",
- "UCLA CTB6B6CTF2 Adipose Male mlratio **"
- ],
- [
- "UCLA_BHF2_ADIPOSE_FEMALE",
- "UCLA BHF2 Adipose Female mlratio"
- ],
- [
- "UCLA_CTB6B6CTF2_ADIPOSE_FEMALE",
- "UCLA CTB6B6CTF2 Adipose Female mlratio **"
- ],
- [
"UCLA_BHHBF2_ADIPOSE_MALE",
"UCLA BHHBF2 Adipose Male Only"
],
@@ -2612,144 +860,20 @@
[
"UCLA_BHHBF2_ADIPOSE_2005",
"UCLA BHHBF2 Adipose (2005) mlratio **"
- ],
- [
- "UCLA_CTB6B6CTF2_ADIPOSE_2005",
- "UCLA CTB6/B6CTF2 Adipose (2005) mlratio **"
- ],
- [
- "UCLA_BHF2_ADIPOSE_0605",
- "UCLA BHF2 Adipose (June05) mlratio"
]
],
"Brain": [
[
- "GSE15222_F_N_RI_0409",
- "GSE15222 Human Brain Normal Myers (Apr09) RankInv"
- ],
- [
- "GSE15222_F_A_RI_0409",
- "GSE15222 Human Brain Alzheimer Myers (Apr09) RankInv"
- ],
- [
- "GSE5281_F_RMA_N_0709",
- "GSE5281 Human Brain Normal Full Liang (Jul09) RMA"
- ],
- [
- "GSE5281_F_RMA_Alzh_0709",
- "GSE5281 Human Brain Alzheimer Full Liang (Jul09) RMA"
- ],
- [
- "INIA_MacFas_brain_RMA_0110",
- "INIA Macaca fasicularis Brain (Jan10) RMA **"
- ],
- [
- "GSE15222_F_RI_0409",
- "GSE15222 Human Brain Myers (Apr09) RankInv"
- ],
- [
- "GSE5281_F_RMA0709",
- "GSE5281 Human Brain Full Liang (Jul09) RMA"
- ],
- [
- "GSE5281_RMA0709",
- "GSE5281 Human Brain Best 102 Liang (Jul09) RMA"
- ],
- [
- "UCLA_CTB6B6CTF2_BRAIN_FEMALE",
- "UCLA CTB6B6CTF2 Brain Female mlratio **"
- ],
- [
- "UCLA_CTB6B6CTF2_BRAIN_MALE",
- "UCLA CTB6B6CTF2 Brain Male mlratio **"
- ],
- [
- "UCLA_BHF2_BRAIN_MALE",
- "UCLA BHF2 Brain Male mlratio"
- ],
- [
- "UCLA_BHF2_BRAIN_FEMALE",
- "UCLA BHF2 Brain Female mlratio"
+ "UCLA_BHHBF2_BRAIN_MALE",
+ "UCLA BHHBF2 Brain Male Only"
],
[
"UCLA_BHHBF2_BRAIN_FEMALE",
"UCLA BHHBF2 Brain Female Only"
],
[
- "UCLA_BHHBF2_BRAIN_MALE",
- "UCLA BHHBF2 Brain Male Only"
- ],
- [
"UCLA_BHHBF2_BRAIN_2005",
"UCLA BHHBF2 Brain (2005) mlratio **"
- ],
- [
- "UCLA_CTB6B6CTF2_BRAIN_2005",
- "UCLA CTB6/B6CTF2 Brain (2005) mlratio **"
- ],
- [
- "UCLA_BHF2_BRAIN_0605",
- "UCLA BHF2 Brain (June05) mlratio"
- ],
- [
- "BR_M2_1106_R",
- "UCHSC BXD Whole Brain M430 2.0 (Nov06) RMA"
- ],
- [
- "IBR_M_0606_R",
- "INIA Brain mRNA M430 (Jun06) RMA"
- ],
- [
- "IBR_M_0106_P",
- "INIA Brain mRNA M430 (Jan06) PDNN"
- ],
- [
- "IBR_M_0106_R",
- "INIA Brain mRNA M430 (Jan06) RMA"
- ],
- [
- "BR_U_1105_P",
- "UTHSC Brain mRNA U74Av2 (Nov05) PDNN"
- ],
- [
- "BR_U_0805_M",
- "UTHSC Brain mRNA U74Av2 (Aug05) MAS5"
- ],
- [
- "BR_U_0805_P",
- "UTHSC Brain mRNA U74Av2 (Aug05) PDNN"
- ],
- [
- "BR_U_0805_R",
- "UTHSC Brain mRNA U74Av2 (Aug05) RMA"
- ],
- [
- "BRF2_M_0805_R",
- "OHSU/VA B6D2F2 Brain mRNA M430 (Aug05) RMA"
- ],
- [
- "BRF2_M_0805_P",
- "OHSU/VA B6D2F2 Brain mRNA M430 (Aug05) PDNN"
- ],
- [
- "BRF2_M_0805_M",
- "OHSU/VA B6D2F2 Brain mRNA M430 (Aug05) MAS5"
- ],
- [
- "BRF2_M_0304_P",
- "OHSU/VA B6D2F2 Brain mRNA M430A (Mar04) PDNN"
- ],
- [
- "BRF2_M_0304_R",
- "OHSU/VA B6D2F2 Brain mRNA M430A (Mar04) RMA"
- ],
- [
- "BRF2_M_0304_M",
- "OHSU/VA B6D2F2 Brain mRNA M430A (Mar04) MAS5"
- ],
- [
- "CB_M_0204_P",
- "INIA Brain mRNA M430 (Feb04) PDNN"
]
],
"Genotypes": [
@@ -2760,178 +884,30 @@
],
"Liver": [
[
- "GSE16780_UCLA_ML0911",
- "GSE16780 UCLA Hybrid MDP Liver Affy HT M430A (Sep11) RMA"
- ],
- [
- "JAX_CSB_L_0711",
- "JAX Liver Affy M430 2.0 (Jul11) MDP"
- ],
- [
- "JAX_CSB_L_HF_0711",
- "JAX Liver HF Affy M430 2.0 (Jul11) MDP"
- ],
- [
- "JAX_CSB_L_6C_0711",
- "JAX Liver 6C Affy M430 2.0 (Jul11) MDP"
- ],
- [
- "HLC_0311",
- "GSE9588 Human Liver Normal (Mar11) Both Sexes"
- ],
- [
- "HLCM_0311",
- "GSE9588 Human Liver Normal (Mar11) Males"
- ],
- [
- "LV_G_0106_F",
- "UNC Agilent G4121A Liver LOWESS Stanford (Jan06) Females"
- ],
- [
- "LV_G_0106_M",
- "UNC Agilent G4121A Liver LOWESS Stanford (Jan06) Males"
- ],
- [
- "LV_G_0106_B",
- "UNC Agilent G4121A Liver LOWESS Stanford (Jan06) Both Sexes"
- ],
- [
- "GenEx_BXD_liverSal_RMA_F_0211",
- "GenEx BXD Sal Liver Affy M430 2.0 (Feb11) RMA Females **"
- ],
- [
- "GenEx_BXD_liverSal_RMA_M_0211",
- "GenEx BXD Sal Liver Affy M430 2.0 (Feb11) RMA Males **"
- ],
- [
- "GenEx_BXD_liverSal_RMA_0211",
- "GenEx BXD Sal Liver Affy M430 2.0 (Feb11) RMA Both Sexes **"
- ],
- [
- "GenEx_BXD_liverEt_RMA_F_0211",
- "GenEx BXD EtOH Liver Affy M430 2.0 (Feb11) RMA Females **"
- ],
- [
- "GenEx_BXD_liverEt_RMA_M_0211",
- "GenEx BXD EtOH Liver Affy M430 2.0 (Feb11) RMA Males **"
- ],
- [
- "GenEx_BXD_liverEt_RMA_0211",
- "GenEx BXD EtOH Liver Affy M430 2.0 (Feb11) RMA Both Sexes **"
- ],
- [
- "SUH_Liv_RMA_0611",
- "SUH BXD Liver Affy Mouse Gene 1.0 ST (Jun11) RMA **"
- ],
- [
- "OXUKHS_ILMLiver_RI0510",
- "OX UK HS ILM6v1.1 Liver (May 2010) RankInv"
- ],
- [
- "HXB_Liver_1208",
- "MDC/CAS/UCL Liver 230v2 (Dec08) RMA"
- ],
- [
- "UCLA_CTB6B6CTF2_LIVER_MALE",
- "UCLA CTB6B6CTF2 Liver Male mlratio **"
- ],
- [
- "UCLA_BHF2_LIVER_MALE",
- "UCLA BHF2 Liver Male mlratio"
- ],
- [
- "UCLA_CTB6B6CTF2_LIVER_FEMALE",
- "UCLA CTB6B6CTF2 Liver Female mlratio **"
- ],
- [
- "UCLA_BHHBF2_LIVER_FEMALE",
- "UCLA BHHBF2 Liver Female Only"
- ],
- [
"UCLA_BHHBF2_LIVER_MALE",
"UCLA BHHBF2 Liver Male Only"
],
[
- "UCLA_BHF2_LIVER_FEMALE",
- "UCLA BHF2 Liver Female mlratio"
+ "UCLA_BHHBF2_LIVER_FEMALE",
+ "UCLA BHHBF2 Liver Female Only"
],
[
"UCLA_BHHBF2_LIVER_2005",
"UCLA BHHBF2 Liver (2005) mlratio **"
- ],
- [
- "UCLA_CTB6B6CTF2_LIVER_2005",
- "UCLA CTB6/B6CTF2 Liver (2005) mlratio **"
- ],
- [
- "UCLA_BHF2_LIVER_0605",
- "UCLA BHF2 Liver (June05) mlratio"
- ],
- [
- "UCLA_BDF2_LIVER_1999",
- "UCLA BDF2 Liver (1999) mlratio"
- ],
- [
- "LVF2_M_0704_R",
- "(B6 x BTBR)F2-ob/ob Liver mRNA M430 (Jul04) RMA"
- ],
- [
- "LVF2_M_0704_M",
- "(B6 x BTBR)F2-ob/ob Liver mRNA M430 (Jul04) MAS5"
- ],
- [
- "HLCF_0311",
- "GSE9588 Human Liver Normal (Mar11) Females"
]
],
"Muscle": [
[
- "EPFLMouseMuscleRMA1211",
- "EPFL/LISP BXD Muscle Affy Mouse Gene 1.0 ST (Dec11) RMA **"
- ],
- [
- "EPFLMouseMuscleCDRMA1211",
- "EPFL/LISP BXD CD Muscle Affy Mouse Gene 1.0 ST (Dec11) RMA **"
- ],
- [
- "EPFLMouseMuscleHFDRMA1211",
- "EPFL/LISP BXD HFD Muscle Affy Mouse Gene 1.0 ST (Dec11) RMA **"
- ],
- [
- "UCLA_CTB6B6CTF2_MUSCLE_FEMALE",
- "UCLA CTB6B6CTF2 Muscle Female mlratio **"
- ],
- [
- "UCLA_CTB6B6CTF2_MUSCLE_MALE",
- "UCLA CTB6B6CTF2 Muscle Male mlratio **"
- ],
- [
- "UCLA_BHHBF2_MUSCLE_FEMALE",
- "UCLA BHHBF2 Muscle Female Only"
- ],
- [
"UCLA_BHHBF2_MUSCLE_MALE",
"UCLA BHHBF2 Muscle Male Only"
],
[
- "UCLA_BHF2_MUSCLE_MALE",
- "UCLA BHF2 Muscle Male mlratio **"
- ],
- [
- "UCLA_BHF2_MUSCLE_FEMALE",
- "UCLA BHF2 Muscle Female mlratio **"
+ "UCLA_BHHBF2_MUSCLE_FEMALE",
+ "UCLA BHHBF2 Muscle Female Only"
],
[
"UCLA_BHHBF2_MUSCLE_2005",
"UCLA BHHBF2 Muscle (2005) mlratio **"
- ],
- [
- "UCLA_CTB6B6CTF2_MUSCLE_2005",
- "UCLA CTB6/B6CTF2 Muscle (2005) mlratio **"
- ],
- [
- "UCLA_BHF2_MUSCLE_0605",
- "UCLA BHF2 Muscle (June05) mlratio **"
]
],
"Phenotypes": [
@@ -2944,10 +920,6 @@
"BXD": {
"Amygdala": [
[
- "KIN_YSM_AMY_0711",
- "KIN/YSM Human AMY Affy Hu-Exon 1.0 ST (Jul11) Quantile **"
- ],
