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-rwxr-xr-xwqflask/wqflask/interval_mapping/interval_mapping.py46
-rwxr-xr-xwqflask/wqflask/marker_regression/marker_regression.py40
-rw-r--r--wqflask/wqflask/static/new/javascript/lod_chart.js17
-rw-r--r--wqflask/wqflask/static/new/javascript/panelutil.js13
-rwxr-xr-xwqflask/wqflask/static/new/javascript/show_trait_mapping_tools.coffee22
-rwxr-xr-xwqflask/wqflask/static/new/javascript/show_trait_mapping_tools.js482
-rw-r--r--wqflask/wqflask/static/new/packages/DataTables/extensions/dataTables.colResize.js1669
-rwxr-xr-xwqflask/wqflask/templates/collections/list.html16
-rwxr-xr-xwqflask/wqflask/templates/collections/view.html15
-rwxr-xr-xwqflask/wqflask/templates/correlation_page.html16
-rwxr-xr-xwqflask/wqflask/templates/index_page.html15
-rwxr-xr-xwqflask/wqflask/templates/marker_regression.html60
-rwxr-xr-xwqflask/wqflask/templates/search_result_page.html21
-rwxr-xr-xwqflask/wqflask/templates/show_trait.html9
-rwxr-xr-xwqflask/wqflask/templates/show_trait_edit_data.html10
-rwxr-xr-xwqflask/wqflask/templates/show_trait_mapping_tools.html4
16 files changed, 1176 insertions, 1279 deletions
diff --git a/wqflask/wqflask/interval_mapping/interval_mapping.py b/wqflask/wqflask/interval_mapping/interval_mapping.py
index 672a9401..79cb1481 100755
--- a/wqflask/wqflask/interval_mapping/interval_mapping.py
+++ b/wqflask/wqflask/interval_mapping/interval_mapping.py
@@ -53,6 +53,9 @@ class IntervalMapping(object):
self.set_options(start_vars)
+ self.score_type = "LRS"
+ self.cutoff = 3
+
self.json_data = {}
self.json_data['lodnames'] = ['lod.hk']
self.gen_reaper_results(tempdata)
@@ -65,22 +68,17 @@ class IntervalMapping(object):
chromosome_mb_lengths[key] = self.species.chromosomes.chromosomes[key].mb_length
- #print("self.qtl_results:", self.qtl_results)
-
print("JSON DATA:", self.json_data)
- #os.chdir(webqtlConfig.TMPDIR)
json_filename = webqtlUtil.genRandStr(prefix="intmap_")
json.dumps(self.json_data, webqtlConfig.TMPDIR + json_filename)
self.js_data = dict(
- result_score_type = "LRS",
+ result_score_type = self.score_type,
manhattan_plot = self.manhattan_plot,
- additive = self.additive,
chromosomes = chromosome_mb_lengths,
qtl_results = self.qtl_results,
json_data = self.json_data
- #lrs_lod = self.lrs_lod,
)
def set_options(self, start_vars):
@@ -158,7 +156,6 @@ class IntervalMapping(object):
self.json_data['chr'] = []
self.json_data['pos'] = []
self.json_data['lod.hk'] = []
- self.json_data['additive'] = []
self.json_data['markernames'] = []
for qtl in reaper_results:
reaper_locus = qtl.locus
@@ -166,6 +163,7 @@ class IntervalMapping(object):
self.json_data['lod.hk'].append(qtl.lrs)
self.json_data['markernames'].append(reaper_locus.name)
if self.additive:
+ self.json_data['additive'] = []
self.json_data['additive'].append(qtl.additive)
locus = {"name":reaper_locus.name, "chr":reaper_locus.chr, "cM":reaper_locus.cM, "Mb":reaper_locus.Mb}
qtl = {"lrs": qtl.lrs, "locus": locus, "additive": qtl.additive}
@@ -206,8 +204,9 @@ class IntervalMapping(object):
self.json_data['chr'] = []
self.json_data['pos'] = []
self.json_data['lod.hk'] = []
- self.json_data['additive'] = []
self.json_data['markernames'] = []
+ if self.additive:
+ self.json_data['additive'] = []
#Need to convert the QTL objects that qtl reaper returns into a json serializable dictionary
self.qtl_results = []
@@ -223,37 +222,6 @@ class IntervalMapping(object):
qtl = {"lrs_value": qtl.lrs, "chr":reaper_locus.chr, "Mb":reaper_locus.Mb,
"cM":reaper_locus.cM, "name":reaper_locus.name, "additive":qtl.additive}
self.qtl_results.append(qtl)
-
-
- def gen_qtl_results_2(self, tempdata):
- """Generates qtl results for plotting interval map"""
-
- self.dataset.group.get_markers()
- self.dataset.read_genotype_file()
-
- pheno_vector = np.array([val == "x" and np.nan or float(val) for val in self.vals])
-
- #if self.dataset.group.species == "human":
- # p_values, t_stats = self.gen_human_results(pheno_vector, tempdata)
- #else:
- genotype_data = [marker['genotypes'] for marker in self.dataset.group.markers.markers]
-
- no_val_samples = self.identify_empty_samples()
- trimmed_genotype_data = self.trim_genotypes(genotype_data, no_val_samples)
-
- genotype_matrix = np.array(trimmed_genotype_data).T
-
- t_stats, p_values = lmm.run(
- pheno_vector,
- genotype_matrix,
- restricted_max_likelihood=True,
- refit=False,
- temp_data=tempdata
- )
-
- self.dataset.group.markers.add_pvalues(p_values)
-
- self.qtl_results = self.dataset.group.markers.markers
def identify_empty_samples(self):
diff --git a/wqflask/wqflask/marker_regression/marker_regression.py b/wqflask/wqflask/marker_regression/marker_regression.py
index c003f5e8..850dfc7f 100755
--- a/wqflask/wqflask/marker_regression/marker_regression.py
+++ b/wqflask/wqflask/marker_regression/marker_regression.py
@@ -79,9 +79,9 @@ class MarkerRegression(object):
included_markers, p_values = gemma_mapping.run_gemma(self.dataset, self.samples, self.vals)
self.dataset.group.get_specified_markers(markers = included_markers)
self.dataset.group.markers.add_pvalues(p_values)
- qtl_results = self.dataset.group.markers.markers
+ results = self.dataset.group.markers.markers
elif self.mapping_method == "rqtl_plink":
- qtl_results = self.run_rqtl_plink()
+ results = self.run_rqtl_plink()
elif self.mapping_method == "rqtl_geno":
if start_vars['num_perm'] == "":
self.num_perm = 0
@@ -95,32 +95,32 @@ class MarkerRegression(object):
if start_vars['pair_scan'] == "true":
self.pair_scan = True
- qtl_results = self.run_rqtl_geno()
- print("qtl_results:", qtl_results)
+ results = self.run_rqtl_geno()
+ print("qtl_results:", results)
elif self.mapping_method == "plink":
- qtl_results = self.run_plink()
- #print("qtl_results:", pf(qtl_results))
+ results = self.run_plink()
+ #print("qtl_results:", pf(results))
elif self.mapping_method == "pylmm":
print("RUNNING PYLMM")
self.num_perm = start_vars['num_perm']
if self.num_perm != "":
if int(self.num_perm) > 0:
self.run_permutations(str(temp_uuid))
- qtl_results = self.gen_data(str(temp_uuid))
+ results = self.gen_data(str(temp_uuid))
else:
print("RUNNING NOTHING")
if self.pair_scan == True:
- self.filtered_markers = []
+ self.qtl_results = []
highest_chr = 1 #This is needed in order to convert the highest chr to X/Y
- for marker in qtl_results:
+ for marker in results:
if marker['chr1'] > 0 or marker['chr1'] == "X" or marker['chr1'] == "X/Y":
if marker['chr1'] > highest_chr or marker['chr1'] == "X" or marker['chr1'] == "X/Y":
highest_chr = marker['chr1']
if 'lod_score' in marker:
- self.filtered_markers.append(marker)
