diff options
| -rw-r--r-- | .gitignore | 4 | ||||
| -rw-r--r-- | MANIFEST.in | 262 | ||||
| -rwxr-xr-x | setup.py | 8 | ||||
| -rw-r--r-- | wqflask/__init__.py | 2 |
4 files changed, 276 insertions, 0 deletions
@@ -7,4 +7,8 @@ web/new_genotypes/HSNIH.json wqflask/secure_server.py wqflask/base/webqtlConfig.py +build/ +dist/ +*.egg-info/ +EGG-INFO/ wqflask/output/* diff --git a/MANIFEST.in b/MANIFEST.in new file mode 100644 index 00000000..f4ea2316 --- /dev/null +++ b/MANIFEST.in @@ -0,0 +1,262 @@ +include wqflask/* +include wqflask/other_config/* +include wqflask/other_config/nginx_conf/* +include wqflask/cfg/* +include wqflask/maintenance/* +include wqflask/maintenance/dataset/* +include wqflask/maintenance/dataset/datasampledir/* +include wqflask/maintenance/dataset/datasampledir/load_phenotypes/* +include wqflask/maintenance/dataset/datasampledir/load_genotypes/* +include wqflask/utility/* +include wqflask/wqflask/* +include wqflask/wqflask/templates/* +include wqflask/wqflask/templates/admin/* +include wqflask/wqflask/templates/email/* +include wqflask/wqflask/templates/collections/* +include wqflask/wqflask/templates/new_security/* +include wqflask/wqflask/correlation/* +include wqflask/wqflask/interval_mapping/* +include wqflask/wqflask/interval_analyst/* +include wqflask/wqflask/my_pylmm/* +include wqflask/wqflask/my_pylmm/scripts/* +include wqflask/wqflask/my_pylmm/pyLMM/* +include wqflask/wqflask/my_pylmm/data/* +include wqflask/wqflask/static/* +include wqflask/wqflask/static/dbdoc/* +include wqflask/wqflask/static/new/* +include wqflask/wqflask/static/new/js_external/* +include wqflask/wqflask/static/new/js_external/zxcvbn/* +include wqflask/wqflask/static/new/css/* +include wqflask/wqflask/static/new/javascript/* +include wqflask/wqflask/static/new/javascript/node_modules/* +include wqflask/wqflask/static/new/javascript/node_modules/.bin/* +include wqflask/wqflask/static/new/packages/* +include wqflask/wqflask/static/new/packages/ValidationPlugin/* +include wqflask/wqflask/static/new/packages/ValidationPlugin/dist/* +include wqflask/wqflask/static/new/packages/ValidationPlugin/lib/* +include wqflask/wqflask/static/new/packages/ValidationPlugin/localization/* +include wqflask/wqflask/static/new/packages/ValidationPlugin/demo/* +include wqflask/wqflask/static/new/packages/ValidationPlugin/demo/marketo/* +include wqflask/wqflask/static/new/packages/ValidationPlugin/demo/marketo/images/* +include wqflask/wqflask/static/new/packages/ValidationPlugin/demo/captcha/* +include wqflask/wqflask/static/new/packages/ValidationPlugin/demo/captcha/fonts/* +include wqflask/wqflask/static/new/packages/ValidationPlugin/demo/captcha/images/* +include wqflask/wqflask/static/new/packages/ValidationPlugin/demo/images/* +include wqflask/wqflask/static/new/packages/ValidationPlugin/demo/tabs/* +include wqflask/wqflask/static/new/packages/ValidationPlugin/demo/js/* +include wqflask/wqflask/static/new/packages/ValidationPlugin/demo/login/* +include wqflask/wqflask/static/new/packages/ValidationPlugin/demo/login/images/* +include wqflask/wqflask/static/new/packages/ValidationPlugin/demo/css/* +include wqflask/wqflask/static/new/packages/ValidationPlugin/demo/milk/* +include wqflask/wqflask/static/new/packages/ValidationPlugin/demo/multipart/* +include wqflask/wqflask/static/new/packages/ValidationPlugin/demo/multipart/js/* +include wqflask/wqflask/static/new/packages/ValidationPlugin/demo/tinymce/* +include wqflask/wqflask/static/new/packages/ValidationPlugin/demo/tinymce/themes/* +include wqflask/wqflask/static/new/packages/ValidationPlugin/demo/tinymce/themes/simple/* +include wqflask/wqflask/static/new/packages/ValidationPlugin/demo/tinymce/themes/simple/img/* +include