- [
"INIA_AmgCoh_0311",
"INIA Amygdala Cohort Affy MoGene 1.0 ST (Mar11) RMA"
],
@@ -2962,102 +934,14 @@
[
"INIA_Amg_BLA_RMA_F_1110",
"INIA Amygdala Affy MoGene 1.0 ST (Nov10) RMA Female"
- ],
- [
- "INIA_MacFas_AMGc_RMA_0110",
- "INIA Macaca fasicularis Amygdala control (Jan10) RMA **"
- ],
- [
- "INIA_MacFas_AMGe_RMA_0110",
- "INIA Macaca fasicularis Amygdala ethanol (Jan10) RMA **"
]
],
"Brain": [
[
- "GSE15222_F_N_RI_0409",
- "GSE15222 Human Brain Normal Myers (Apr09) RankInv"
- ],
- [
- "GSE15222_F_A_RI_0409",
- "GSE15222 Human Brain Alzheimer Myers (Apr09) RankInv"
- ],
- [
- "GSE5281_F_RMA_N_0709",
- "GSE5281 Human Brain Normal Full Liang (Jul09) RMA"
- ],
- [
- "GSE5281_F_RMA_Alzh_0709",
- "GSE5281 Human Brain Alzheimer Full Liang (Jul09) RMA"
- ],
- [
- "INIA_MacFas_brain_RMA_0110",
- "INIA Macaca fasicularis Brain (Jan10) RMA **"
- ],
- [
- "GSE15222_F_RI_0409",
- "GSE15222 Human Brain Myers (Apr09) RankInv"
- ],
- [
- "GSE5281_F_RMA0709",
- "GSE5281 Human Brain Full Liang (Jul09) RMA"
- ],
- [
- "GSE5281_RMA0709",
- "GSE5281 Human Brain Best 102 Liang (Jul09) RMA"
- ],
- [
- "UCLA_CTB6B6CTF2_BRAIN_FEMALE",
- "UCLA CTB6B6CTF2 Brain Female mlratio **"
- ],
- [
- "UCLA_CTB6B6CTF2_BRAIN_MALE",
- "UCLA CTB6B6CTF2 Brain Male mlratio **"
- ],
- [
- "UCLA_BHF2_BRAIN_MALE",
- "UCLA BHF2 Brain Male mlratio"
- ],
- [
- "UCLA_BHF2_BRAIN_FEMALE",
- "UCLA BHF2 Brain Female mlratio"
- ],
- [
- "UCLA_BHHBF2_BRAIN_FEMALE",
- "UCLA BHHBF2 Brain Female Only"
- ],
- [
- "UCLA_BHHBF2_BRAIN_MALE",
- "UCLA BHHBF2 Brain Male Only"
- ],
- [
- "UCLA_BHHBF2_BRAIN_2005",
- "UCLA BHHBF2 Brain (2005) mlratio **"
- ],
- [
- "UCLA_CTB6B6CTF2_BRAIN_2005",
- "UCLA CTB6/B6CTF2 Brain (2005) mlratio **"
- ],
- [
- "UCLA_BHF2_BRAIN_0605",
- "UCLA BHF2 Brain (June05) mlratio"
- ],
- [
"BR_M2_1106_R",
"UCHSC BXD Whole Brain M430 2.0 (Nov06) RMA"
],
[
- "IBR_M_0606_R",
- "INIA Brain mRNA M430 (Jun06) RMA"
- ],
- [
- "IBR_M_0106_P",
- "INIA Brain mRNA M430 (Jan06) PDNN"
- ],
- [
- "IBR_M_0106_R",
- "INIA Brain mRNA M430 (Jan06) RMA"
- ],
- [
"BR_U_1105_P",
"UTHSC Brain mRNA U74Av2 (Nov05) PDNN"
],
@@ -3066,36 +950,12 @@
"UTHSC Brain mRNA U74Av2 (Aug05) MAS5"
],
[
- "BR_U_0805_P",
- "UTHSC Brain mRNA U74Av2 (Aug05) PDNN"
- ],
- [
"BR_U_0805_R",
"UTHSC Brain mRNA U74Av2 (Aug05) RMA"
],
[
- "BRF2_M_0805_R",
- "OHSU/VA B6D2F2 Brain mRNA M430 (Aug05) RMA"
- ],
- [
- "BRF2_M_0805_P",
- "OHSU/VA B6D2F2 Brain mRNA M430 (Aug05) PDNN"
- ],
- [
- "BRF2_M_0805_M",
- "OHSU/VA B6D2F2 Brain mRNA M430 (Aug05) MAS5"
- ],
- [
- "BRF2_M_0304_P",
- "OHSU/VA B6D2F2 Brain mRNA M430A (Mar04) PDNN"
- ],
- [
- "BRF2_M_0304_R",
- "OHSU/VA B6D2F2 Brain mRNA M430A (Mar04) RMA"
- ],
- [
- "BRF2_M_0304_M",
- "OHSU/VA B6D2F2 Brain mRNA M430A (Mar04) MAS5"
+ "BR_U_0805_P",
+ "UTHSC Brain mRNA U74Av2 (Aug05) PDNN"
],
[
"CB_M_0204_P",
@@ -3108,76 +968,24 @@
"UCLA BXD and BXH Cartilage v2"
],
[
- "UCLA_BXHBXD_CARTILAGE_V2",
- "UCLA BXH and BXD Cartilage v2"
- ],
- [
"UCLA_BXDBXH_CARTILAGE",
"UCLA BXD and BXH Cartilage"
],
[
- "UCLA_BXHBXD_CARTILAGE",
- "UCLA BXH and BXD Cartilage"
- ],
- [
"UCLA_BXD_CARTILAGE",
"UCLA BXD Cartilage"
- ],
- [
- "UCLA_BXH_CARTILAGE",
- "UCLA BXH Cartilage"
]
],
"Cerebellum": [
[
- "HBTRC-MLC_0611",
- "HBTRC-MLC Human Cerebellum Agilent (Jun11) mlratio"
- ],
- [
- "HBTRC-MLC_N_0611",
- "HBTRC-MLC Human Cerebellum Agilent Normal (Jun11) mlratio"
- ],
- [
- "HBTRC-MLC_AD_0611",
- "HBTRC-MLC Human Cerebellum Agilent AD (Jun11) mlratio"
- ],
- [
- "HBTRC-MLC_HD_0611",
- "HBTRC-MLC Human Cerebellum Agilent HD (Jun11) mlratio"
- ],
- [
- "GCB_M2_0505_M",
- "GE-NIAAA Cerebellum mRNA M430v2 (May05) MAS5"
- ],
- [
- "GCB_M2_0505_R",
- "GE-NIAAA Cerebellum mRNA M430v2 (May05) RMA"
- ],
- [
- "GCB_M2_0505_P",
- "GE-NIAAA Cerebellum mRNA M430v2 (May05) PDNN"
- ],
- [
- "CB_M_0305_R",
- "SJUT Cerebellum mRNA M430 (Mar05) RMA"
- ],
- [
- "CB_M_0305_M",
- "SJUT Cerebellum mRNA M430 (Mar05) MAS5"
- ],
- [
- "CB_M_0305_P",
- "SJUT Cerebellum mRNA M430 (Mar05) PDNN"
+ "CB_M_1004_M",
+ "SJUT Cerebellum mRNA M430 (Oct04) MAS5"
],
[
"CB_M_1004_R",
"SJUT Cerebellum mRNA M430 (Oct04) RMA"
],
[
- "CB_M_1004_M",
- "SJUT Cerebellum mRNA M430 (Oct04) MAS5"
- ],
- [
"CB_M_1004_P",
"SJUT Cerebellum mRNA M430 (Oct04) PDNN"
],
@@ -3188,10 +996,6 @@
],
"Eye": [
[
- "Eye_AXBXA_1008_RankInv",
- "Eye AXBXA Illumina V6.2(Oct08) RankInv Beta"
- ],
- [
"Eye_M2_0908_R",
"Eye M430v2 (Sep08) RMA"
],
@@ -3204,24 +1008,20 @@
"Eye M430v2 WT Gpnmb (Sep08) RMA **"
],
[
- "Eye_M2_0908_WTWT",
- "Eye M430v2 WT WT (Sep08) RMA **"
- ],
- [
"Eye_M2_0908_R_WT",
"Eye M430v2 WT Tyrp1 (Sep08) RMA **"
],
[
+ "Eye_M2_0908_WTWT",
+ "Eye M430v2 WT WT (Sep08) RMA **"
+ ],
+ [
"Eye_M2_0908_R_MT",
"Eye M430v2 Mutant Tyrp1 (Sep08) RMA **"
],
[
"BXD_GLA_0911",
"BXD Glaucoma Affy M430 2.0 Trial (Sep11) RMA **"
- ],
- [
- "UIOWA_Eye_RMA_0906",
- "UIOWA Eye mRNA RAE230v2 (Sep06) RMA"
]
],
"Genotypes": [
@@ -3270,62 +1070,6 @@
],
"Hippocampus": [
[
- "KIN_YSM_HIP_0711",
- "KIN/YSM Human HIP Affy Hu-Exon 1.0 ST (Jul11) Quantile **"
- ],
- [
- "UMUTAffyExon_0209_RMA_MDP",
- "UMUTAffy Hippocampus Exon (Feb09) RMA MDP"
- ],
- [
- "HC_M2_0606_MDP",
- "Hippocampus Consortium M430v2 (Jun06) RMA MDP"
- ],
- [
- "OXUKHS_ILMHipp_RI0510",
- "OX UK HS ILM6v1.1 Hippocampus (May 2010) RankInv"
- ],
- [
- "INIA_MacFas_Hc_RMA_0110",
- "INIA Macaca fasicularis Hippocampus control (Jan10) RMA **"
- ],
- [
- "INIA_MacFas_He_RMA_0110",
- "INIA Macaca fasicularis Hippocampus ethanol (Jan10) RMA **"
- ],
- [
- "UT_HippRatEx_RMA_0709",
- "UT Hippocampus Affy RaEx 1.0 Exon (Jul09) RMA"
- ],
- [
- "Illum_LXS_Hipp_loess0807",
- "Hippocampus Illumina (Aug07) LOESS"
- ],
- [
- "Illum_LXS_Hipp_loess_nb0807",
- "Hippocampus Illumina (Aug07) LOESS_NB"
- ],
- [
- "Illum_LXS_Hipp_quant0807",
- "Hippocampus Illumina (Aug07) QUANT"
- ],
- [
- "Illum_LXS_Hipp_quant_nb0807",
- "Hippocampus Illumina (Aug07) QUANT_NB"
- ],
- [
- "Illum_LXS_Hipp_rsn0807",
- "Hippocampus Illumina (Aug07) RSN"
- ],
- [
- "Illum_LXS_Hipp_rsn_nb0807",
- "Hippocampus Illumina (Aug07) RSN_NB"
- ],
- [
- "Hipp_Illumina_RankInv_0507",
- "Hippocampus Illumina (May07) RankInv"
- ],
- [
"HC_M2_0606_P",
"Hippocampus Consortium M430v2 (Jun06) PDNN"
],
@@ -3338,14 +1082,6 @@
"Hippocampus Consortium M430v2 (Jun06) RMA"
],
[
- "HC_M2CB_1205_R",
- "Hippocampus Consortium M430v2 CXB (Dec05) RMA"
- ],
- [
- "HC_M2CB_1205_P",
- "Hippocampus Consortium M430v2 CXB (Dec05) PDNN"
- ],
- [
"UMUTAffyExon_0209_RMA",
"UMUTAffy Hippocampus Exon (Feb09) RMA"
],
@@ -3368,26 +1104,6 @@
[
"UT_ILM_BXD_hipp_RSE_0909",
"UTHSC Hippocampus Illumina v6.1 RSE (Sep09) RankInv"
- ],
- [
- "Illum_LXS_Hipp_RSE_1008",
- "Hippocampus Illumina RSE (Oct08) RankInv beta"
- ],
- [
- "Illum_LXS_Hipp_NOS_1008",
- "Hippocampus Illumina NOS (Oct08) RankInv beta"
- ],
- [
- "Illum_LXS_Hipp_NOE_1008",
- "Hippocampus Illumina NOE (Oct08) RankInv beta"
- ],
- [
- "Illum_LXS_Hipp_RSS_1008",
- "Hippocampus Illumina RSS (Oct08) RankInv beta"