+ self.qtl_results.append(marker)
- for qtl in enumerate(self.filtered_markers):
+ for qtl in enumerate(self.qtl_results):
self.json_data['chr1'].append(str(qtl['chr1']))
self.json_data['chr2'].append(str(qtl['chr2']))
self.json_data['Mb'].append(qtl['Mb'])
@@ -132,19 +132,20 @@ class MarkerRegression(object):
data_set = self.dataset.name,
maf = self.maf,
manhattan_plot = self.manhattan_plot,
- qtl_results = self.filtered_markers,
+ qtl_results = self.qtl_results,
)
else:
- self.lod_cutoff = 2
- self.filtered_markers = []
+ self.score_type = "LRS"
+ self.cutoff = 2
+ self.qtl_results = []
highest_chr = 1 #This is needed in order to convert the highest chr to X/Y
- for marker in qtl_results:
+ for marker in results:
if marker['chr'] > 0 or marker['chr'] == "X" or marker['chr'] == "X/Y":
if marker['chr'] > highest_chr or marker['chr'] == "X" or marker['chr'] == "X/Y":
highest_chr = marker['chr']
if 'lod_score' in marker:
- self.filtered_markers.append(marker)
+ self.qtl_results.append(marker)
self.json_data['chr'] = []
self.json_data['pos'] = []
@@ -155,8 +156,7 @@ class MarkerRegression(object):
self.json_data['significant'] = self.significant
#Need to convert the QTL objects that qtl reaper returns into a json serializable dictionary
- self.qtl_results = []
- for index, qtl in enumerate(self.filtered_markers):
+ for index, qtl in enumerate(self.qtl_results):
if index<40:
print("lod score is:", qtl['lod_score'])
if qtl['chr'] == highest_chr and highest_chr != "X" and highest_chr != "X/Y":
@@ -179,14 +179,14 @@ class MarkerRegression(object):
self.js_data = dict(
- result_score_type = "LOD",
+ result_score_type = self.score_type,
json_data = self.json_data,
this_trait = self.this_trait.name,
data_set = self.dataset.name,
maf = self.maf,
manhattan_plot = self.manhattan_plot,
chromosomes = chromosome_mb_lengths,
- qtl_results = self.filtered_markers,
+ qtl_results = self.qtl_results,
)
diff --git a/wqflask/wqflask/static/new/javascript/lod_chart.js b/wqflask/wqflask/static/new/javascript/lod_chart.js
index 631d8632..35b37070 100644
--- a/wqflask/wqflask/static/new/javascript/lod_chart.js
+++ b/wqflask/wqflask/static/new/javascript/lod_chart.js
@@ -20,7 +20,6 @@ lodchart = function() {
};
titlepos = 20;
manhattanPlot = false;
- additive = false;
ylim = null;
additive_ylim = null;
nyticks = 5;
@@ -70,7 +69,8 @@ lodchart = function() {
return results;
})();
ylim = ylim != null ? ylim : [0, d3.max(data[lodvarname])];
- if (additive) {
+
+ if ('additive' in data) {
data['additive'] = (function() {
var j, len, ref, results;
ref = data['additive'];
@@ -91,7 +91,7 @@ lodchart = function() {
g.append("rect").attr("x", margin.left).attr("y", margin.top).attr("height", height).attr("width", width).attr("fill", darkrect).attr("stroke", "none");
yscale.domain(ylim).range([height + margin.top, margin.top + margin.inner]);
yticks = yticks != null ? yticks : yscale.ticks(nyticks);
- if (additive) {
+ if ('additive' in data) {
additive_yscale.domain(additive_ylim).range([height + margin.top, margin.top + margin.inner + height / 2]);
additive_yticks = additive_yticks != null ? additive_yticks : additive_yscale.ticks(nyticks);
}
@@ -147,7 +147,7 @@ lodchart = function() {
return formatAxis(yticks)(d);
});
yaxis.append("text").attr("class", "title").attr("y", margin.top + height / 2).attr("x", margin.left - axispos.ytitle).text(ylab).attr("transform", rotate_ylab ? "rotate(270," + (margin.left - axispos.ytitle) + "," + (margin.top + height / 2) + ")" : "").attr("text-anchor", "middle").attr("fill", "slateblue");
- if (additive) {
+ if ('additive' in data) {
rotate_additive_ylab = rotate_additive_ylab != null ? rotate_additive_ylab : additive_ylab.length > 1;
additive_yaxis = g.append("g").attr("class", "y axis");
additive_yaxis.selectAll("empty").data(additive_yticks).enter().append("line").attr("y1", function(d) {
@@ -186,12 +186,12 @@ lodchart = function() {
return yscale(data.lodByChr[chr][i][lodcolumn]);
});
};
- if (additive) {
+ if ('additive' in data) {
additivecurve = function(chr, lodcolumn) {
return d3.svg.line().x(function(d) {
return xscale[chr](d);
}).y(function(d, i) {
- return additive_yscale(data.additiveByChr[chr][i][lodcolumn]);
+ return additive_yscale(data.additiveByChr[chr][i]);
});
};
}
@@ -203,7 +203,7 @@ lodchart = function() {
curves.append("path").datum(data.posByChr[chr[0]]).attr("d", lodcurve(chr[0], lodvarnum)).attr("stroke", lodlinecolor).attr("fill", "none").attr("stroke-width", linewidth).style("pointer-events", "none");
}
}
- if (additive) {
+ if ('additive' in data) {
ref1 = data.chrnames;
for (k = 0, len1 = ref1.length; k < len1; k++) {
chr = ref1[k];
@@ -430,9 +430,6 @@ lodchart = function() {
chart.yscale = function() {
return yscale;
};
- chart.additive = function() {
- return additive;
- };
chart.additive_yscale = function() {
return additive_yscale;
};
diff --git a/wqflask/wqflask/static/new/javascript/panelutil.js b/wqflask/wqflask/static/new/javascript/panelutil.js
index 7c14f4de..113512b4 100644
--- a/wqflask/wqflask/static/new/javascript/panelutil.js
+++ b/wqflask/wqflask/static/new/javascript/panelutil.js
@@ -47,12 +47,19 @@ reorgLodData = function(data, lodvarname) {
}
data.posByChr = {};
data.lodByChr = {};
+ if ('additive' in data){
+ data.additiveByChr = {};
+ }
_ref = data.chrnames;
for (i = _i = 0, _len = _ref.length; _i < _len; i = ++_i) {
chr = _ref[i];
data.posByChr[chr[0]] = [];
data.lodByChr[chr[0]] = [];
+ if ('additive' in data){
+ data.additiveByChr[chr[0]] = [];
+ }
_ref1 = data.pos;
+
for (j = _j = 0, _len1 = _ref1.length; _j < _len1; j = ++_j) {
pos = _ref1[j];
if (data.chr[j].toString() === chr[0]) {
@@ -71,6 +78,12 @@ reorgLodData = function(data, lodvarname) {
return _results;
})();
data.lodByChr[chr[0]].push(lodval);
+
+ if ('additive' in data){
+ addval = data['additive'][j]
+ data.additiveByChr[chr[0]].push(addval);
+ }
+
}
}
}
diff --git a/wqflask/wqflask/static/new/javascript/show_trait_mapping_tools.coffee b/wqflask/wqflask/static/new/javascript/show_trait_mapping_tools.coffee
index 16ca1886..d14fb98c 100755
--- a/wqflask/wqflask/static/new/javascript/show_trait_mapping_tools.coffee
+++ b/wqflask/wqflask/static/new/javascript/show_trait_mapping_tools.coffee
@@ -112,6 +112,11 @@ open_mapping_results = (data) ->
form.submit()
)
+outlier_text = "One or more outliers exist in this data set. Please review values before mapping. \
+ Including outliers when mapping may lead to misleading results. \
+ We recommend <A HREF=\"http://en.wikipedia.org/wiki/Winsorising\">winsorising</A> the outliers \
+ or simply deleting them."