wqflask/wqflask/static/new/packages/ValidationPlugin/demo/tinymce/themes/simple/langs/* +include wqflask/wqflask/static/new/packages/ValidationPlugin/demo/tinymce/themes/simple/skins/* +include wqflask/wqflask/static/new/packages/ValidationPlugin/demo/tinymce/themes/simple/skins/default/* +include wqflask/wqflask/static/new/packages/ValidationPlugin/test/* +include wqflask/wqflask/static/new/packages/ValidationPlugin/test/qunit/* +include wqflask/wqflask/static/new/packages/ValidationPlugin/test/selects/* +include wqflask/wqflask/static/new/packages/ValidationPlugin/test/firebug/* +include wqflask/wqflask/static/new/packages/nvd3/* +include wqflask/wqflask/static/new/packages/noUiSlider/* +include wqflask/wqflask/static/new/packages/DataTables/* +include wqflask/wqflask/static/new/packages/DataTables/images/* +include wqflask/wqflask/static/new/packages/DataTables/js/* +include wqflask/wqflask/static/new/packages/DataTables/css/* +include wqflask/wqflask/static/new/packages/DataTables/src/* +include wqflask/wqflask/static/new/packages/DataTables/src/api/* +include wqflask/wqflask/static/new/packages/DataTables/src/core/* +include wqflask/wqflask/static/new/packages/DataTables/src/ext/* +include wqflask/wqflask/static/new/packages/DataTables/src/model/* +include wqflask/wqflask/static/new/packages/DataTables/extensions/* +include wqflask/wqflask/static/new/packages/DataTables/unit_testing/* +include wqflask/wqflask/static/new/packages/DataTables/unit_testing/templates/* +include wqflask/wqflask/static/new/packages/DataTables/unit_testing/performance/* +include wqflask/wqflask/static/new/packages/DataTables/unit_testing/tests/* +include wqflask/wqflask/static/new/packages/DataTables/unit_testing/tests/1_dom/* +include wqflask/wqflask/static/new/packages/DataTables/unit_testing/tests_onhold/* +include wqflask/wqflask/static/new/packages/DataTables/unit_testing/tests_onhold/5_ajax_objects/* +include wqflask/wqflask/static/new/packages/DataTables/unit_testing/tests_onhold/3_ajax/* +include wqflask/wqflask/static/new/packages/DataTables/unit_testing/tests_onhold/2_js/* +include wqflask/wqflask/static/new/packages/DataTables/unit_testing/tests_onhold/4_server-side/* +include wqflask/wqflask/static/new/packages/DataTables/unit_testing/tests_onhold/6_delayed_rendering/* +include wqflask/wqflask/static/new/packages/DataTables/unit_testing/tests_onhold/1_dom/* +include wqflask/wqflask/static/packages/* +include wqflask/wqflask/static/packages/TableTools/* +include wqflask/wqflask/static/packages/TableTools/media/* +include wqflask/wqflask/static/packages/TableTools/media/images/* +include wqflask/wqflask/static/packages/TableTools/media/images/psd/* +include wqflask/wqflask/static/packages/TableTools/media/swf/* +include wqflask/wqflask/static/packages/TableTools/media/js/* +include wqflask/wqflask/static/packages/TableTools/media/css/* +include wqflask/wqflask/static/packages/TableTools/media/as3/* +include wqflask/wqflask/static/packages/TableTools/media/as3/lib/* +include wqflask/wqflask/static/packages/underscore/* +include wqflask/wqflask/static/packages/bootstrap/* +include wqflask/wqflask/static/packages/bootstrap/fonts/* +include wqflask/wqflask/static/packages/bootstrap/js/* +include wqflask/wqflask/static/packages/bootstrap/css/* +include wqflask/wqflask/static/packages/bootstrap/img/* +include wqflask/wqflask/static/packages/novus-nvd3-d51729c/* +include wqflask/wqflask/static/packages/novus-nvd3-d51729c/lib/* +include wqflask/wqflask/static/packages/novus-nvd3-d51729c/deprecated/* +include wqflask/wqflask/static/packages/novus-nvd3-d51729c/deprecated/charts/* +include wqflask/wqflask/static/packages/novus-nvd3-d51729c/test/* +include