- ],
- [
- "Illum_LXS_Hipp_NON_1008",
- "Hippocampus Illumina NON (Oct08) RankInv beta"
]
],
"Hypothalamus": [
@@ -3428,18 +1144,6 @@
[
"MA_M2_0706_R",
"Mouse Kidney M430v2 (Jul06) RMA"
- ],
- [
- "KI_2A_0405_M",
- "MDC/CAS/ICL Kidney 230A (Apr05) MAS5"
- ],
- [
- "KI_2A_0405_Rz",
- "MDC/CAS/ICL Kidney 230A (Apr05) RMA 2z+8"
- ],
- [
- "KI_2A_0405_R",
- "MDC/CAS/ICL Kidney 230A (Apr05) RMA"
]
],
"Leucocytes": [
@@ -3454,38 +1158,6 @@
"GSE16780 UCLA Hybrid MDP Liver Affy HT M430A (Sep11) RMA"
],
[
- "JAX_CSB_L_0711",
- "JAX Liver Affy M430 2.0 (Jul11) MDP"
- ],
- [
- "JAX_CSB_L_HF_0711",
- "JAX Liver HF Affy M430 2.0 (Jul11) MDP"
- ],
- [
- "JAX_CSB_L_6C_0711",
- "JAX Liver 6C Affy M430 2.0 (Jul11) MDP"
- ],
- [
- "HLC_0311",
- "GSE9588 Human Liver Normal (Mar11) Both Sexes"
- ],
- [
- "HLCM_0311",
- "GSE9588 Human Liver Normal (Mar11) Males"
- ],
- [
- "LV_G_0106_F",
- "UNC Agilent G4121A Liver LOWESS Stanford (Jan06) Females"
- ],
- [
- "LV_G_0106_M",
- "UNC Agilent G4121A Liver LOWESS Stanford (Jan06) Males"
- ],
- [
- "LV_G_0106_B",
- "UNC Agilent G4121A Liver LOWESS Stanford (Jan06) Both Sexes"
- ],
- [
"GenEx_BXD_liverSal_RMA_F_0211",
"GenEx BXD Sal Liver Affy M430 2.0 (Feb11) RMA Females **"
],
@@ -3512,74 +1184,10 @@
[
"SUH_Liv_RMA_0611",
"SUH BXD Liver Affy Mouse Gene 1.0 ST (Jun11) RMA **"
- ],
- [
- "OXUKHS_ILMLiver_RI0510",
- "OX UK HS ILM6v1.1 Liver (May 2010) RankInv"
- ],
- [
- "HXB_Liver_1208",
- "MDC/CAS/UCL Liver 230v2 (Dec08) RMA"
- ],
- [
- "UCLA_CTB6B6CTF2_LIVER_MALE",
- "UCLA CTB6B6CTF2 Liver Male mlratio **"
- ],
- [
- "UCLA_BHF2_LIVER_MALE",
- "UCLA BHF2 Liver Male mlratio"
- ],
- [
- "UCLA_CTB6B6CTF2_LIVER_FEMALE",
- "UCLA CTB6B6CTF2 Liver Female mlratio **"
- ],
- [
- "UCLA_BHHBF2_LIVER_FEMALE",
- "UCLA BHHBF2 Liver Female Only"
- ],
- [
- "UCLA_BHHBF2_LIVER_MALE",
- "UCLA BHHBF2 Liver Male Only"
- ],
- [
- "UCLA_BHF2_LIVER_FEMALE",
- "UCLA BHF2 Liver Female mlratio"
- ],
- [
- "UCLA_BHHBF2_LIVER_2005",
- "UCLA BHHBF2 Liver (2005) mlratio **"
- ],
- [
- "UCLA_CTB6B6CTF2_LIVER_2005",
- "UCLA CTB6/B6CTF2 Liver (2005) mlratio **"
- ],
- [
- "UCLA_BHF2_LIVER_0605",
- "UCLA BHF2 Liver (June05) mlratio"
- ],
- [
- "UCLA_BDF2_LIVER_1999",
- "UCLA BDF2 Liver (1999) mlratio"
- ],
- [
- "LVF2_M_0704_R",
- "(B6 x BTBR)F2-ob/ob Liver mRNA M430 (Jul04) RMA"
- ],
- [
- "LVF2_M_0704_M",
- "(B6 x BTBR)F2-ob/ob Liver mRNA M430 (Jul04) MAS5"
- ],
- [
- "HLCF_0311",
- "GSE9588 Human Liver Normal (Mar11) Females"
]
],
"Lung": [
[
- "OXUKHS_ILMLung_RI0510",
- "OX UK HS ILM6v1.1 Lung (May 2010) RankInv"
- ],
- [
"HZI_0408_R",
"HZI Lung M430v2 (Apr08) RMA"
],
@@ -3600,48 +1208,12 @@
"EPFL/LISP BXD Muscle Affy Mouse Gene 1.0 ST (Dec11) RMA **"
],
[
- "EPFLMouseMuscleCDRMA1211",
- "EPFL/LISP BXD CD Muscle Affy Mouse Gene 1.0 ST (Dec11) RMA **"
- ],
- [
"EPFLMouseMuscleHFDRMA1211",
"EPFL/LISP BXD HFD Muscle Affy Mouse Gene 1.0 ST (Dec11) RMA **"
],
[
- "UCLA_CTB6B6CTF2_MUSCLE_FEMALE",
- "UCLA CTB6B6CTF2 Muscle Female mlratio **"
- ],
- [
- "UCLA_CTB6B6CTF2_MUSCLE_MALE",
- "UCLA CTB6B6CTF2 Muscle Male mlratio **"
- ],
- [
- "UCLA_BHHBF2_MUSCLE_FEMALE",
- "UCLA BHHBF2 Muscle Female Only"
- ],
- [
- "UCLA_BHHBF2_MUSCLE_MALE",
- "UCLA BHHBF2 Muscle Male Only"
- ],
- [
- "UCLA_BHF2_MUSCLE_MALE",
- "UCLA BHF2 Muscle Male mlratio **"
- ],
- [
- "UCLA_BHF2_MUSCLE_FEMALE",
- "UCLA BHF2 Muscle Female mlratio **"
- ],
- [
- "UCLA_BHHBF2_MUSCLE_2005",
- "UCLA BHHBF2 Muscle (2005) mlratio **"
- ],
- [
- "UCLA_CTB6B6CTF2_MUSCLE_2005",
- "UCLA CTB6/B6CTF2 Muscle (2005) mlratio **"
- ],
- [
- "UCLA_BHF2_MUSCLE_0605",
- "UCLA BHF2 Muscle (June05) mlratio **"
+ "EPFLMouseMuscleCDRMA1211",
+ "EPFL/LISP BXD CD Muscle Affy Mouse Gene 1.0 ST (Dec11) RMA **"
]
],
"Neocortex": [
@@ -3676,14 +1248,6 @@
],
"Nucleus Accumbens": [
[
- "INIA_MacFas_Ac_RMA_0110",
- "INIA Macaca fasicularis Nucleus Accumbens control (Jan10) RMA **"
- ],
- [
- "INIA_MacFas_Ae_RMA_0110",
- "INIA Macaca fasicularis Nucleus Accumbens ethanol (Jan10) RMA **"
- ],
- [
"VCUSalo_1007_R",
"VCU BXD NA Sal M430 2.0 (Oct07) RMA"
],
@@ -3704,34 +1268,6 @@
],
"Prefrontal Cortex": [
[
- "HBTRC-MLPFC_0611",
- "HBTRC-MLC Human Prefrontal Cortex Agilent (Jun11) mlratio"
- ],
- [
- "HBTRC-MLPFC_N_0611",
- "HBTRC-MLC Human Prefrontal Cortex Agilent Normal (Jun11) mlratio"
- ],
- [
- "HBTRC-MLPFC_AD_0611",
- "HBTRC-MLC Human Prefrontal Cortex Agilent AD (Jun11) mlratio"
- ],
- [
- "HBTRC-MLPFC_HD_0611",
- "HBTRC-MLC Human Prefrontal Cortex Agilent HD (Jun11) mlratio"
- ],
- [
- "INIA_MacFas_Pf_RMA_0110",
- "INIA Macaca fasicularis Prefrontal Cortex control (Jan10) RMA **"
- ],
- [
- "INIA_MacFas_PfE_RMA_0110",
- "INIA Macaca fasicularis Prefrontal Cortex ethanol (Jan10) RMA **"
- ],
- [
- "VCUSal_1006_R",
- "VCU BXD PFC Et vs Sal M430 2.0 (Dec06) Sscore"
- ],
- [
"VCUEtOH_1206_R",
"VCU BXD PFC EtOH M430 2.0 (Dec06) RMA"
],
@@ -3740,6 +1276,10 @@
"VCU BXD PFC Sal M430 2.0 (Dec06) RMA"
],
[
+ "VCUSal_1006_R",
+ "VCU BXD PFC Et vs Sal M430 2.0 (Dec06) Sscore"
+ ],
+ [
"VCU_PF_Air_0111_R",
"VCU BXD PFC CIE Air M430 2.0 (Jan11) RMA **"
],
@@ -3750,18 +1290,6 @@
[
"VCU_PF_AvE_0111_Ss",
"VCU BXD PFC EtOH vs CIE Air M430 2.0 (Jan11) Sscore **"
- ],
- [
- "VCUEt_vs_Sal_0806_R",
- "VCU LXS PFC Et vs Sal M430A 2.0 (Aug06) Sscore **"
- ],
- [
- "VCUEtOH_0806_R",
- "VCU LXS PFC EtOH M430A 2.0 (Aug06) RMA **"
- ],
- [
- "VCUSal_0806_R",
- "VCU LXS PFC Sal M430A 2.0 (Aug06) RMA"
]
],
"Retina": [
@@ -3778,6 +1306,10 @@
"ONC Retina Illumina V6.2 (Apr12) RankInv **"
],
[
+ "HEIONCvsCRetILM6_0911",
+ "HEI ONC vs Control Retina Illumina V6.2 (Sep11) RankInv **"
+ ],
+ [
"G2HEIONCRetILM6_0911",
"G2 HEI ONC Retina Illumina V6.2 (Sep11) RankInv **"
],
@@ -3786,10 +1318,6 @@
"HEI ONC Retina Illumina V6.2 (Sep11) RankInv **"
],
[
- "HEIONCvsCRetILM6_0911",
- "HEI ONC vs Control Retina Illumina V6.2 (Sep11) RankInv **"
- ],
- [
"ILM_Retina_BXD_F_RankInv1210",
"HEI Retina Females Illumina V6.2 (Dec10) RankInv **"
],
@@ -3826,10 +1354,6 @@
[
"UTK_BXDSpl_VST_0110",
"UTK Spleen ILM6.1 (Jan10) VST"
- ],
- [
- "STSPL_1107_R",
- "Stuart Spleen M430v2 (Nov07) RMA"
]
],
"Striatum": [
@@ -3842,14 +1366,6 @@
"BIDMC/UTHSC Dev Striatum P14 ILMv6.2 (Nov11) RankInv **"
],
[
- "KIN_YSM_STR_0711",
- "KIN/YSM Human STR Affy Hu-Exon 1.0 ST (Jul11) Quantile **"
- ],
- [
- "OHSU_HS-CC_ILMStr_0211",
- "OHSU HS-CC Striatum ILM6v1 (Feb11) RankInv"
- ],
- [
"UTHSC_Striatum_RankInv_1210",
"HQF BXD Striatum ILM6.1 (Dec10v2) RankInv"
],
@@ -3862,18 +1378,6 @@
"HQF BXD Striatum ILM6.1 (Nov07) RankInv"
],
[
- "SA_M2_0905_P",
- "OHSU/VA B6D2F2 Striatum M430v2 (Sep05) PDNN"
- ],
- [
- "SA_M2_0905_M",
- "OHSU/VA B6D2F2 Striatum M430v2 (Sep05) MAS5"
- ],
- [
- "SA_M2_0905_R",
- "OHSU/VA B6D2F2 Striatum M430v2 (Sep05) RMA"
- ],
- [
"SA_M2_0405_MC",
"HBP Rosen Striatum M430V2 (Apr05) MAS5 Clean"
],
@@ -3898,12 +1402,12 @@
"HQF Striatum Exon (Feb09) RMA"
],
[
- "DevStriatum_ILM6.2P3RInv_1110",
- "BIDMC/UTHSC Dev Striatum P3 ILMv6.2 (Nov10) RankInv **"