+
showalert = (message,alerttype) ->
$('#alert_placeholder').append('<div id="alertdiv" class="alert ' + alerttype + '"><a class="close" data-dismiss="alert">×</a><span>'+message+'</span></div>')
@@ -126,6 +131,11 @@ $('input[name=display_all]').change(() =>
$('#suggestive').hide()
)
+$("#pylmm_mapping_compute").on("mouseover", =>
+ if ( $(".outlier").length and $(".outlier-alert").length < 1 )
+ showalert(outlier_text, "alert-success outlier-alert")
+)
+
$("#pylmm_compute").on("click", =>
$("#progress_bar_container").modal()
url = "/marker_regression"
@@ -140,8 +150,7 @@ $("#pylmm_compute").on("click", =>
# block_outliers()
do_ajax_post(url, form_data)
)
-
-
+
$("#rqtl_geno_compute").on("click", =>
$("#progress_bar_container").modal()
@@ -187,11 +196,12 @@ $("#gemma_compute").on("click", =>
do_ajax_post(url, form_data)
)
+$("#interval_mapping_compute").on("mouseover", =>
+ if ( $(".outlier").length and $(".outlier-alert").length < 1 )
+ showalert(outlier_text, "alert-success outlier-alert")
+)
+
$("#interval_mapping_compute").on("click", =>
- showalert("One or more outliers exist in this data set. Please review values before mapping. \
- Including outliers when mapping may lead to misleading results. \
- We recommend <A HREF=\"http://en.wikipedia.org/wiki/Winsorising\">winsorising</A> the outliers \
- or simply deleting them.", "alert-success")
console.log("In interval mapping")
$("#progress_bar_container").modal()
url = "/interval_mapping"
diff --git a/wqflask/wqflask/static/new/javascript/show_trait_mapping_tools.js b/wqflask/wqflask/static/new/javascript/show_trait_mapping_tools.js
index d6f4ba89..3be40a57 100755
--- a/wqflask/wqflask/static/new/javascript/show_trait_mapping_tools.js
+++ b/wqflask/wqflask/static/new/javascript/show_trait_mapping_tools.js
@@ -1,249 +1,269 @@
-// Generated by CoffeeScript 1.9.2
-var block_outliers, composite_mapping_fields, do_ajax_post, get_progress, mapping_method_fields, open_mapping_results, showalert, submit_special, toggle_enable_disable, update_time_remaining;
-
-submit_special = function() {
- var url;
- console.log("In submit_special");
- console.log("this is:", this);
- console.log("$(this) is:", $(this));
- url = $(this).data("url");
- console.log("url is:", url);
- $("#trait_data_form").attr("action", url);
- return $("#trait_data_form").submit();
-};
-
-update_time_remaining = function(percent_complete) {
- var minutes_remaining, now, period, total_seconds_remaining;
- now = new Date();
- period = now.getTime() - root.start_time;
- console.log("period is:", period);
- if (period > 8000) {
- total_seconds_remaining = (period / percent_complete * (100 - percent_complete)) / 1000;
- minutes_remaining = Math.round(total_seconds_remaining / 60);
- if (minutes_remaining < 3) {
- return $('#time_remaining').text(Math.round(total_seconds_remaining) + " seconds remaining");
- } else {
- return $('#time_remaining').text(minutes_remaining + " minutes remaining");
+// Generated by CoffeeScript 1.8.0
+(function() {
+ var block_outliers, composite_mapping_fields, do_ajax_post, get_progress, mapping_method_fields, open_mapping_results, outlier_text, showalert, submit_special, toggle_enable_disable, update_time_remaining;
+
+ submit_special = function() {
+ var url;
+ console.log("In submit_special");
+ console.log("this is:", this);
+ console.log("$(this) is:", $(this));
+ url = $(this).data("url");
+ console.log("url is:", url);
+ $("#trait_data_form").attr("action", url);
+ return $("#trait_data_form").submit();
+ };
+
+ update_time_remaining = function(percent_complete) {
+ var minutes_remaining, now, period, total_seconds_remaining;
+ now = new Date();
+ period = now.getTime() - root.start_time;
+ console.log("period is:", period);
+ if (period > 8000) {
+ total_seconds_remaining = (period / percent_complete * (100 - percent_complete)) / 1000;
+ minutes_remaining = Math.round(total_seconds_remaining / 60);
+ if (minutes_remaining < 3) {
+ return $('#time_remaining').text(Math.round(total_seconds_remaining) + " seconds remaining");
+ } else {
+ return $('#time_remaining').text(minutes_remaining + " minutes remaining");
+ }
}
- }
-};
-
-get_progress = function() {
- var params, params_str, temp_uuid, url;
- console.log("temp_uuid:", $("#temp_uuid").val());
- temp_uuid = $("#temp_uuid").val();
- params = {
- key: temp_uuid
};
- params_str = $.param(params);
- url = "/get_temp_data?" + params_str;
- console.log("url:", url);
- $.ajax({
- type: "GET",
- url: url,
- success: (function(_this) {
- return function(progress_data) {
- var percent_complete;
- percent_complete = progress_data['percent_complete'];
- console.log("in get_progress data:", progress_data);
- $('#marker_regression_progress').css("width", percent_complete + "%");
- if (root.start_time) {
- if (!isNaN(percent_complete)) {
- return update_time_remaining(percent_complete);
- }
- } else {
- return root.start_time = new Date().getTime();
- }
- };
- })(this)
- });
- return false;
-};
-block_outliers = function() {
- return $('.outlier').each((function(_this) {
- return function(_index, element) {
- return $(element).find('.trait_value_input').val('x');
+ get_progress = function() {
+ var params, params_str, temp_uuid, url;
+ console.log("temp_uuid:", $("#temp_uuid").val());
+ temp_uuid = $("#temp_uuid").val();
+ params = {
+ key: temp_uuid
};
- })(this));
-};
-
-do_ajax_post = function(url, form_data) {
- $.ajax({
- type: "POST",
- url: url,
- data: form_data,
- error: (function(_this) {
- return function(xhr, ajaxOptions, thrownError) {
- alert("Sorry, an error occurred");
- console.log(xhr);
- clearInterval(_this.my_timer);
- $('#progress_bar_container').modal('hide');
- $('#static_progress_bar_container').modal('hide');