wqflask/wqflask/static/packages/novus-nvd3-d51729c/src/* +include wqflask/wqflask/static/packages/novus-nvd3-d51729c/src/models/* +include wqflask/wqflask/static/packages/novus-nvd3-d51729c/src/models/backup/* +include wqflask/wqflask/static/packages/novus-nvd3-d51729c/examples/* +include wqflask/wqflask/static/packages/novus-nvd3-d51729c/examples/images/* +include wqflask/wqflask/static/packages/DT_bootstrap/* +include wqflask/wqflask/static/packages/ckeditor/* +include wqflask/wqflask/static/packages/ckeditor/lang/* +include wqflask/wqflask/static/packages/ckeditor/adapters/* +include wqflask/wqflask/static/packages/ckeditor/skins/* +include wqflask/wqflask/static/packages/ckeditor/skins/moono/* +include wqflask/wqflask/static/packages/ckeditor/skins/moono/images/* +include wqflask/wqflask/static/packages/ckeditor/skins/moono/images/hidpi/* +include wqflask/wqflask/static/packages/ckeditor/plugins/* +include wqflask/wqflask/static/packages/ckeditor/plugins/div/* +include wqflask/wqflask/static/packages/ckeditor/plugins/div/dialogs/* +include wqflask/wqflask/static/packages/ckeditor/plugins/a11yhelp/* +include wqflask/wqflask/static/packages/ckeditor/plugins/a11yhelp/dialogs/* +include wqflask/wqflask/static/packages/ckeditor/plugins/a11yhelp/dialogs/lang/* +include wqflask/wqflask/static/packages/ckeditor/plugins/templates/* +include wqflask/wqflask/static/packages/ckeditor/plugins/templates/templates/* +include wqflask/wqflask/static/packages/ckeditor/plugins/templates/templates/images/* +include wqflask/wqflask/static/packages/ckeditor/plugins/templates/dialogs/* +include wqflask/wqflask/static/packages/ckeditor/plugins/find/* +include wqflask/wqflask/static/packages/ckeditor/plugins/find/dialogs/* +include wqflask/wqflask/static/packages/ckeditor/plugins/scayt/* +include wqflask/wqflask/static/packages/ckeditor/plugins/scayt/dialogs/* +include wqflask/wqflask/static/packages/ckeditor/plugins/dialog/* +include wqflask/wqflask/static/packages/ckeditor/plugins/flash/* +include wqflask/wqflask/static/packages/ckeditor/plugins/flash/dialogs/* +include wqflask/wqflask/static/packages/ckeditor/plugins/flash/images/* +include wqflask/wqflask/static/packages/ckeditor/plugins/about/* +include wqflask/wqflask/static/packages/ckeditor/plugins/about/dialogs/* +include wqflask/wqflask/static/packages/ckeditor/plugins/about/dialogs/hidpi/* +include wqflask/wqflask/static/packages/ckeditor/plugins/pastefromword/* +include wqflask/wqflask/static/packages/ckeditor/plugins/pastefromword/filter/* +include wqflask/wqflask/static/packages/ckeditor/plugins/specialchar/* +include wqflask/wqflask/static/packages/ckeditor/plugins/specialchar/dialogs/* +include wqflask/wqflask/static/packages/ckeditor/plugins/specialchar/dialogs/lang/* +include wqflask/wqflask/static/packages/ckeditor/plugins/wsc/* +include wqflask/wqflask/static/packages/ckeditor/plugins/wsc/dialogs/* +include wqflask/wqflask/static/packages/ckeditor/plugins/forms/* +include wqflask/wqflask/static/packages/ckeditor/plugins/forms/dialogs/* +include wqflask/wqflask/static/packages/ckeditor/plugins/forms/images/* +include wqflask/wqflask/static/packages/ckeditor/plugins/link/* +include wqflask/wqflask/static/packages/ckeditor/plugins/link/dialogs/* +include wqflask/wqflask/static/packages/ckeditor/plugins/link/images/* +include wqflask/wqflask/static/packages/ckeditor/plugins/link/images/hidpi/* +include wqflask/wqflask/static/packages/ckeditor/plugins/iframe/* +include wqflask/wqflask/static/packages/ckeditor/plugins/iframe/dialogs/* +include wqflask/wqflask/static/packages/ckeditor/plugins/iframe/images/* +include wqflask/wqflask/static/packages/ckeditor/plugins/colordialog/* +include