- ],
- [
"DevStriatum_ILM6.2P14RInv_1110",
"BIDMC/UTHSC Dev Striatum P14 ILMv6.2 (Nov10) RankInv **"
+ ],
+ [
+ "DevStriatum_ILM6.2P3RInv_1110",
+ "BIDMC/UTHSC Dev Striatum P3 ILMv6.2 (Nov10) RankInv **"
]
],
"T Cell (helper)": [
@@ -3926,42 +1430,30 @@
],
"Ventral Tegmental Area": [
[
- "VCUEtvsSal_0609_R",
- "VCU BXD VTA Et vs Sal M430 2.0 (Jun09) Sscore **"
- ],
- [
"VCUEtOH_0609_R",
"VCU BXD VTA EtOH M430 2.0 (Jun09) RMA **"
],
[
"VCUSal_0609_R",
"VCU BXD VTA Sal M430 2.0 (Jun09) RMA **"
+ ],
+ [
+ "VCUEtvsSal_0609_R",
+ "VCU BXD VTA Et vs Sal M430 2.0 (Jun09) Sscore **"
]
]
},
"BXH": {
"Cartilage": [
[
- "UCLA_BXDBXH_CARTILAGE_V2",
- "UCLA BXD and BXH Cartilage v2"
- ],
- [
"UCLA_BXHBXD_CARTILAGE_V2",
"UCLA BXH and BXD Cartilage v2"
],
[
- "UCLA_BXDBXH_CARTILAGE",
- "UCLA BXD and BXH Cartilage"
- ],
- [
"UCLA_BXHBXD_CARTILAGE",
"UCLA BXH and BXD Cartilage"
],
[
- "UCLA_BXD_CARTILAGE",
- "UCLA BXD Cartilage"
- ],
- [
"UCLA_BXH_CARTILAGE",
"UCLA BXH Cartilage"
]
@@ -3982,170 +1474,30 @@
"CTB6F2": {
"Adipose": [
[
- "UCLA_BHF2_ADIPOSE_MALE",
- "UCLA BHF2 Adipose Male mlratio"
- ],
- [
"UCLA_CTB6B6CTF2_ADIPOSE_MALE",
"UCLA CTB6B6CTF2 Adipose Male mlratio **"
],
[
- "UCLA_BHF2_ADIPOSE_FEMALE",
- "UCLA BHF2 Adipose Female mlratio"
- ],
- [
"UCLA_CTB6B6CTF2_ADIPOSE_FEMALE",
"UCLA CTB6B6CTF2 Adipose Female mlratio **"
],
[
- "UCLA_BHHBF2_ADIPOSE_MALE",
- "UCLA BHHBF2 Adipose Male Only"
- ],
- [
- "UCLA_BHHBF2_ADIPOSE_FEMALE",
- "UCLA BHHBF2 Adipose Female Only"
- ],
- [
- "UCLA_BHHBF2_ADIPOSE_2005",
- "UCLA BHHBF2 Adipose (2005) mlratio **"
- ],
- [
"UCLA_CTB6B6CTF2_ADIPOSE_2005",
"UCLA CTB6/B6CTF2 Adipose (2005) mlratio **"
- ],
- [
- "UCLA_BHF2_ADIPOSE_0605",
- "UCLA BHF2 Adipose (June05) mlratio"
]
],
"Brain": [
[
- "GSE15222_F_N_RI_0409",
- "GSE15222 Human Brain Normal Myers (Apr09) RankInv"
- ],
- [
- "GSE15222_F_A_RI_0409",
- "GSE15222 Human Brain Alzheimer Myers (Apr09) RankInv"
- ],
- [
- "GSE5281_F_RMA_N_0709",
- "GSE5281 Human Brain Normal Full Liang (Jul09) RMA"
- ],
- [
- "GSE5281_F_RMA_Alzh_0709",
- "GSE5281 Human Brain Alzheimer Full Liang (Jul09) RMA"
- ],
- [
- "INIA_MacFas_brain_RMA_0110",
- "INIA Macaca fasicularis Brain (Jan10) RMA **"
- ],
- [
- "GSE15222_F_RI_0409",
- "GSE15222 Human Brain Myers (Apr09) RankInv"
- ],
- [
- "GSE5281_F_RMA0709",
- "GSE5281 Human Brain Full Liang (Jul09) RMA"
- ],
- [
- "GSE5281_RMA0709",
- "GSE5281 Human Brain Best 102 Liang (Jul09) RMA"
- ],
- [
- "UCLA_CTB6B6CTF2_BRAIN_FEMALE",
- "UCLA CTB6B6CTF2 Brain Female mlratio **"
- ],
- [
"UCLA_CTB6B6CTF2_BRAIN_MALE",
"UCLA CTB6B6CTF2 Brain Male mlratio **"
],
[
- "UCLA_BHF2_BRAIN_MALE",
- "UCLA BHF2 Brain Male mlratio"
- ],
- [
- "UCLA_BHF2_BRAIN_FEMALE",
- "UCLA BHF2 Brain Female mlratio"
- ],
- [
- "UCLA_BHHBF2_BRAIN_FEMALE",
- "UCLA BHHBF2 Brain Female Only"
- ],
- [
- "UCLA_BHHBF2_BRAIN_MALE",
- "UCLA BHHBF2 Brain Male Only"
- ],
- [
- "UCLA_BHHBF2_BRAIN_2005",
- "UCLA BHHBF2 Brain (2005) mlratio **"
+ "UCLA_CTB6B6CTF2_BRAIN_FEMALE",
+ "UCLA CTB6B6CTF2 Brain Female mlratio **"
],
[
"UCLA_CTB6B6CTF2_BRAIN_2005",
"UCLA CTB6/B6CTF2 Brain (2005) mlratio **"
- ],
- [
- "UCLA_BHF2_BRAIN_0605",
- "UCLA BHF2 Brain (June05) mlratio"
- ],
- [
- "BR_M2_1106_R",
- "UCHSC BXD Whole Brain M430 2.0 (Nov06) RMA"
- ],
- [
- "IBR_M_0606_R",
- "INIA Brain mRNA M430 (Jun06) RMA"
- ],
- [
- "IBR_M_0106_P",
- "INIA Brain mRNA M430 (Jan06) PDNN"
- ],
- [
- "IBR_M_0106_R",
- "INIA Brain mRNA M430 (Jan06) RMA"
- ],
- [
- "BR_U_1105_P",
- "UTHSC Brain mRNA U74Av2 (Nov05) PDNN"
- ],
- [
- "BR_U_0805_M",
- "UTHSC Brain mRNA U74Av2 (Aug05) MAS5"
- ],
- [
- "BR_U_0805_P",
- "UTHSC Brain mRNA U74Av2 (Aug05) PDNN"
- ],
- [
- "BR_U_0805_R",
- "UTHSC Brain mRNA U74Av2 (Aug05) RMA"
- ],
- [
- "BRF2_M_0805_R",
- "OHSU/VA B6D2F2 Brain mRNA M430 (Aug05) RMA"
- ],
- [
- "BRF2_M_0805_P",
- "OHSU/VA B6D2F2 Brain mRNA M430 (Aug05) PDNN"
- ],
- [
- "BRF2_M_0805_M",
- "OHSU/VA B6D2F2 Brain mRNA M430 (Aug05) MAS5"
- ],
- [
- "BRF2_M_0304_P",
- "OHSU/VA B6D2F2 Brain mRNA M430A (Mar04) PDNN"
- ],
- [
- "BRF2_M_0304_R",
- "OHSU/VA B6D2F2 Brain mRNA M430A (Mar04) RMA"
- ],
- [
- "BRF2_M_0304_M",
- "OHSU/VA B6D2F2 Brain mRNA M430A (Mar04) MAS5"
- ],
- [
- "CB_M_0204_P",
- "INIA Brain mRNA M430 (Feb04) PDNN"
]
],
"Genotypes": [
@@ -4156,178 +1508,30 @@
],
"Liver": [
[
- "GSE16780_UCLA_ML0911",
- "GSE16780 UCLA Hybrid MDP Liver Affy HT M430A (Sep11) RMA"
- ],
- [
- "JAX_CSB_L_0711",
- "JAX Liver Affy M430 2.0 (Jul11) MDP"
- ],
- [
- "JAX_CSB_L_HF_0711",
- "JAX Liver HF Affy M430 2.0 (Jul11) MDP"
- ],
- [
- "JAX_CSB_L_6C_0711",
- "JAX Liver 6C Affy M430 2.0 (Jul11) MDP"
- ],
- [
- "HLC_0311",
- "GSE9588 Human Liver Normal (Mar11) Both Sexes"
- ],
- [
- "HLCM_0311",
- "GSE9588 Human Liver Normal (Mar11) Males"
- ],
- [
- "LV_G_0106_F",
- "UNC Agilent G4121A Liver LOWESS Stanford (Jan06) Females"
- ],
- [
- "LV_G_0106_M",
- "UNC Agilent G4121A Liver LOWESS Stanford (Jan06) Males"
- ],
- [
- "LV_G_0106_B",
- "UNC Agilent G4121A Liver LOWESS Stanford (Jan06) Both Sexes"
- ],
- [
- "GenEx_BXD_liverSal_RMA_F_0211",
- "GenEx BXD Sal Liver Affy M430 2.0 (Feb11) RMA Females **"
- ],
- [
- "GenEx_BXD_liverSal_RMA_M_0211",
- "GenEx BXD Sal Liver Affy M430 2.0 (Feb11) RMA Males **"
- ],
- [
- "GenEx_BXD_liverSal_RMA_0211",
- "GenEx BXD Sal Liver Affy M430 2.0 (Feb11) RMA Both Sexes **"
- ],
- [
- "GenEx_BXD_liverEt_RMA_F_0211",
- "GenEx BXD EtOH Liver Affy M430 2.0 (Feb11) RMA Females **"
- ],
- [
- "GenEx_BXD_liverEt_RMA_M_0211",
- "GenEx BXD EtOH Liver Affy M430 2.0 (Feb11) RMA Males **"
- ],
- [
- "GenEx_BXD_liverEt_RMA_0211",
- "GenEx BXD EtOH Liver Affy M430 2.0 (Feb11) RMA Both Sexes **"
- ],
- [
- "SUH_Liv_RMA_0611",
- "SUH BXD Liver Affy Mouse Gene 1.0 ST (Jun11) RMA **"
- ],
- [
- "OXUKHS_ILMLiver_RI0510",
- "OX UK HS ILM6v1.1 Liver (May 2010) RankInv"
- ],
- [
- "HXB_Liver_1208",
- "MDC/CAS/UCL Liver 230v2 (Dec08) RMA"
- ],
- [
"UCLA_CTB6B6CTF2_LIVER_MALE",
"UCLA CTB6B6CTF2 Liver Male mlratio **"
],
[
- "UCLA_BHF2_LIVER_MALE",
- "UCLA BHF2 Liver Male mlratio"
- ],
- [
"UCLA_CTB6B6CTF2_LIVER_FEMALE",
"UCLA CTB6B6CTF2 Liver Female mlratio **"
],
[
- "UCLA_BHHBF2_LIVER_FEMALE",
- "UCLA BHHBF2 Liver Female Only"
- ],
- [
- "UCLA_BHHBF2_LIVER_MALE",
- "UCLA BHHBF2 Liver Male Only"
- ],
- [
- "UCLA_BHF2_LIVER_FEMALE",
- "UCLA BHF2 Liver Female mlratio"
- ],
- [
- "UCLA_BHHBF2_LIVER_2005",
- "UCLA BHHBF2 Liver (2005) mlratio **"
- ],
- [
"UCLA_CTB6B6CTF2_LIVER_2005",
"UCLA CTB6/B6CTF2 Liver (2005) mlratio **"
- ],
- [
- "UCLA_BHF2_LIVER_0605",
- "UCLA BHF2 Liver (June05) mlratio"
- ],
- [
- "UCLA_BDF2_LIVER_1999",
- "UCLA BDF2 Liver (1999) mlratio"
- ],
- [
- "LVF2_M_0704_R",
- "(B6 x BTBR)F2-ob/ob Liver mRNA M430 (Jul04) RMA"
- ],
- [
- "LVF2_M_0704_M",
- "(B6 x BTBR)F2-ob/ob Liver mRNA M430 (Jul04) MAS5"
- ],
- [
- "HLCF_0311",
- "GSE9588 Human Liver Normal (Mar11) Females"
]
],
"Muscle": [
[
- "EPFLMouseMuscleRMA1211",
- "EPFL/LISP BXD Muscle Affy Mouse Gene 1.0 ST (Dec11) RMA **"