- return $("body").html("We got an error.");
- };
- })(this),
- success: (function(_this) {
- return function(data) {
- clearInterval(_this.my_timer);
- $('#progress_bar_container').modal('hide');
- $('#static_progress_bar_container').modal('hide');
- return open_mapping_results(data);
- };
- })(this)
- });
- console.log("settingInterval");
- this.my_timer = setInterval(get_progress, 1000);
- return false;
-};
-
-open_mapping_results = function(data) {
- return $.colorbox({
- html: data,
- href: "#mapping_results_holder",
- height: "90%",
- width: "90%",
- onComplete: (function(_this) {
- return function() {
- var filename, getSvgXml;
- root.create_lod_chart();
- filename = "lod_chart_" + js_data.this_trait;
- getSvgXml = function() {
- var svg;
- svg = $("#topchart").find("svg")[0];
- return (new XMLSerializer).serializeToString(svg);
+ params_str = $.param(params);
+ url = "/get_temp_data?" + params_str;
+ console.log("url:", url);
+ $.ajax({
+ type: "GET",
+ url: url,
+ success: (function(_this) {
+ return function(progress_data) {
+ var percent_complete;
+ percent_complete = progress_data['percent_complete'];
+ console.log("in get_progress data:", progress_data);
+ $('#marker_regression_progress').css("width", percent_complete + "%");
+ if (root.start_time) {
+ if (!isNaN(percent_complete)) {
+ return update_time_remaining(percent_complete);
+ }
+ } else {
+ return root.start_time = new Date().getTime();
+ }
};
- $("#exportform > #export").click(function() {
- var form, svg_xml;
- svg_xml = getSvgXml();
- form = $("#exportform");
- form.find("#data").val(svg_xml);
- form.find("#filename").val(filename);
- return form.submit();
- });
- return $("#exportpdfform > #export_pdf").click(function() {
- var form, svg_xml;
- svg_xml = getSvgXml();
- form = $("#exportpdfform");
- form.find("#data").val(svg_xml);
- form.find("#filename").val(filename);
- return form.submit();
- });
- };
- })(this)
- });
-};
-
-showalert = function(message, alerttype) {
- return $('#alert_placeholder').append('<div id="alertdiv" class="alert ' + alerttype + '"><a class="close" data-dismiss="alert">�</a><span>' + message + '</span></div>');
-};
-
-$('#suggestive').hide();
-
-$('input[name=display_all]').change((function(_this) {
- return function() {
- console.log("check");
- if ($('input[name=display_all]:checked').val() === "False") {
- return $('#suggestive').show();
- } else {
- return $('#suggestive').hide();
- }
+ })(this)
+ });
+ return false;
};
-})(this));
-
-$("#pylmm_compute").on("click", (function(_this) {
- return function() {
- var form_data, url;
- $("#progress_bar_container").modal();
- url = "/marker_regression";
- $('input[name=method]').val("pylmm");
- $('input[name=num_perm]').val($('input[name=num_perm_pylmm]').val());
- $('input[name=manhattan_plot]').val($('input[name=manhattan_plot_pylmm]:checked').val());
- form_data = $('#trait_data_form').serialize();
- console.log("form_data is:", form_data);
- return do_ajax_post(url, form_data);
+
+ block_outliers = function() {
+ return $('.outlier').each((function(_this) {
+ return function(_index, element) {
+ return $(element).find('.trait_value_input').val('x');
+ };
+ })(this));
};
-})(this));
-
-$("#rqtl_geno_compute").on("click", (function(_this) {
- return function() {
- var form_data, url;
- $("#progress_bar_container").modal();
- url = "/marker_regression";
- $('input[name=method]').val("rqtl_geno");
- $('input[name=num_perm]').val($('input[name=num_perm_rqtl_geno]').val());
- $('input[name=manhattan_plot]').val($('input[name=manhattan_plot_rqtl]:checked').val());
- $('input[name=control_marker]').val($('input[name=control_rqtl_geno]').val());
- form_data = $('#trait_data_form').serialize();
- console.log("form_data is:", form_data);
- return do_ajax_post(url, form_data);
+
+ do_ajax_post = function(url, form_data) {
+ $.ajax({
+ type: "POST",
+ url: url,
+ data: form_data,
+ error: (function(_this) {
+ return function(xhr, ajaxOptions, thrownError) {
+ alert("Sorry, an error occurred");
+ console.log(xhr);
+ clearInterval(_this.my_timer);
+ $('#progress_bar_container').modal('hide');
+ $('#static_progress_bar_container').modal('hide');
+ return $("body").html("We got an error.");
+ };
+ })(this),
+ success: (function(_this) {
+ return function(data) {
+ clearInterval(_this.my_timer);
+ $('#progress_bar_container').modal('hide');
+ $('#static_progress_bar_container').modal('hide');
+ return open_mapping_results(data);
+ };
+ })(this)
+ });
+ console.log("settingInterval");
+ this.my_timer = setInterval(get_progress, 1000);
+ return false;
};
-})(this));
-
-$("#plink_compute").on("click", (function(_this) {
- return function() {
- var form_data, url;
- $("#static_progress_bar_container").modal();
- url = "/marker_regression";
- $('input[name=method]').val("plink");
- $('input[name=maf]').val($('input[name=maf_plink]').val());
- form_data = $('#trait_data_form').serialize();
- console.log("form_data is:", form_data);
- return do_ajax_post(url, form_data);
+
+ open_mapping_results = function(data) {
+ return $.colorbox({
+ html: data,
+ href: "#mapping_results_holder",
+ height: "90%",
+ width: "90%",
+ onComplete: (function(_this) {
+ return function() {
+ var filename, getSvgXml;
+ root.create_lod_chart();
+ filename = "lod_chart_" + js_data.this_trait;
+ getSvgXml = function() {
+ var svg;
+ svg = $("#topchart").find("svg")[0];
+ return (new XMLSerializer).serializeToString(svg);
+ };
+ $("#exportform > #export").click(function() {
+ var form, svg_xml;
+ svg_xml = getSvgXml();
+ form = $("#exportform");
+ form.find("#data").val(svg_xml);
+ form.find("#filename").val(filename);
+ return form.submit();
+ });
+ return $("#exportpdfform > #export_pdf").click(function() {
