diff options
| -rw-r--r-- | wqflask/wqflask/my_pylmm/pyLMM/lmm.py | 11 |
1 files changed, 6 insertions, 5 deletions
diff --git a/wqflask/wqflask/my_pylmm/pyLMM/lmm.py b/wqflask/wqflask/my_pylmm/pyLMM/lmm.py index 6fff5f1d..618f8332 100644 --- a/wqflask/wqflask/my_pylmm/pyLMM/lmm.py +++ b/wqflask/wqflask/my_pylmm/pyLMM/lmm.py @@ -854,22 +854,23 @@ def gwas_with_redis(key,species,new_code=True): debug("Updating REDIS percent_complete=%d" % (round(i*100.0/total))) progress_set_func(update_tempdata) - def narray(key): - print(key) - v = params[key] + def narray(t): + info("Type is "+t) + v = params[t] if v is not None: v = np.array(v).astype(np.float) print(v) return v - def narrayT(key): - m = narray(key) + def narrayT(t): + m = narray(t) if m is not None: return m.T return m # We are transposing before we enter run_gwas - this should happen on the webserver # side (or when reading data from file) + print(params) k = narray('kinship_matrix') g = narrayT('genotype_matrix') y = narray('pheno_vector') |