- ],
- [
- "EPFLMouseMuscleCDRMA1211",
- "EPFL/LISP BXD CD Muscle Affy Mouse Gene 1.0 ST (Dec11) RMA **"
- ],
- [
- "EPFLMouseMuscleHFDRMA1211",
- "EPFL/LISP BXD HFD Muscle Affy Mouse Gene 1.0 ST (Dec11) RMA **"
- ],
- [
- "UCLA_CTB6B6CTF2_MUSCLE_FEMALE",
- "UCLA CTB6B6CTF2 Muscle Female mlratio **"
- ],
- [
"UCLA_CTB6B6CTF2_MUSCLE_MALE",
"UCLA CTB6B6CTF2 Muscle Male mlratio **"
],
[
- "UCLA_BHHBF2_MUSCLE_FEMALE",
- "UCLA BHHBF2 Muscle Female Only"
- ],
- [
- "UCLA_BHHBF2_MUSCLE_MALE",
- "UCLA BHHBF2 Muscle Male Only"
- ],
- [
- "UCLA_BHF2_MUSCLE_MALE",
- "UCLA BHF2 Muscle Male mlratio **"
- ],
- [
- "UCLA_BHF2_MUSCLE_FEMALE",
- "UCLA BHF2 Muscle Female mlratio **"
- ],
- [
- "UCLA_BHHBF2_MUSCLE_2005",
- "UCLA BHHBF2 Muscle (2005) mlratio **"
+ "UCLA_CTB6B6CTF2_MUSCLE_FEMALE",
+ "UCLA CTB6B6CTF2 Muscle Female mlratio **"
],
[
"UCLA_CTB6B6CTF2_MUSCLE_2005",
"UCLA CTB6/B6CTF2 Muscle (2005) mlratio **"
- ],
- [
- "UCLA_BHF2_MUSCLE_0605",
- "UCLA BHF2 Muscle (June05) mlratio **"
]
],
"Phenotypes": [
@@ -4346,124 +1550,12 @@
],
"Hippocampus": [
[
- "KIN_YSM_HIP_0711",
- "KIN/YSM Human HIP Affy Hu-Exon 1.0 ST (Jul11) Quantile **"
- ],
- [
- "UMUTAffyExon_0209_RMA_MDP",
- "UMUTAffy Hippocampus Exon (Feb09) RMA MDP"
- ],
- [
- "HC_M2_0606_MDP",
- "Hippocampus Consortium M430v2 (Jun06) RMA MDP"
- ],
- [
- "OXUKHS_ILMHipp_RI0510",
- "OX UK HS ILM6v1.1 Hippocampus (May 2010) RankInv"
- ],
- [
- "INIA_MacFas_Hc_RMA_0110",
- "INIA Macaca fasicularis Hippocampus control (Jan10) RMA **"
- ],
- [
- "INIA_MacFas_He_RMA_0110",
- "INIA Macaca fasicularis Hippocampus ethanol (Jan10) RMA **"
- ],
- [
- "UT_HippRatEx_RMA_0709",
- "UT Hippocampus Affy RaEx 1.0 Exon (Jul09) RMA"
- ],
- [
- "Illum_LXS_Hipp_loess0807",
- "Hippocampus Illumina (Aug07) LOESS"
- ],
- [
- "Illum_LXS_Hipp_loess_nb0807",
- "Hippocampus Illumina (Aug07) LOESS_NB"
- ],
- [
- "Illum_LXS_Hipp_quant0807",
- "Hippocampus Illumina (Aug07) QUANT"
- ],
- [
- "Illum_LXS_Hipp_quant_nb0807",
- "Hippocampus Illumina (Aug07) QUANT_NB"
- ],
- [
- "Illum_LXS_Hipp_rsn0807",
- "Hippocampus Illumina (Aug07) RSN"
- ],
- [
- "Illum_LXS_Hipp_rsn_nb0807",
- "Hippocampus Illumina (Aug07) RSN_NB"
- ],
- [
- "Hipp_Illumina_RankInv_0507",
- "Hippocampus Illumina (May07) RankInv"
- ],
- [
- "HC_M2_0606_P",
- "Hippocampus Consortium M430v2 (Jun06) PDNN"
- ],
- [
- "HC_M2_0606_M",
- "Hippocampus Consortium M430v2 (Jun06) MAS5"
- ],
- [
- "HC_M2_0606_R",
- "Hippocampus Consortium M430v2 (Jun06) RMA"
- ],
- [
"HC_M2CB_1205_R",
"Hippocampus Consortium M430v2 CXB (Dec05) RMA"
],
[
"HC_M2CB_1205_P",
"Hippocampus Consortium M430v2 CXB (Dec05) PDNN"
- ],
- [
- "UMUTAffyExon_0209_RMA",
- "UMUTAffy Hippocampus Exon (Feb09) RMA"
- ],
- [
- "UT_ILM_BXD_hipp_NON_0909",
- "UTHSC Hippocampus Illumina v6.1 NON (Sep09) RankInv"
- ],
- [
- "UT_ILM_BXD_hipp_NOS_0909",
- "UTHSC Hippocampus Illumina v6.1 NOS (Sep09) RankInv"
- ],
- [
- "UT_ILM_BXD_hipp_NOE_0909",
- "UTHSC Hippocampus Illumina v6.1 NOE (Sep09) RankInv"
- ],
- [
- "UT_ILM_BXD_hipp_RSS_0909",
- "UTHSC Hippocampus Illumina v6.1 RSS (Sep09) RankInv"
- ],
- [
- "UT_ILM_BXD_hipp_RSE_0909",
- "UTHSC Hippocampus Illumina v6.1 RSE (Sep09) RankInv"
- ],
- [
- "Illum_LXS_Hipp_RSE_1008",
- "Hippocampus Illumina RSE (Oct08) RankInv beta"
- ],
- [
- "Illum_LXS_Hipp_NOS_1008",
- "Hippocampus Illumina NOS (Oct08) RankInv beta"
- ],
- [
- "Illum_LXS_Hipp_NOE_1008",
- "Hippocampus Illumina NOE (Oct08) RankInv beta"
- ],
- [
- "Illum_LXS_Hipp_RSS_1008",
- "Hippocampus Illumina RSS (Oct08) RankInv beta"
- ],
- [
- "Illum_LXS_Hipp_NON_1008",
- "Hippocampus Illumina NON (Oct08) RankInv beta"
]
],
"Phenotypes": [
@@ -4474,26 +1566,6 @@
],
"Spleen": [
[
- "UTHSC_SPL_RMA_1210",
- "UTHSC Affy MoGene 1.0 ST Spleen (Dec10) RMA"
- ],
- [
- "UTHSC_SPL_RMA_1010",
- "UTHSC Affy MoGene 1.0 ST Spleen (Oct10) RMA"
- ],
- [
- "IoP_SPL_RMA_0509",
- "IoP Affy MOE 430v2 Spleen (May09) RMA"
- ],
- [
- "Illum_BXD_Spl_1108",
- "UWA Illumina Spleen (Nov08) RSN **"
- ],
- [
- "UTK_BXDSpl_VST_0110",
- "UTK Spleen ILM6.1 (Jan10) VST"
- ],
- [
"STSPL_1107_R",
"Stuart Spleen M430v2 (Nov07) RMA"
]
@@ -4508,264 +1580,20 @@
],
"Hippocampus": [
[
- "KIN_YSM_HIP_0711",
- "KIN/YSM Human HIP Affy Hu-Exon 1.0 ST (Jul11) Quantile **"
- ],
- [
- "UMUTAffyExon_0209_RMA_MDP",
- "UMUTAffy Hippocampus Exon (Feb09) RMA MDP"
- ],
- [
- "HC_M2_0606_MDP",
- "Hippocampus Consortium M430v2 (Jun06) RMA MDP"
- ],
- [
"OXUKHS_ILMHipp_RI0510",
"OX UK HS ILM6v1.1 Hippocampus (May 2010) RankInv"
- ],
- [
- "INIA_MacFas_Hc_RMA_0110",
- "INIA Macaca fasicularis Hippocampus control (Jan10) RMA **"
- ],
- [
- "INIA_MacFas_He_RMA_0110",
- "INIA Macaca fasicularis Hippocampus ethanol (Jan10) RMA **"
- ],
- [
- "UT_HippRatEx_RMA_0709",
- "UT Hippocampus Affy RaEx 1.0 Exon (Jul09) RMA"
- ],
- [
- "Illum_LXS_Hipp_loess0807",
- "Hippocampus Illumina (Aug07) LOESS"
- ],
- [
- "Illum_LXS_Hipp_loess_nb0807",
- "Hippocampus Illumina (Aug07) LOESS_NB"
- ],
- [
- "Illum_LXS_Hipp_quant0807",
- "Hippocampus Illumina (Aug07) QUANT"
- ],
- [
- "Illum_LXS_Hipp_quant_nb0807",
- "Hippocampus Illumina (Aug07) QUANT_NB"
- ],
- [
- "Illum_LXS_Hipp_rsn0807",
- "Hippocampus Illumina (Aug07) RSN"
- ],
- [
- "Illum_LXS_Hipp_rsn_nb0807",
- "Hippocampus Illumina (Aug07) RSN_NB"
- ],
- [
- "Hipp_Illumina_RankInv_0507",
- "Hippocampus Illumina (May07) RankInv"
- ],
- [
- "HC_M2_0606_P",
- "Hippocampus Consortium M430v2 (Jun06) PDNN"
- ],
- [
- "HC_M2_0606_M",
- "Hippocampus Consortium M430v2 (Jun06) MAS5"
- ],
- [
- "HC_M2_0606_R",
- "Hippocampus Consortium M430v2 (Jun06) RMA"
- ],
- [
- "HC_M2CB_1205_R",
- "Hippocampus Consortium M430v2 CXB (Dec05) RMA"
- ],
- [
- "HC_M2CB_1205_P",
- "Hippocampus Consortium M430v2 CXB (Dec05) PDNN"
- ],
- [
- "UMUTAffyExon_0209_RMA",
- "UMUTAffy Hippocampus Exon (Feb09) RMA"
- ],
- [
- "UT_ILM_BXD_hipp_NON_0909",
- "UTHSC Hippocampus Illumina v6.1 NON (Sep09) RankInv"
- ],
- [
- "UT_ILM_BXD_hipp_NOS_0909",
- "UTHSC Hippocampus Illumina v6.1 NOS (Sep09) RankInv"
- ],
- [
- "UT_ILM_BXD_hipp_NOE_0909",
- "UTHSC Hippocampus Illumina v6.1 NOE (Sep09) RankInv"
- ],
- [
- "UT_ILM_BXD_hipp_RSS_0909",
- "UTHSC Hippocampus Illumina v6.1 RSS (Sep09) RankInv"
- ],
- [
- "UT_ILM_BXD_hipp_RSE_0909",
- "UTHSC Hippocampus Illumina v6.1 RSE (Sep09) RankInv"
- ],
- [
- "Illum_LXS_Hipp_RSE_1008",
- "Hippocampus Illumina RSE (Oct08) RankInv beta"
- ],
- [
- "Illum_LXS_Hipp_NOS_1008",
- "Hippocampus Illumina NOS (Oct08) RankInv beta"
- ],
- [
- "Illum_LXS_Hipp_NOE_1008",
- "Hippocampus Illumina NOE (Oct08) RankInv beta"
- ],
- [
- "Illum_LXS_Hipp_RSS_1008",
- "Hippocampus Illumina RSS (Oct08) RankInv beta"
- ],
- [
- "Illum_LXS_Hipp_NON_1008",
- "Hippocampus Illumina NON (Oct08) RankInv beta"
]
],
"Liver": [
[
- "GSE16780_UCLA_ML0911",
- "GSE16780 UCLA Hybrid MDP Liver Affy HT M430A (Sep11) RMA"
- ],
- [
- "JAX_CSB_L_0711",
- "JAX Liver Affy M430 2.0 (Jul11) MDP"
- ],
- [
- "JAX_CSB_L_HF_0711",
- "JAX Liver HF Affy M430 2.0 (Jul11) MDP"
- ],