+ var form, svg_xml;
+ svg_xml = getSvgXml();
+ form = $("#exportpdfform");
+ form.find("#data").val(svg_xml);
+ form.find("#filename").val(filename);
+ return form.submit();
+ });
+ };
+ })(this)
+ });
};
-})(this));
-
-$("#gemma_compute").on("click", (function(_this) {
- return function() {
- var form_data, url;
- console.log("RUNNING GEMMA");
- $("#static_progress_bar_container").modal();
- url = "/marker_regression";
- $('input[name=method]').val("gemma");
- $('input[name=maf]').val($('input[name=maf_gemma]').val());
- form_data = $('#trait_data_form').serialize();
- console.log("form_data is:", form_data);
- return do_ajax_post(url, form_data);
+
+ outlier_text = "One or more outliers exist in this data set. Please review values before mapping. Including outliers when mapping may lead to misleading results. We recommend <A HREF=\"http://en.wikipedia.org/wiki/Winsorising\">winsorising</A> the outliers or simply deleting them.";
+
+ showalert = function(message, alerttype) {
+ return $('#alert_placeholder').append('<div id="alertdiv" class="alert ' + alerttype + '"><a class="close" data-dismiss="alert">�</a><span>' + message + '</span></div>');
};
-})(this));
-
-$("#interval_mapping_compute").on("click", (function(_this) {
- return function() {
- var form_data, url;
- showalert("One or more outliers exist in this data set. Please review values before mapping. Including outliers when mapping may lead to misleading results. We recommend <A HREF=\"http://en.wikipedia.org/wiki/Winsorising\">winsorising</A> the outliers or simply deleting them.", "alert-success");
- console.log("In interval mapping");
- $("#progress_bar_container").modal();
- url = "/interval_mapping";
- $('input[name=method]').val("reaper");
- $('input[name=manhattan_plot]').val($('input[name=manhattan_plot_reaper]:checked').val());
- $('input[name=mapping_display_all]').val($('input[name=display_all_reaper]'));
- $('input[name=suggestive]').val($('input[name=suggestive_reaper]'));
- form_data = $('#trait_data_form').serialize();
- console.log("form_data is:", form_data);
- return do_ajax_post(url, form_data);
+
+ $('#suggestive').hide();
+
+ $('input[name=display_all]').change((function(_this) {
+ return function() {
+ console.log("check");
+ if ($('input[name=display_all]:checked').val() === "False") {
+ return $('#suggestive').show();
+ } else {
+ return $('#suggestive').hide();
+ }
+ };
+ })(this));
+
+ $("#pylmm_mapping_compute").on("mouseover", (function(_this) {
+ return function() {
+ if ($(".outlier").length && $(".outlier-alert").length < 1) {
+ return showalert(outlier_text, "alert-success outlier-alert");
+ }
+ };
+ })(this));
+
+ $("#pylmm_compute").on("click", (function(_this) {
+ return function() {
+ var form_data, url;
+ $("#progress_bar_container").modal();
+ url = "/marker_regression";
+ $('input[name=method]').val("pylmm");
+ $('input[name=num_perm]').val($('input[name=num_perm_pylmm]').val());
+ $('input[name=manhattan_plot]').val($('input[name=manhattan_plot_pylmm]:checked').val());
+ form_data = $('#trait_data_form').serialize();
+ console.log("form_data is:", form_data);
+ return do_ajax_post(url, form_data);
+ };
+ })(this));
+
+ $("#rqtl_geno_compute").on("click", (function(_this) {
+ return function() {
+ var form_data, url;
+ $("#progress_bar_container").modal();
+ url = "/marker_regression";
+ $('input[name=method]').val("rqtl_geno");
+ $('input[name=num_perm]').val($('input[name=num_perm_rqtl_geno]').val());
+ $('input[name=manhattan_plot]').val($('input[name=manhattan_plot_rqtl]:checked').val());
+ $('input[name=control_marker]').val($('input[name=control_rqtl_geno]').val());
+ form_data = $('#trait_data_form').serialize();
+ console.log("form_data is:", form_data);
+ return do_ajax_post(url, form_data);
+ };
+ })(this));
+
+ $("#plink_compute").on("click", (function(_this) {
+ return function() {
+ var form_data, url;
+ $("#static_progress_bar_container").modal();
+ url = "/marker_regression";
+ $('input[name=method]').val("plink");
+ $('input[name=maf]').val($('input[name=maf_plink]').val());
+ form_data = $('#trait_data_form').serialize();
+ console.log("form_data is:", form_data);
+ return do_ajax_post(url, form_data);
+ };
+ })(this));
+
+ $("#gemma_compute").on("click", (function(_this) {
+ return function() {
+ var form_data, url;
+ console.log("RUNNING GEMMA");
+ $("#static_progress_bar_container").modal();
+ url = "/marker_regression";
+ $('input[name=method]').val("gemma");
+ $('input[name=maf]').val($('input[name=maf_gemma]').val());
+ form_data = $('#trait_data_form').serialize();
+ console.log("form_data is:", form_data);
+ return do_ajax_post(url, form_data);
+ };
+ })(this));
+
+ $("#interval_mapping_compute").on("mouseover", (function(_this) {
+ return function() {
+ if ($(".outlier").length && $(".outlier-alert").length < 1) {
+ return showalert(outlier_text, "alert-success outlier-alert");
+ }
+ };
+ })(this));
+
+ $("#interval_mapping_compute").on("click", (function(_this) {
+ return function() {
+ var form_data, url;
+ console.log("In interval mapping");
+ $("#progress_bar_container").modal();
+ url = "/interval_mapping";
+ $('input[name=method]').val("reaper");
+ $('input[name=manhattan_plot]').val($('input[name=manhattan_plot_reaper]:checked').val());
+ $('input[name=mapping_display_all]').val($('input[name=display_all_reaper]'));
+ $('input[name=suggestive]').val($('input[name=suggestive_reaper]'));
+ form_data = $('#trait_data_form').serialize();
+ console.log("form_data is:", form_data);
+ return do_ajax_post(url, form_data);
+ };
+ })(this));
+
+ composite_mapping_fields = function() {
+ return $(".composite_fields").toggle();
};
-})(this));
-composite_mapping_fields = function() {