wqflask/wqflask/static/packages/ckeditor/plugins/colordialog/dialogs/* +include wqflask/wqflask/static/packages/ckeditor/plugins/table/* +include wqflask/wqflask/static/packages/ckeditor/plugins/table/dialogs/* +include wqflask/wqflask/static/packages/ckeditor/plugins/smiley/* +include wqflask/wqflask/static/packages/ckeditor/plugins/smiley/dialogs/* +include wqflask/wqflask/static/packages/ckeditor/plugins/smiley/images/* +include wqflask/wqflask/static/packages/ckeditor/plugins/liststyle/* +include wqflask/wqflask/static/packages/ckeditor/plugins/liststyle/dialogs/* +include wqflask/wqflask/static/packages/ckeditor/plugins/clipboard/* +include wqflask/wqflask/static/packages/ckeditor/plugins/clipboard/dialogs/* +include wqflask/wqflask/static/packages/ckeditor/plugins/showblocks/* +include wqflask/wqflask/static/packages/ckeditor/plugins/showblocks/images/* +include wqflask/wqflask/static/packages/ckeditor/plugins/pagebreak/* +include wqflask/wqflask/static/packages/ckeditor/plugins/pagebreak/images/* +include wqflask/wqflask/static/packages/ckeditor/plugins/magicline/* +include wqflask/wqflask/static/packages/ckeditor/plugins/magicline/images/* +include wqflask/wqflask/static/packages/ckeditor/plugins/magicline/images/hidpi/* +include wqflask/wqflask/static/packages/ckeditor/plugins/preview/* +include wqflask/wqflask/static/packages/ckeditor/plugins/image/* +include wqflask/wqflask/static/packages/ckeditor/plugins/image/dialogs/* +include wqflask/wqflask/static/packages/ckeditor/plugins/image/images/* +include wqflask/wqflask/static/packages/ckeditor/plugins/tabletools/* +include wqflask/wqflask/static/packages/ckeditor/plugins/tabletools/dialogs/* +include wqflask/wqflask/static/packages/ckeditor/samples/* +include wqflask/wqflask/static/packages/ckeditor/samples/assets/* +include wqflask/wqflask/static/packages/ckeditor/samples/assets/uilanguages/* +include wqflask/wqflask/static/packages/ckeditor/samples/assets/outputxhtml/* +include wqflask/wqflask/static/packages/ckeditor/samples/assets/inlineall/* +include wqflask/wqflask/static/packages/ckeditor/samples/plugins/* +include wqflask/wqflask/static/packages/ckeditor/samples/plugins/dialog/* +include wqflask/wqflask/static/packages/ckeditor/samples/plugins/dialog/assets/* +include wqflask/wqflask/static/packages/ckeditor/samples/plugins/enterkey/* +include wqflask/wqflask/static/packages/ckeditor/samples/plugins/toolbar/* +include wqflask/wqflask/static/packages/ckeditor/samples/plugins/magicline/* +include wqflask/wqflask/static/packages/ckeditor/samples/plugins/htmlwriter/* +include wqflask/wqflask/static/packages/ckeditor/samples/plugins/htmlwriter/assets/* +include wqflask/wqflask/static/packages/ckeditor/samples/plugins/htmlwriter/assets/outputforflash/* +include wqflask/wqflask/static/packages/ckeditor/samples/plugins/wysiwygarea/* +include wqflask/wqflask/static/packages/colorbox/* +include wqflask/wqflask/static/packages/colorbox/example5/* +include wqflask/wqflask/static/packages/colorbox/example5/images/* +include wqflask/wqflask/static/packages/colorbox/example4/* +include wqflask/wqflask/static/packages/colorbox/example4/images/* +include wqflask/wqflask/static/packages/colorbox/example1/* +include wqflask/wqflask/static/packages/colorbox/example1/images/* +include wqflask/wqflask/static/packages/colorbox/content/* +include wqflask/wqflask/static/packages/colorbox/example3/* +include wqflask/wqflask/static/packages/colorbox/example3/images/* +include wqflask/wqflask/static/packages/colorbox/example2/* +include wqflask/wqflask/static/packages/colorbox/example2/images/* +include wqflask/wqflask/static/packages/colorbox/i18n/* +include wqflask/wqflask/static/packages/node/* +include