- [
- "JAX_CSB_L_6C_0711",
- "JAX Liver 6C Affy M430 2.0 (Jul11) MDP"
- ],
- [
- "HLC_0311",
- "GSE9588 Human Liver Normal (Mar11) Both Sexes"
- ],
- [
- "HLCM_0311",
- "GSE9588 Human Liver Normal (Mar11) Males"
- ],
- [
- "LV_G_0106_F",
- "UNC Agilent G4121A Liver LOWESS Stanford (Jan06) Females"
- ],
- [
- "LV_G_0106_M",
- "UNC Agilent G4121A Liver LOWESS Stanford (Jan06) Males"
- ],
- [
- "LV_G_0106_B",
- "UNC Agilent G4121A Liver LOWESS Stanford (Jan06) Both Sexes"
- ],
- [
- "GenEx_BXD_liverSal_RMA_F_0211",
- "GenEx BXD Sal Liver Affy M430 2.0 (Feb11) RMA Females **"
- ],
- [
- "GenEx_BXD_liverSal_RMA_M_0211",
- "GenEx BXD Sal Liver Affy M430 2.0 (Feb11) RMA Males **"
- ],
- [
- "GenEx_BXD_liverSal_RMA_0211",
- "GenEx BXD Sal Liver Affy M430 2.0 (Feb11) RMA Both Sexes **"
- ],
- [
- "GenEx_BXD_liverEt_RMA_F_0211",
- "GenEx BXD EtOH Liver Affy M430 2.0 (Feb11) RMA Females **"
- ],
- [
- "GenEx_BXD_liverEt_RMA_M_0211",
- "GenEx BXD EtOH Liver Affy M430 2.0 (Feb11) RMA Males **"
- ],
- [
- "GenEx_BXD_liverEt_RMA_0211",
- "GenEx BXD EtOH Liver Affy M430 2.0 (Feb11) RMA Both Sexes **"
- ],
- [
- "SUH_Liv_RMA_0611",
- "SUH BXD Liver Affy Mouse Gene 1.0 ST (Jun11) RMA **"
- ],
- [
"OXUKHS_ILMLiver_RI0510",
"OX UK HS ILM6v1.1 Liver (May 2010) RankInv"
- ],
- [
- "HXB_Liver_1208",
- "MDC/CAS/UCL Liver 230v2 (Dec08) RMA"
- ],
- [
- "UCLA_CTB6B6CTF2_LIVER_MALE",
- "UCLA CTB6B6CTF2 Liver Male mlratio **"
- ],
- [
- "UCLA_BHF2_LIVER_MALE",
- "UCLA BHF2 Liver Male mlratio"
- ],
- [
- "UCLA_CTB6B6CTF2_LIVER_FEMALE",
- "UCLA CTB6B6CTF2 Liver Female mlratio **"
- ],
- [
- "UCLA_BHHBF2_LIVER_FEMALE",
- "UCLA BHHBF2 Liver Female Only"
- ],
- [
- "UCLA_BHHBF2_LIVER_MALE",
- "UCLA BHHBF2 Liver Male Only"
- ],
- [
- "UCLA_BHF2_LIVER_FEMALE",
- "UCLA BHF2 Liver Female mlratio"
- ],
- [
- "UCLA_BHHBF2_LIVER_2005",
- "UCLA BHHBF2 Liver (2005) mlratio **"
- ],
- [
- "UCLA_CTB6B6CTF2_LIVER_2005",
- "UCLA CTB6/B6CTF2 Liver (2005) mlratio **"
- ],
- [
- "UCLA_BHF2_LIVER_0605",
- "UCLA BHF2 Liver (June05) mlratio"
- ],
- [
- "UCLA_BDF2_LIVER_1999",
- "UCLA BDF2 Liver (1999) mlratio"
- ],
- [
- "LVF2_M_0704_R",
- "(B6 x BTBR)F2-ob/ob Liver mRNA M430 (Jul04) RMA"
- ],
- [
- "LVF2_M_0704_M",
- "(B6 x BTBR)F2-ob/ob Liver mRNA M430 (Jul04) MAS5"
- ],
- [
- "HLCF_0311",
- "GSE9588 Human Liver Normal (Mar11) Females"
]
],
"Lung": [
[
"OXUKHS_ILMLung_RI0510",
"OX UK HS ILM6v1.1 Lung (May 2010) RankInv"
- ],
- [
- "HZI_0408_R",
- "HZI Lung M430v2 (Apr08) RMA"
- ],
- [
- "HZI_0408_M",
- "HZI Lung M430v2 (Apr08) MAS5"
]
],
"Phenotypes": [
@@ -4790,76 +1618,8 @@
],
"Striatum": [
[
- "DevStriatum_ILM6.2P3RInv_1111",
- "BIDMC/UTHSC Dev Striatum P3 ILMv6.2 (Nov11) RankInv **"
- ],
- [
- "DevStriatum_ILM6.2P14RInv_1111",
- "BIDMC/UTHSC Dev Striatum P14 ILMv6.2 (Nov11) RankInv **"
- ],
- [
- "KIN_YSM_STR_0711",
- "KIN/YSM Human STR Affy Hu-Exon 1.0 ST (Jul11) Quantile **"
- ],
- [
"OHSU_HS-CC_ILMStr_0211",
"OHSU HS-CC Striatum ILM6v1 (Feb11) RankInv"
- ],
- [
- "UTHSC_Striatum_RankInv_1210",
- "HQF BXD Striatum ILM6.1 (Dec10v2) RankInv"
- ],
- [
- "UTHSC_Str_RankInv_1210",
- "HQF BXD Striatum ILM6.1 (Dec10) RankInv"
- ],
- [
- "UTHSC_1107_RankInv",
- "HQF BXD Striatum ILM6.1 (Nov07) RankInv"
- ],
- [
- "SA_M2_0905_P",
- "OHSU/VA B6D2F2 Striatum M430v2 (Sep05) PDNN"
- ],
- [
- "SA_M2_0905_M",
- "OHSU/VA B6D2F2 Striatum M430v2 (Sep05) MAS5"
- ],
- [
- "SA_M2_0905_R",
- "OHSU/VA B6D2F2 Striatum M430v2 (Sep05) RMA"
- ],
- [
- "SA_M2_0405_MC",
- "HBP Rosen Striatum M430V2 (Apr05) MAS5 Clean"
- ],
- [
- "SA_M2_0405_RC",
- "HBP Rosen Striatum M430V2 (Apr05) RMA Clean"
- ],
- [
- "SA_M2_0405_PC",
- "HBP Rosen Striatum M430V2 (Apr05) PDNN Clean"
- ],
- [
- "SA_M2_0405_SS",
- "HBP Rosen Striatum M430V2 (Apr05) SScore"
- ],
- [
- "SA_M2_0405_RR",
- "HBP Rosen Striatum M430V2 (Apr05) RMA Orig"
- ],
- [
- "Striatum_Exon_0209",
- "HQF Striatum Exon (Feb09) RMA"
- ],
- [
- "DevStriatum_ILM6.2P3RInv_1110",
- "BIDMC/UTHSC Dev Striatum P3 ILMv6.2 (Nov10) RankInv **"
- ],
- [
- "DevStriatum_ILM6.2P14RInv_1110",
- "BIDMC/UTHSC Dev Striatum P14 ILMv6.2 (Nov10) RankInv **"
]
]
},
@@ -4872,34 +1632,6 @@
],
"Hippocampus": [
[
- "KIN_YSM_HIP_0711",
- "KIN/YSM Human HIP Affy Hu-Exon 1.0 ST (Jul11) Quantile **"
- ],
- [
- "UMUTAffyExon_0209_RMA_MDP",
- "UMUTAffy Hippocampus Exon (Feb09) RMA MDP"
- ],
- [
- "HC_M2_0606_MDP",
- "Hippocampus Consortium M430v2 (Jun06) RMA MDP"
- ],
- [
- "OXUKHS_ILMHipp_RI0510",
- "OX UK HS ILM6v1.1 Hippocampus (May 2010) RankInv"
- ],
- [
- "INIA_MacFas_Hc_RMA_0110",
- "INIA Macaca fasicularis Hippocampus control (Jan10) RMA **"
- ],
- [
- "INIA_MacFas_He_RMA_0110",
- "INIA Macaca fasicularis Hippocampus ethanol (Jan10) RMA **"
- ],
- [
- "UT_HippRatEx_RMA_0709",
- "UT Hippocampus Affy RaEx 1.0 Exon (Jul09) RMA"
- ],
- [
"Illum_LXS_Hipp_loess0807",
"Hippocampus Illumina (Aug07) LOESS"
],
@@ -4928,68 +1660,24 @@
"Hippocampus Illumina (May07) RankInv"
],
[
- "HC_M2_0606_P",
- "Hippocampus Consortium M430v2 (Jun06) PDNN"
- ],
- [
- "HC_M2_0606_M",
- "Hippocampus Consortium M430v2 (Jun06) MAS5"
- ],
- [
- "HC_M2_0606_R",
- "Hippocampus Consortium M430v2 (Jun06) RMA"
- ],
- [
- "HC_M2CB_1205_R",
- "Hippocampus Consortium M430v2 CXB (Dec05) RMA"
- ],
- [
- "HC_M2CB_1205_P",
- "Hippocampus Consortium M430v2 CXB (Dec05) PDNN"
- ],
- [
- "UMUTAffyExon_0209_RMA",
- "UMUTAffy Hippocampus Exon (Feb09) RMA"
- ],
- [
- "UT_ILM_BXD_hipp_NON_0909",
- "UTHSC Hippocampus Illumina v6.1 NON (Sep09) RankInv"
- ],
- [
- "UT_ILM_BXD_hipp_NOS_0909",
- "UTHSC Hippocampus Illumina v6.1 NOS (Sep09) RankInv"
- ],
- [
- "UT_ILM_BXD_hipp_NOE_0909",
- "UTHSC Hippocampus Illumina v6.1 NOE (Sep09) RankInv"
- ],
- [
- "UT_ILM_BXD_hipp_RSS_0909",
- "UTHSC Hippocampus Illumina v6.1 RSS (Sep09) RankInv"
+ "Illum_LXS_Hipp_NOS_1008",
+ "Hippocampus Illumina NOS (Oct08) RankInv beta"
],
[
- "UT_ILM_BXD_hipp_RSE_0909",
- "UTHSC Hippocampus Illumina v6.1 RSE (Sep09) RankInv"
+ "Illum_LXS_Hipp_NON_1008",
+ "Hippocampus Illumina NON (Oct08) RankInv beta"
],
[
"Illum_LXS_Hipp_RSE_1008",
"Hippocampus Illumina RSE (Oct08) RankInv beta"
],
[
- "Illum_LXS_Hipp_NOS_1008",
- "Hippocampus Illumina NOS (Oct08) RankInv beta"
- ],
- [
"Illum_LXS_Hipp_NOE_1008",
"Hippocampus Illumina NOE (Oct08) RankInv beta"
],
[
"Illum_LXS_Hipp_RSS_1008",
"Hippocampus Illumina RSS (Oct08) RankInv beta"
- ],
- [
- "Illum_LXS_Hipp_NON_1008",
- "Hippocampus Illumina NON (Oct08) RankInv beta"
]
],
"Phenotypes": [
@@ -5000,64 +1688,16 @@
],
"Prefrontal Cortex": [
[
- "HBTRC-MLPFC_0611",
- "HBTRC-MLC Human Prefrontal Cortex Agilent (Jun11) mlratio"
- ],
- [
- "HBTRC-MLPFC_N_0611",
- "HBTRC-MLC Human Prefrontal Cortex Agilent Normal (Jun11) mlratio"
- ],
- [
- "HBTRC-MLPFC_AD_0611",
- "HBTRC-MLC Human Prefrontal Cortex Agilent AD (Jun11) mlratio"
- ],
- [
- "HBTRC-MLPFC_HD_0611",
- "HBTRC-MLC Human Prefrontal Cortex Agilent HD (Jun11) mlratio"
- ],
- [
- "INIA_MacFas_Pf_RMA_0110",
- "INIA Macaca fasicularis Prefrontal Cortex control (Jan10) RMA **"