- return $(".composite_fields").toggle();
-};
+ mapping_method_fields = function() {
+ return $(".mapping_method_fields").toggle();
+ };
-mapping_method_fields = function() {
- return $(".mapping_method_fields").toggle();
-};
+ $("#use_composite_choice").change(composite_mapping_fields);
-$("#use_composite_choice").change(composite_mapping_fields);
+ $("#mapping_method_choice").change(mapping_method_fields);
-$("#mapping_method_choice").change(mapping_method_fields);
+ toggle_enable_disable = function(elem) {
+ return $(elem).prop("disabled", !$(elem).prop("disabled"));
+ };
-toggle_enable_disable = function(elem) {
- return $(elem).prop("disabled", !$(elem).prop("disabled"));
-};
+ $("#choose_closet_control").change(function() {
+ return toggle_enable_disable("#control_locus");
+ });
-$("#choose_closet_control").change(function() {
- return toggle_enable_disable("#control_locus");
-});
+ $("#display_all_lrs").change(function() {
+ return toggle_enable_disable("#suggestive_lrs");
+ });
-$("#display_all_lrs").change(function() {
- return toggle_enable_disable("#suggestive_lrs");
-});
+}).call(this);
diff --git a/wqflask/wqflask/static/new/packages/DataTables/extensions/dataTables.colResize.js b/wqflask/wqflask/static/new/packages/DataTables/extensions/dataTables.colResize.js
index 6ef9907a..2712750a 100644
--- a/wqflask/wqflask/static/new/packages/DataTables/extensions/dataTables.colResize.js
+++ b/wqflask/wqflask/static/new/packages/DataTables/extensions/dataTables.colResize.js
@@ -1,943 +1,846 @@
-var dt;
-(function (dt) {
- var ColResize = (function () {
- function ColResize($, api, settings) {
- this.$ = $;
- this.tableSize = -1;
- this.initialized = false;
- this.dt = {};
- this.dom = {
- fixedLayout: false,
- fixedHeader: null,
- winResizeTimer: null,
- mouse: {
- startX: -1,
- startWidth: null
- },
- table: {
- prevWidth: null
- },
- origState: true,
- resize: false,
- scrollHead: null,
- scrollHeadTable: null,
- scrollFoot: null,
- scrollFootTable: null,
- scrollFootInner: null,
- scrollBody: null,
- scrollBodyTable: null,
- scrollX: false,
- scrollY: false
- };
- this.settings = this.$.extend(true, {}, dt.ColResize.defaultSettings, settings);
- this.dt.settings = api.settings()[0];
- this.dt.api = api;
- this.dt.settings.colResize = this;
- this.registerCallbacks();
- }
- ColResize.prototype.initialize = function () {
- var _this = this;
- this.$.each(this.dt.settings.aoColumns, function (i, col) {
- return _this.setupColumn(col);
- });
-
- //Initialize fixedHeader if specified
- if (this.settings.fixedHeader)
- this.setupFixedHeader();
-
- //Save scroll head and body if found
- this.dom.scrollHead = this.$('div.' + this.dt.settings.oClasses.sScrollHead, this.dt.settings.nTableWrapper);
- this.dom.scrollHeadInner = this.$('div.' + this.dt.settings.oClasses.sScrollHeadInner, this.dom.scrollHead);
- this.dom.scrollHeadTable = this.$('div.' + this.dt.settings.oClasses.sScrollHeadInner + ' > table', this.dom.scrollHead);
-
- this.dom.scrollFoot = this.$('div.' + this.dt.settings.oClasses.sScrollFoot, this.dt.settings.nTableWrapper);
- this.dom.scrollFootInner = this.$('div.' + this.dt.settings.oClasses.sScrollFootInner, this.dom.scrollFoot);
- this.dom.scrollFootTable = this.$('div.' + this.dt.settings.oClasses.sScrollFootInner + ' > table', this.dom.scrollFoot);
-
- this.dom.scrollBody = this.$('div.' + this.dt.settings.oClasses.sScrollBody, this.dt.settings.nTableWrapper);
- this.dom.scrollBodyTable = this.$('> table', this.dom.scrollBody);
- this.dt.api.on('draw.dt', this.onDraw.bind(this));
- if (this.dom.scrollFootTable) {
- this.dt.api.on('colPinFcDraw.dt', function (e, colPin, data) {
- if (data.leftClone.header)
- _this.$('tfoot', data.leftClone.header).remove();
- if (data.leftClone.footer)
- _this.$('thead', data.leftClone.footer).remove();
- if (data.rightClone.header)
- _this.$('tfoot', data.rightClone.header).remove();
- if (data.rightClone.footer)
- _this.$('thead', data.rightClone.footer).remove();
- });
- }
-
- this.dom.scrollX = this.dt.settings.oInit.sScrollX === undefined ? false : true;
- this.dom.scrollY = this.dt.settings.oInit.sScrollY === undefined ? false : true;
-
- //SaveTableWidth
- this.dt.settings.sTableWidthOrig = this.$(this.dt.settings.nTable).width();
- this.updateTableSize();
-
- this.dt.settings.oFeatures.bAutoWidthOrig = this.dt.settings.oFeatures.bAutoWidth;
- this.dt.settings.oFeatures.bAutoWidth = false;
-
- if (this.dt.settings.oInit.bStateSave && this.dt.settings.oLoadedState) {
- this.loadState(this.dt.settings.oLoadedState);
+/*! ColResize 0.0.10
+ */
+
+/**
+ * @summary ColResize
+ * @description Provide the ability to resize columns in a DataTable
+ * @version 0.0.10
+ * @file dataTables.colResize.js
+ * @author Silvacom Ltd.
+ *
+ * For details please refer to: http://www.datatables.net
+ *
+ * Special thank to everyone who has contributed to this plug in
+ * - dykstrad
+ * - tdillan (for 0.0.3 and 0.0.5 bug fixes)
+ * - kylealonius (for 0.0.8 bug fix)
+ * - the86freak (for 0.0.9 bug fix)
+ */
+
+(function (window, document, undefined) {
+
+ /* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * *
+ * DataTables plug-in API functions test
+ *
+ * This are required by ColResize in order to perform the tasks required, and also keep this
+ * code portable, to be used for other column resize projects with DataTables, if needed.
+ * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * */
+
+ var factory = function ($, DataTable) {
+ "use strict";
+
+ /**
+ * Plug-in for DataTables which will resize the columns depending on the handle clicked
+ * @method $.fn.dataTableExt.oApi.fnColResize
+ * @param object oSettings DataTables settings object - automatically added by DataTables!
