diff options
| -rw-r--r-- | wqflask/maintenance/print_benchmark.py | 43 | ||||
| -rw-r--r-- | wqflask/wqflask/my_pylmm/pyLMM/process_plink.py | 6 |
2 files changed, 48 insertions, 1 deletions
diff --git a/wqflask/maintenance/print_benchmark.py b/wqflask/maintenance/print_benchmark.py new file mode 100644 index 00000000..540e0904 --- /dev/null +++ b/wqflask/maintenance/print_benchmark.py @@ -0,0 +1,43 @@ +#!/usr/bin/python + +from __future__ import absolute_import, print_function, division + +import time + +from pprint import pformat as pf + + +class TheCounter(object): + Counters = {} + + def __init__(self): + start_time = time.time() + for counter in range(170000): + self.print_it(counter) + self.time_took = time.time() - start_time + TheCounter.Counters[self.__class__.__name__] = self.time_took + +class PrintAll(TheCounter): + def print_it(self, counter): + print(counter) + +class PrintSome(TheCounter): + def print_it(self, counter): + if counter % 1000 == 0: + print(counter) + +class PrintNone(TheCounter): + def print_it(self, counter): + pass + + +def new_main(): + print("Running new_main") + tests = [PrintAll, PrintSome, PrintNone] + for test in tests: + test() + + print(pf(TheCounter.Counters)) + +if __name__ == '__main__': + new_main() \ No newline at end of file diff --git a/wqflask/wqflask/my_pylmm/pyLMM/process_plink.py b/wqflask/wqflask/my_pylmm/pyLMM/process_plink.py index 5ce7adbc..8f7ad243 100644 --- a/wqflask/wqflask/my_pylmm/pyLMM/process_plink.py +++ b/wqflask/wqflask/my_pylmm/pyLMM/process_plink.py @@ -13,6 +13,9 @@ plink_pickled = Redis.lpop("plink_inputs") plink_data = pickle.loads(plink_pickled) +identifier = plink_data['identifier'] +print("identifier: ", identifier) + ps, ts = lmm.human_association(snp, n, @@ -21,4 +24,5 @@ ps, ts = lmm.human_association(snp, pheno_vector, covariate_matrix, kinship_matrix, - refit) \ No newline at end of file + refit) + |