- ],
- [
- "INIA_MacFas_PfE_RMA_0110",
- "INIA Macaca fasicularis Prefrontal Cortex ethanol (Jan10) RMA **"
- ],
- [
- "VCUSal_1006_R",
- "VCU BXD PFC Et vs Sal M430 2.0 (Dec06) Sscore"
- ],
- [
- "VCUEtOH_1206_R",
- "VCU BXD PFC EtOH M430 2.0 (Dec06) RMA"
- ],
- [
- "VCUSal_1206_R",
- "VCU BXD PFC Sal M430 2.0 (Dec06) RMA"
- ],
- [
- "VCU_PF_Air_0111_R",
- "VCU BXD PFC CIE Air M430 2.0 (Jan11) RMA **"
- ],
- [
- "VCU_PF_Et_0111_R",
- "VCU BXD PFC CIE EtOH M430 2.0 (Jan11) RMA **"
- ],
- [
- "VCU_PF_AvE_0111_Ss",
- "VCU BXD PFC EtOH vs CIE Air M430 2.0 (Jan11) Sscore **"
- ],
- [
- "VCUEt_vs_Sal_0806_R",
- "VCU LXS PFC Et vs Sal M430A 2.0 (Aug06) Sscore **"
- ],
- [
"VCUEtOH_0806_R",
"VCU LXS PFC EtOH M430A 2.0 (Aug06) RMA **"
],
[
"VCUSal_0806_R",
"VCU LXS PFC Sal M430A 2.0 (Aug06) RMA"
+ ],
+ [
+ "VCUEt_vs_Sal_0806_R",
+ "VCU LXS PFC Et vs Sal M430A 2.0 (Aug06) Sscore **"
]
]
},
@@ -5070,132 +1710,16 @@
],
"Hippocampus": [
[
- "KIN_YSM_HIP_0711",
- "KIN/YSM Human HIP Affy Hu-Exon 1.0 ST (Jul11) Quantile **"
- ],
- [
"UMUTAffyExon_0209_RMA_MDP",
"UMUTAffy Hippocampus Exon (Feb09) RMA MDP"
],
[
"HC_M2_0606_MDP",
"Hippocampus Consortium M430v2 (Jun06) RMA MDP"
- ],
- [
- "OXUKHS_ILMHipp_RI0510",
- "OX UK HS ILM6v1.1 Hippocampus (May 2010) RankInv"
- ],
- [
- "INIA_MacFas_Hc_RMA_0110",
- "INIA Macaca fasicularis Hippocampus control (Jan10) RMA **"
- ],
- [
- "INIA_MacFas_He_RMA_0110",
- "INIA Macaca fasicularis Hippocampus ethanol (Jan10) RMA **"
- ],
- [
- "UT_HippRatEx_RMA_0709",
- "UT Hippocampus Affy RaEx 1.0 Exon (Jul09) RMA"
- ],
- [
- "Illum_LXS_Hipp_loess0807",
- "Hippocampus Illumina (Aug07) LOESS"
- ],
- [
- "Illum_LXS_Hipp_loess_nb0807",
- "Hippocampus Illumina (Aug07) LOESS_NB"
- ],
- [
- "Illum_LXS_Hipp_quant0807",
- "Hippocampus Illumina (Aug07) QUANT"
- ],
- [
- "Illum_LXS_Hipp_quant_nb0807",
- "Hippocampus Illumina (Aug07) QUANT_NB"
- ],
- [
- "Illum_LXS_Hipp_rsn0807",
- "Hippocampus Illumina (Aug07) RSN"
- ],
- [
- "Illum_LXS_Hipp_rsn_nb0807",
- "Hippocampus Illumina (Aug07) RSN_NB"
- ],
- [
- "Hipp_Illumina_RankInv_0507",
- "Hippocampus Illumina (May07) RankInv"
- ],
- [
- "HC_M2_0606_P",
- "Hippocampus Consortium M430v2 (Jun06) PDNN"
- ],
- [
- "HC_M2_0606_M",
- "Hippocampus Consortium M430v2 (Jun06) MAS5"
- ],
- [
- "HC_M2_0606_R",
- "Hippocampus Consortium M430v2 (Jun06) RMA"
- ],
- [
- "HC_M2CB_1205_R",
- "Hippocampus Consortium M430v2 CXB (Dec05) RMA"
- ],
- [
- "HC_M2CB_1205_P",
- "Hippocampus Consortium M430v2 CXB (Dec05) PDNN"
- ],
- [
- "UMUTAffyExon_0209_RMA",
- "UMUTAffy Hippocampus Exon (Feb09) RMA"
- ],
- [
- "UT_ILM_BXD_hipp_NON_0909",
- "UTHSC Hippocampus Illumina v6.1 NON (Sep09) RankInv"
- ],
- [
- "UT_ILM_BXD_hipp_NOS_0909",
- "UTHSC Hippocampus Illumina v6.1 NOS (Sep09) RankInv"
- ],
- [
- "UT_ILM_BXD_hipp_NOE_0909",
- "UTHSC Hippocampus Illumina v6.1 NOE (Sep09) RankInv"
- ],
- [
- "UT_ILM_BXD_hipp_RSS_0909",
- "UTHSC Hippocampus Illumina v6.1 RSS (Sep09) RankInv"
- ],
- [
- "UT_ILM_BXD_hipp_RSE_0909",
- "UTHSC Hippocampus Illumina v6.1 RSE (Sep09) RankInv"
- ],
- [
- "Illum_LXS_Hipp_RSE_1008",
- "Hippocampus Illumina RSE (Oct08) RankInv beta"
- ],
- [
- "Illum_LXS_Hipp_NOS_1008",
- "Hippocampus Illumina NOS (Oct08) RankInv beta"
- ],
- [
- "Illum_LXS_Hipp_NOE_1008",
- "Hippocampus Illumina NOE (Oct08) RankInv beta"
- ],
- [
- "Illum_LXS_Hipp_RSS_1008",
- "Hippocampus Illumina RSS (Oct08) RankInv beta"
- ],
- [
- "Illum_LXS_Hipp_NON_1008",
- "Hippocampus Illumina NON (Oct08) RankInv beta"
]
],
"Liver": [
[
- "GSE16780_UCLA_ML0911",
- "GSE16780 UCLA Hybrid MDP Liver Affy HT M430A (Sep11) RMA"
- ],
- [
"JAX_CSB_L_0711",
"JAX Liver Affy M430 2.0 (Jul11) MDP"
],
@@ -5206,114 +1730,6 @@
[
"JAX_CSB_L_6C_0711",
"JAX Liver 6C Affy M430 2.0 (Jul11) MDP"
- ],
- [
- "HLC_0311",
- "GSE9588 Human Liver Normal (Mar11) Both Sexes"
- ],
- [
- "HLCM_0311",
- "GSE9588 Human Liver Normal (Mar11) Males"
- ],
- [
- "LV_G_0106_F",
- "UNC Agilent G4121A Liver LOWESS Stanford (Jan06) Females"
- ],
- [
- "LV_G_0106_M",
- "UNC Agilent G4121A Liver LOWESS Stanford (Jan06) Males"
- ],
- [
- "LV_G_0106_B",
- "UNC Agilent G4121A Liver LOWESS Stanford (Jan06) Both Sexes"
- ],
- [
- "GenEx_BXD_liverSal_RMA_F_0211",
- "GenEx BXD Sal Liver Affy M430 2.0 (Feb11) RMA Females **"
- ],
- [
- "GenEx_BXD_liverSal_RMA_M_0211",
- "GenEx BXD Sal Liver Affy M430 2.0 (Feb11) RMA Males **"
- ],
- [
- "GenEx_BXD_liverSal_RMA_0211",
- "GenEx BXD Sal Liver Affy M430 2.0 (Feb11) RMA Both Sexes **"
- ],
- [
- "GenEx_BXD_liverEt_RMA_F_0211",
- "GenEx BXD EtOH Liver Affy M430 2.0 (Feb11) RMA Females **"
- ],
- [
- "GenEx_BXD_liverEt_RMA_M_0211",
- "GenEx BXD EtOH Liver Affy M430 2.0 (Feb11) RMA Males **"
- ],
- [
- "GenEx_BXD_liverEt_RMA_0211",
- "GenEx BXD EtOH Liver Affy M430 2.0 (Feb11) RMA Both Sexes **"
- ],
- [
- "SUH_Liv_RMA_0611",
- "SUH BXD Liver Affy Mouse Gene 1.0 ST (Jun11) RMA **"
- ],
- [
- "OXUKHS_ILMLiver_RI0510",
- "OX UK HS ILM6v1.1 Liver (May 2010) RankInv"
- ],
- [
- "HXB_Liver_1208",
- "MDC/CAS/UCL Liver 230v2 (Dec08) RMA"
- ],
- [
- "UCLA_CTB6B6CTF2_LIVER_MALE",
- "UCLA CTB6B6CTF2 Liver Male mlratio **"
- ],
- [
- "UCLA_BHF2_LIVER_MALE",
- "UCLA BHF2 Liver Male mlratio"
- ],
- [
- "UCLA_CTB6B6CTF2_LIVER_FEMALE",
- "UCLA CTB6B6CTF2 Liver Female mlratio **"
- ],
- [
- "UCLA_BHHBF2_LIVER_FEMALE",
- "UCLA BHHBF2 Liver Female Only"
- ],
- [
- "UCLA_BHHBF2_LIVER_MALE",
- "UCLA BHHBF2 Liver Male Only"
- ],
- [
- "UCLA_BHF2_LIVER_FEMALE",
- "UCLA BHF2 Liver Female mlratio"
- ],
- [
- "UCLA_BHHBF2_LIVER_2005",
- "UCLA BHHBF2 Liver (2005) mlratio **"
- ],
- [
- "UCLA_CTB6B6CTF2_LIVER_2005",
- "UCLA CTB6/B6CTF2 Liver (2005) mlratio **"
- ],
- [
- "UCLA_BHF2_LIVER_0605",
- "UCLA BHF2 Liver (June05) mlratio"
- ],
- [
- "UCLA_BDF2_LIVER_1999",
- "UCLA BDF2 Liver (1999) mlratio"
- ],
- [
- "LVF2_M_0704_R",
- "(B6 x BTBR)F2-ob/ob Liver mRNA M430 (Jul04) RMA"
- ],
- [
- "LVF2_M_0704_M",
- "(B6 x BTBR)F2-ob/ob Liver mRNA M430 (Jul04) MAS5"
- ],
- [
- "HLCF_0311",
- "GSE9588 Human Liver Normal (Mar11) Females"
]
],
"Phenotypes": [
@@ -5334,18 +1750,6 @@
[
"NCI_Mam_Tum_RMA_0409",
"NCI Mammary M430v2 (Apr09) RMA"
- ],
- [
- "NCI_Agil_Mam_Tum_RMA_0409",
- "NCI Mammary LMT miRNA v2 (Apr09) RMA"
- ],
- [
- "MA_M_0704_R",
- "NCI Mammary mRNA M430 (July04) RMA"
- ],
- [
- "MA_M_0704_M",
- "NCI Mammary mRNA M430 (July04) MAS5"
]
],
"Phenotypes": [
@@ -5378,152 +1782,12 @@
],
"Hippocampus": [
[
- "KIN_YSM_HIP_0711",
- "KIN/YSM Human HIP Affy Hu-Exon 1.0 ST (Jul11) Quantile **"
- ],
- [
- "UMUTAffyExon_0209_RMA_MDP",
- "UMUTAffy Hippocampus Exon (Feb09) RMA MDP"
- ],
- [
- "HC_M2_0606_MDP",
- "Hippocampus Consortium M430v2 (Jun06) RMA MDP"
- ],
- [
- "OXUKHS_ILMHipp_RI0510",
- "OX UK HS ILM6v1.1 Hippocampus (May 2010) RankInv"
- ],
- [
- "INIA_MacFas_Hc_RMA_0110",
- "INIA Macaca fasicularis Hippocampus control (Jan10) RMA **"
- ],
- [
- "INIA_MacFas_He_RMA_0110",
- "INIA Macaca fasicularis Hippocampus ethanol (Jan10) RMA **"
- ],