+ * @param int iCol Take the column to be resized
+ * @returns void
+ */
+ $.fn.dataTableExt.oApi.fnColResize = function (oSettings, iCol) {
+ var v110 = $.fn.dataTable.Api ? true : false;
+
+ /*
+ * Update DataTables' event handlers
+ */
+
+ /* Fire an event so other plug-ins can update */
+ $(oSettings.oInstance).trigger('column-resize', [ oSettings, {
+ "iCol": iCol
+ } ]);
+ };
+
+ /**
+ * ColResize provides column resize control for DataTables
+ * @class ColResize
+ * @constructor
+ * @param {object} dt DataTables settings object
+ * @param {object} opts ColResize options
+ */
+ var ColResize = function (dt, opts) {
+ var oDTSettings;
+
+ if ($.fn.dataTable.Api) {
+ oDTSettings = new $.fn.dataTable.Api(dt).settings()[0];
+ }
+ // 1.9 compatibility
+ else if (dt.fnSettings) {
+ // DataTables object, convert to the settings object
+ oDTSettings = dt.fnSettings();
+ }
+ else if (typeof dt === 'string') {
+ // jQuery selector
+ if ($.fn.dataTable.fnIsDataTable($(dt)[0])) {
+ oDTSettings = $(dt).eq(0).dataTable().fnSettings();
+ }
}
-
- this.onDraw();
- this.dom.table.preWidth = parseFloat(this.dom.scrollBodyTable.css('width'));
-
- if (!this.dom.scrollX && this.dom.scrollY && this.settings.fixedLayout && this.dt.settings._reszEvt) {
- //We have to manually resize columns on window resize
- var eventName = 'resize.DT-' + this.dt.settings.sInstance;
- this.$(window).off(eventName);
- this.$(window).on(eventName, function () {
- _this.proportionallyColumnSizing();
- //api._fnAdjustColumnSizing(this.dt.settings);
- });
+ else if (dt.nodeName && dt.nodeName.toLowerCase() === 'table') {
+ // Table node
+ if ($.fn.dataTable.fnIsDataTable(dt.nodeName)) {
+ oDTSettings = $(dt.nodeName).dataTable().fnSettings();
+ }
}
-
- if (this.dom.scrollX || this.dom.scrollY) {
- this.dt.api.on('column-sizing.dt', this.fixFootAndHeadTables.bind(this));
- this.dt.api.on('column-visibility.dt', this.fixFootAndHeadTables.bind(this));
+ else if (dt instanceof jQuery) {
+ // jQuery object
+ if ($.fn.dataTable.fnIsDataTable(dt[0])) {
+ oDTSettings = dt.eq(0).dataTable().fnSettings();
+ }
}
+ else {
+ // DataTables settings object
+ oDTSettings = dt;
+ }
+
+ // Convert from camelCase to Hungarian, just as DataTables does
+ if ($.fn.dataTable.camelToHungarian) {
+ $.fn.dataTable.camelToHungarian(ColResize.defaults, opts || {});
+ }
+
+
+ /* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * *
+ * Public class variables
+ * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * */
+
+ /**
+ * @namespace Settings object which contains customizable information for ColResize instance
+ */
+ this.s = {
+ /**
+ * DataTables settings object
+ * @property dt
+ * @type Object
+ * @default null
+ */
+ "dt": null,
+
+ /**
+ * Initialisation object used for this instance
+ * @property init
+ * @type object
+ * @default {}
+ */
+ "init": $.extend(true, {}, ColResize.defaults, opts),
+
+ /**
+ * @namespace Information used for the mouse drag
+ */
+ "mouse": {
+ "startX": -1,
+ "startY": -1,
+ "targetIndex": -1,
+ "targetColumn": -1,
+ "neighbourIndex": -1,
+ "neighbourColumn": -1
+ },
- this.initialized = true;
- this.dt.settings.oApi._fnCallbackFire(this.dt.settings, 'colResizeInitCompleted', 'colResizeInitCompleted', [this]);
- };
-
- ColResize.prototype.setupColumn = function (col) {
- var _this = this;
- var $th = this.$(col.nTh);
- if (col.resizable === false)
- return;
-
- // listen to mousemove event for resize
- $th.on('mousemove.ColResize', function (e) {
- if (_this.dom.resize || col.resizable === false)
- return;
-
- /* Store information about the mouse position */
- var $thTarget = e.target.nodeName.toUpperCase() == 'TH' ? _this.$(e.target) : _this.$(e.target).closest('TH');
- var offset = $thTarget.offset();
- var nLength = $thTarget.innerWidth();
-
- /* are we on the col border (if so, resize col) */
- if (Math.abs(e.pageX - Math.round(offset.left + nLength)) <= 5) {
- $thTarget.css({ 'cursor': 'col-resize' });
- } else
- $thTarget.css({ 'cursor': 'pointer' });
- });
-
- //Save the original width
- col._ColResize_sWidthOrig = col.sWidthOrig;
- col.initWidth = $th.width();
- col.minWidthOrig = col.minWidth;
-
- $th.on('dblclick.ColResize', function (e) {
- _this.onDblClick(e, $th, col);
- });
-
- $th.off('mousedown.ColReorder');
-
- // listen to mousedown event
- $th.on('mousedown.ColResize', function (e) {
- return _this.onMouseDown(e, col);
- });
- };
-
- ColResize.prototype.setupFixedHeader = function () {
- var fhSettings = this.settings.fixedHeader === true ? undefined : this.settings.fixedHeader;
-
- //If left or right option was set to true disable resizing for the first or last column
- if (this.$.isPlainObject(fhSettings)) {
- var columns = this.dt.settings.aoColumns;
- if (fhSettings.left === true)
- columns[0].resizable = false;
- if (fhSettings.right === true)
- columns[columns.length - 1].resizable = false;
- }
+ /**
+ * Status variable keeping track of mouse down status
+ * @property isMousedown
+ * @type boolean
+ * @default false
+ */
+ "isMousedown": false
+ };
- this.dom.fixedHeader = new this.$.fn.dataTable.FixedHeader(this.dt.api, fhSettings);
- var origUpdateClones = this.dom.fixedHeader._fnUpdateClones;
- var that = this;
- //FixeHeader doesn't have any callback after updating the clones so we have to wrap the orig function
- this.dom.fixedHeader._fnUpdateClones = function () {
- origUpdateClones.apply(this, arguments);
- that.memorizeFixedHeaderNodes();
+ /**
+ * @namespace Common and useful DOM elements for the class instance
+ */
+ this.dom = {
+ /**
+ * Resizing element (the one the mouse is resizing)
+ * @property resize
+ * @type element
+ * @default null
+ */
+ "resizeCol": null,
+
+ /**
+ * Resizing element neighbour (the column next to the one the mouse is resizing)
+ * This is for fixed table resizing.
+ * @property resize
+ * @type element
+ * @default null
+ */
+ "resizeColNeighbour": null,
+
+ /**
+ * Array of events to be restored, used for overriding existing events from other plugins for a time.
+ * @property restoreEvents
+ * @type array
+ * @default []
+ */
+ "restoreEvents": []
};
- //As we missed the first call of _fnUpdateClones we have to call memorizeFixedHeaderNodes function manually
- this.memorizeFixedHeaderNodes();
- };
- ColResize.prototype.memorizeFixedHeaderNodes = function () {
- var _this = this;
- var fhSettings = this.dom.fixedHeader.fnGetSettings();
- var fhCache = fhSettings.aoCache;
- var i, col;
- for (i = 0; i < fhCache.length; i++) {
- var type = fhCache[i].sType;
- var propName;
- var selector;
- switch (type) {
- case 'fixedHeader':
- propName = 'fhTh';
- selector = 'thead>tr>th';
- this.dt.settings.fhTHead = fhCache[i].nNode;
- break;
- case 'fixedFooter':
- propName = 'fhTf';
- selector = 'thead>tr>th';
-
- //prepend a cloned thead to the floating footer table so that resizing will work correctly
- var tfoot = this.$(fhCache[i].nNode);
- var thead = this.$(this.dt.settings.nTHead).clone().css({ height: 0, visibility: 'hidden' });
- this.$('tr', thead).css('height', 0);
- this.$('tr>th', thead).css({
- 'height': 0,
- 'padding-bottom': 0,
- 'padding-top': 0,
- 'border-bottom-width': 0,
- 'border-top-width': 0,
- 'line-height': 0
- });
- tfoot.prepend(thead);
- this.$('tfoot>tr>th', tfoot).css('width', '');
- this.dt.settings.fhTFoot = fhCache[i].nNode;
- break;
- default:
- continue;
+ /* Constructor logic */
+ this.s.dt = oDTSettings.oInstance.fnSettings();
+ this.s.dt._colResize = this;
+ this._fnConstruct();
+
+ /* Add destroy callback */
+ oDTSettings.oApi._fnCallbackReg(oDTSettings, 'aoDestroyCallback', $.proxy(this._fnDestroy, this), 'ColResize');
+
+ return this;
+ };
+
+
+ ColResize.prototype = {
+ /* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * *
+ * Public methods
+ * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * */
+
+ /**
+ * Reset the column widths to the original widths that was detected on
+ * start up.