wqflask/wqflask/static/packages/node/tools/* +include wqflask/wqflask/static/packages/node/tools/closure_linter/* +include wqflask/wqflask/static/packages/bootstrap-old/* +include wqflask/wqflask/static/packages/bootstrap-old/js/* +include wqflask/wqflask/static/packages/bootstrap-old/css/* +include wqflask/wqflask/static/packages/bootstrap-old/img/* +include wqflask/wqflask/static/packages/pragmaticly-smart-time-ago-40fa376/* +include wqflask/wqflask/static/packages/pragmaticly-smart-time-ago-40fa376/lib/* +include wqflask/wqflask/static/packages/pragmaticly-smart-time-ago-40fa376/lib/locales/* +include wqflask/wqflask/static/packages/pragmaticly-smart-time-ago-40fa376/test/* +include wqflask/wqflask/static/packages/pragmaticly-smart-time-ago-40fa376/test/lib/* +include wqflask/wqflask/static/packages/pragmaticly-smart-time-ago-40fa376/test/specs/* +include wqflask/wqflask/static/packages/pragmaticly-smart-time-ago-40fa376/src/* +include wqflask/wqflask/static/packages/pragmaticly-smart-time-ago-40fa376/src/locales/* +include wqflask/wqflask/static/packages/jqplot/* +include wqflask/wqflask/static/packages/jqplot/docs/* +include wqflask/wqflask/static/packages/jqplot/docs/index/* +include wqflask/wqflask/static/packages/jqplot/docs/styles/* +include wqflask/wqflask/static/packages/jqplot/docs/files/* +include wqflask/wqflask/static/packages/jqplot/docs/files/images/* +include wqflask/wqflask/static/packages/jqplot/docs/files/plugins/* +include wqflask/wqflask/static/packages/jqplot/docs/search/* +include wqflask/wqflask/static/packages/jqplot/docs/javascript/* +include wqflask/wqflask/static/packages/jqplot/examples/* +include wqflask/wqflask/static/packages/jqplot/examples/colorpicker/* +include wqflask/wqflask/static/packages/jqplot/examples/colorpicker/images/* +include wqflask/wqflask/static/packages/jqplot/examples/images/* +include wqflask/wqflask/static/packages/jqplot/examples/jquery-ui/* +include wqflask/wqflask/static/packages/jqplot/examples/jquery-ui/js/* +include wqflask/wqflask/static/packages/jqplot/examples/jquery-ui/css/* +include wqflask/wqflask/static/packages/jqplot/examples/jquery-ui/css/smoothness/* +include wqflask/wqflask/static/packages/jqplot/examples/jquery-ui/css/smoothness/images/* +include wqflask/wqflask/static/packages/jqplot/examples/jquery-ui/css/ui-lightness/* +include wqflask/wqflask/static/packages/jqplot/examples/jquery-ui/css/ui-lightness/images/* +include wqflask/wqflask/static/packages/jqplot/examples/syntaxhighlighter/* +include wqflask/wqflask/static/packages/jqplot/examples/syntaxhighlighter/scripts/* +include wqflask/wqflask/static/packages/jqplot/examples/syntaxhighlighter/styles/* +include wqflask/wqflask/static/packages/jqplot/plugins/* +include wqflask/wqflask/correlation_matrix/* +include wqflask/wqflask/show_trait/* +include wqflask/wqflask/wgcna/* +include wqflask/wqflask/marker_regression/* +include wqflask/wqflask/heatmap/* +include wqflask/flask_security/* +include wqflask/flask_security/templates/* +include wqflask/flask_security/templates/security/* +include wqflask/flask_security/templates/security/email/* +include wqflask/dbFunction/* +include wqflask/basicStatistics/* +include wqflask/base/* diff --git a/setup.py b/setup.py new file mode 100755 index 00000000..1b11acc0 --- /dev/null +++ b/setup.py @@ -0,0 +1,8 @@ +from setuptools import setup, find_packages + +setup(name='genenetwork2', + version='2.0', + include_package_data=True, + # packages=find_packages() + packages=['wqflask'] + ) diff --git a/wqflask/__init__.py b/wqflask/__init__.py new file mode 100644 index 00000000..4aa081d3 --- /dev/null +++ b/wqflask/__init__.py @@ -0,0 +1,2 @@ +import logging +from wqflask import app |