- [
"UT_HippRatEx_RMA_0709",
"UT Hippocampus Affy RaEx 1.0 Exon (Jul09) RMA"
- ],
- [
- "Illum_LXS_Hipp_loess0807",
- "Hippocampus Illumina (Aug07) LOESS"
- ],
- [
- "Illum_LXS_Hipp_loess_nb0807",
- "Hippocampus Illumina (Aug07) LOESS_NB"
- ],
- [
- "Illum_LXS_Hipp_quant0807",
- "Hippocampus Illumina (Aug07) QUANT"
- ],
- [
- "Illum_LXS_Hipp_quant_nb0807",
- "Hippocampus Illumina (Aug07) QUANT_NB"
- ],
- [
- "Illum_LXS_Hipp_rsn0807",
- "Hippocampus Illumina (Aug07) RSN"
- ],
- [
- "Illum_LXS_Hipp_rsn_nb0807",
- "Hippocampus Illumina (Aug07) RSN_NB"
- ],
- [
- "Hipp_Illumina_RankInv_0507",
- "Hippocampus Illumina (May07) RankInv"
- ],
- [
- "HC_M2_0606_P",
- "Hippocampus Consortium M430v2 (Jun06) PDNN"
- ],
- [
- "HC_M2_0606_M",
- "Hippocampus Consortium M430v2 (Jun06) MAS5"
- ],
- [
- "HC_M2_0606_R",
- "Hippocampus Consortium M430v2 (Jun06) RMA"
- ],
- [
- "HC_M2CB_1205_R",
- "Hippocampus Consortium M430v2 CXB (Dec05) RMA"
- ],
- [
- "HC_M2CB_1205_P",
- "Hippocampus Consortium M430v2 CXB (Dec05) PDNN"
- ],
- [
- "UMUTAffyExon_0209_RMA",
- "UMUTAffy Hippocampus Exon (Feb09) RMA"
- ],
- [
- "UT_ILM_BXD_hipp_NON_0909",
- "UTHSC Hippocampus Illumina v6.1 NON (Sep09) RankInv"
- ],
- [
- "UT_ILM_BXD_hipp_NOS_0909",
- "UTHSC Hippocampus Illumina v6.1 NOS (Sep09) RankInv"
- ],
- [
- "UT_ILM_BXD_hipp_NOE_0909",
- "UTHSC Hippocampus Illumina v6.1 NOE (Sep09) RankInv"
- ],
- [
- "UT_ILM_BXD_hipp_RSS_0909",
- "UTHSC Hippocampus Illumina v6.1 RSS (Sep09) RankInv"
- ],
- [
- "UT_ILM_BXD_hipp_RSE_0909",
- "UTHSC Hippocampus Illumina v6.1 RSE (Sep09) RankInv"
- ],
- [
- "Illum_LXS_Hipp_RSE_1008",
- "Hippocampus Illumina RSE (Oct08) RankInv beta"
- ],
- [
- "Illum_LXS_Hipp_NOS_1008",
- "Hippocampus Illumina NOS (Oct08) RankInv beta"
- ],
- [
- "Illum_LXS_Hipp_NOE_1008",
- "Hippocampus Illumina NOE (Oct08) RankInv beta"
- ],
- [
- "Illum_LXS_Hipp_RSS_1008",
- "Hippocampus Illumina RSS (Oct08) RankInv beta"
- ],
- [
- "Illum_LXS_Hipp_NON_1008",
- "Hippocampus Illumina NON (Oct08) RankInv beta"
]
],
"Kidney": [
[
- "MA_M2F_0706_R",
- "Mouse kidney M430v2 Female (Aug06) RMA"
- ],
- [
- "MA_M2M_0706_R",
- "Mouse kidney M430v2 Male (Aug06) RMA"
- ],
- [
- "MA_M2_0806_R",
- "Mouse kidney M430v2 Sex Balanced (Aug06) RMA"
- ],
- [
- "MA_M2_0806_P",
- "Mouse Kidney M430v2 Sex Balanced (Aug06) PDNN"
- ],
- [
- "MA_M2_0706_P",
- "Mouse Kidney M430v2 (Jul06) PDNN"
- ],
- [
- "MA_M2_0706_R",
- "Mouse Kidney M430v2 (Jul06) RMA"
- ],
- [
"KI_2A_0405_M",
"MDC/CAS/ICL Kidney 230A (Apr05) MAS5"
],
@@ -5538,128 +1802,8 @@
],
"Liver": [
[
- "GSE16780_UCLA_ML0911",
- "GSE16780 UCLA Hybrid MDP Liver Affy HT M430A (Sep11) RMA"
- ],
- [
- "JAX_CSB_L_0711",
- "JAX Liver Affy M430 2.0 (Jul11) MDP"
- ],
- [
- "JAX_CSB_L_HF_0711",
- "JAX Liver HF Affy M430 2.0 (Jul11) MDP"
- ],
- [
- "JAX_CSB_L_6C_0711",
- "JAX Liver 6C Affy M430 2.0 (Jul11) MDP"
- ],
- [
- "HLC_0311",
- "GSE9588 Human Liver Normal (Mar11) Both Sexes"
- ],
- [
- "HLCM_0311",
- "GSE9588 Human Liver Normal (Mar11) Males"
- ],
- [
- "LV_G_0106_F",
- "UNC Agilent G4121A Liver LOWESS Stanford (Jan06) Females"
- ],
- [
- "LV_G_0106_M",
- "UNC Agilent G4121A Liver LOWESS Stanford (Jan06) Males"
- ],
- [
- "LV_G_0106_B",
- "UNC Agilent G4121A Liver LOWESS Stanford (Jan06) Both Sexes"
- ],
- [
- "GenEx_BXD_liverSal_RMA_F_0211",
- "GenEx BXD Sal Liver Affy M430 2.0 (Feb11) RMA Females **"
- ],
- [
- "GenEx_BXD_liverSal_RMA_M_0211",
- "GenEx BXD Sal Liver Affy M430 2.0 (Feb11) RMA Males **"
- ],
- [
- "GenEx_BXD_liverSal_RMA_0211",
- "GenEx BXD Sal Liver Affy M430 2.0 (Feb11) RMA Both Sexes **"
- ],
- [
- "GenEx_BXD_liverEt_RMA_F_0211",
- "GenEx BXD EtOH Liver Affy M430 2.0 (Feb11) RMA Females **"
- ],
- [
- "GenEx_BXD_liverEt_RMA_M_0211",
- "GenEx BXD EtOH Liver Affy M430 2.0 (Feb11) RMA Males **"
- ],
- [
- "GenEx_BXD_liverEt_RMA_0211",
- "GenEx BXD EtOH Liver Affy M430 2.0 (Feb11) RMA Both Sexes **"
- ],
- [
- "SUH_Liv_RMA_0611",
- "SUH BXD Liver Affy Mouse Gene 1.0 ST (Jun11) RMA **"
- ],
- [
- "OXUKHS_ILMLiver_RI0510",
- "OX UK HS ILM6v1.1 Liver (May 2010) RankInv"
- ],
- [
"HXB_Liver_1208",
"MDC/CAS/UCL Liver 230v2 (Dec08) RMA"
- ],
- [
- "UCLA_CTB6B6CTF2_LIVER_MALE",
- "UCLA CTB6B6CTF2 Liver Male mlratio **"
- ],
- [
- "UCLA_BHF2_LIVER_MALE",
- "UCLA BHF2 Liver Male mlratio"
- ],
- [
- "UCLA_CTB6B6CTF2_LIVER_FEMALE",
- "UCLA CTB6B6CTF2 Liver Female mlratio **"
- ],
- [
- "UCLA_BHHBF2_LIVER_FEMALE",
- "UCLA BHHBF2 Liver Female Only"
- ],
- [
- "UCLA_BHHBF2_LIVER_MALE",
- "UCLA BHHBF2 Liver Male Only"
- ],
- [
- "UCLA_BHF2_LIVER_FEMALE",
- "UCLA BHF2 Liver Female mlratio"
- ],
- [
- "UCLA_BHHBF2_LIVER_2005",
- "UCLA BHHBF2 Liver (2005) mlratio **"
- ],
- [
- "UCLA_CTB6B6CTF2_LIVER_2005",
- "UCLA CTB6/B6CTF2 Liver (2005) mlratio **"
- ],
- [
- "UCLA_BHF2_LIVER_0605",
- "UCLA BHF2 Liver (June05) mlratio"
- ],
- [
- "UCLA_BDF2_LIVER_1999",
- "UCLA BDF2 Liver (1999) mlratio"
- ],
- [
- "LVF2_M_0704_R",
- "(B6 x BTBR)F2-ob/ob Liver mRNA M430 (Jul04) RMA"
- ],
- [
- "LVF2_M_0704_M",
- "(B6 x BTBR)F2-ob/ob Liver mRNA M430 (Jul04) MAS5"
- ],
- [
- "HLCF_0311",
- "GSE9588 Human Liver Normal (Mar11) Females"
]
],
"Peritoneal Fat": [
@@ -5682,38 +1826,6 @@
"SRxSHRSPF2": {
"Eye": [
[
- "Eye_AXBXA_1008_RankInv",
- "Eye AXBXA Illumina V6.2(Oct08) RankInv Beta"
- ],
- [
- "Eye_M2_0908_R",
- "Eye M430v2 (Sep08) RMA"
- ],
- [
- "Eye_M2_0908_R_NB",
- "Eye M430v2 Mutant Gpnmb (Sep08) RMA **"
- ],
- [
- "Eye_M2_0908_R_ND",
- "Eye M430v2 WT Gpnmb (Sep08) RMA **"
- ],
- [
- "Eye_M2_0908_WTWT",
- "Eye M430v2 WT WT (Sep08) RMA **"
- ],
- [
- "Eye_M2_0908_R_WT",
- "Eye M430v2 WT Tyrp1 (Sep08) RMA **"
- ],
- [
- "Eye_M2_0908_R_MT",
- "Eye M430v2 Mutant Tyrp1 (Sep08) RMA **"
- ],
- [
- "BXD_GLA_0911",
- "BXD Glaucoma Affy M430 2.0 Trial (Sep11) RMA **"
- ],
- [
"UIOWA_Eye_RMA_0906",
"UIOWA Eye mRNA RAE230v2 (Sep06) RMA"
]
diff --git a/wqflask/wqflask/views.py b/wqflask/wqflask/views.py
index e7e260fe..d639ed07 100644
--- a/wqflask/wqflask/views.py
+++ b/wqflask/wqflask/views.py
@@ -23,6 +23,10 @@ from base import webqtlFormData
from pprint import pformat as pf
+#import logging
+#logging.basicConfig(filename="/tmp/gn_log", level=logging.INFO)
+#_log = logging.getLogger("correlation")
+
@app.route("/")
def index_page():
@@ -33,7 +37,7 @@ def index_page():
@app.route("/new")
def new_index_page():
print("Sending index_page")
-
+
return render_template("new_index_page.html")
@app.route("/data_sharing")
@@ -54,6 +58,7 @@ def data_sharing_page():
@app.route("/search")
def search_page():
+ print("in search_page")
if 'info_database' in request.args:
print("Going to sharing_info_page")
template_vars = sharing_info_page()
@@ -63,7 +68,9 @@ def search_page():
else:
return render_template("data_sharing.html", **template_vars.__dict__)
else:
+ print("calling search_results.SearchResultPage")
the_search = search_results.SearchResultPage(request.args)
+ print("done calling")
return render_template("search_result_page.html", **the_search.__dict__)