+ * @return {this} Returns `this` for chaining.
+ *
+ * @example
+ * // DataTables initialisation with ColResize
+ * var table = $('#example').dataTable( {
+ * "sDom": 'Zlfrtip'
+ * } );
+ *
+ * // Add click event to a button to reset the ordering
+ * $('#resetOrdering').click( function (e) {
+ * e.preventDefault();
+ * $.fn.dataTable.ColResize( table ).fnReset();
+ * } );
+ */
+ "fnReset": function () {
+ var a = [];
+ for (var i = 0, iLen = this.s.dt.aoColumns.length; i < iLen; i++) {
+ this.s.dt.aoColumns[i].width = this.s.dt.aoColumns[i]._ColResize_iOrigWidth;
}
- this.$(selector, fhCache[i].nNode).each(function (j, th) {
- col = _this.getVisibleColumn(j);
- col[propName] = th;
- });
- }
- };
+ this.s.dt.adjust().draw();
- //zero based index
- ColResize.prototype.getVisibleColumn = function (idx) {
- var columns = this.dt.settings.aoColumns;
- var currVisColIdx = -1;
- for (var i = 0; i < columns.length; i++) {
- if (!columns[i].bVisible)
- continue;
- currVisColIdx++;
- if (currVisColIdx == idx)
- return columns[i];
- }
- return null;
- };
-
- ColResize.prototype.updateTableSize = function () {
- if (this.dom.scrollX && this.dom.scrollHeadTable.length)
- this.tableSize = this.dom.scrollHeadTable.width();
- else
- this.tableSize = -1;
- };
+ return this;
+ },
- ColResize.prototype.proportionallyColumnSizing = function () {
- var _this = this;
- var prevWidths = [], newWidths = [], prevWidth, newWidth, newTableWidth, prevTableWidth, moveLength, multiplier, cWidth, i, j, delay = 500, prevTotalColWidths = 0, currTotalColWidths, columnRestWidths = [], columns = this.dt.settings.aoColumns, bodyTableColumns = this.$('thead th', this.dom.scrollBodyTable), headTableColumns = this.$('thead th', this.dom.scrollHeadTable), footTableColumns = this.dom.scrollFootTable.length ? this.$('thead th', this.dom.scrollFootTable) : [], visColumns = [];
- for (i = 0; i < columns.length; i++) {
- if (!columns[i].bVisible)
- continue;
- visColumns.push(columns[i]);
- columnRestWidths.push(0); //set default value
- }
+ /* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * *
+ * Private methods (they are of course public in JS, but recommended as private)
+ * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * */
- for (i = 0; i < bodyTableColumns.length; i++) {
- cWidth = parseFloat(bodyTableColumns[i].style.width);
- prevTotalColWidths += cWidth;
- prevWidths.push(cWidth);
- }
-
- for (i = 0; i < bodyTableColumns.length; i++) {
- bodyTableColumns[i].style.width = '';
- }
+ /**
+ * Constructor logic
+ * @method _fnConstruct
+ * @returns void
+ * @private
+ */
+ "_fnConstruct": function () {
+ var that = this;
+ var iLen = that.s.dt.aoColumns.length;
+ var i;
- //Get the new table width calculated by the browser
- newTableWidth = parseFloat(this.dom.scrollBodyTable.css('width'));
+ that._fnSetupMouseListeners();
- //Get the old table width
- prevTableWidth = this.dom.table.preWidth;
- moveLength = newTableWidth - prevTableWidth;
- if (moveLength == 0) {
- for (i = 0; i < bodyTableColumns.length; i++) {
- bodyTableColumns[i].style.width = prevWidths[i] + 'px';
+ /* Add event handlers for the resize handles */
+ for (i = 0; i < iLen; i++) {
+ /* Mark the original column width for later reference */
+ this.s.dt.aoColumns[i]._ColResize_iOrigWidth = this.s.dt.aoColumns[i].width;
}
- return;
- }
- //var tot = 0;
- currTotalColWidths = prevTotalColWidths;
- for (i = 0; i < visColumns.length; i++) {
- //For each column calculate the new width
- prevWidth = prevWidths[i];
- multiplier = (+(prevWidth / prevTotalColWidths).toFixed(2));
-
- //tot += multiplier;
- newWidth = prevWidth + (moveLength * multiplier) + columnRestWidths[i];
- currTotalColWidths -= prevWidth;
-
- //Check whether the column can be resized to the new calculated value
- //if not, set it to the min or max width depends on the moveLength value
- if (!this.canResizeColumn(visColumns[i], newWidth)) {
- cWidth = moveLength > 0 ? this.getColumnMaxWidth(visColumns[i]) : this.getColumnMinWidth(visColumns[i]);
- var rest = newWidth - cWidth;
- newWidth = cWidth;
-
- for (j = (i + 1); j < visColumns.length; j++) {
- columnRestWidths[j] += rest * (+(visColumns[j] / currTotalColWidths).toFixed(2));
+ this._fnSetColumnIndexes();
+
+ /* State saving */
+ this.s.dt.oApi._fnCallbackReg( this.s.dt, 'aoStateSaveParams', function (oS, oData) {
+ that._fnStateSave.call(that, oData);
+ }, "ColResize_State" );
+
+ // State loading
+ this._fnStateLoad();
+ },
+
+ /**
+ * @method _fnStateSave
+ * @param object oState DataTables state
+ * @private
+ */
+ "_fnStateSave": function (oState) {
+ this.s.dt.aoColumns.forEach(function(col, index) {
+ oState.columns[index].width = col.sWidthOrig;
+ });
+ },
+
+ /**
+ * If state has been loaded, apply the saved widths to the columns
+ * @method _fnStateLoad
+ * @private
+ */
+ "_fnStateLoad": function() {
+ var that = this,
+ loadedState = this.s.dt.oLoadedState;
+ if (loadedState && loadedState.columns) {
+ var colStates = loadedState.columns,
+ currCols = this.s.dt.aoColumns;
+ // Only apply the saved widths if the number of columns is the same.
+ // Otherwise, we don't know if we're applying the width to the correct column.
+ if (colStates.length > 0 && colStates.length === currCols.length) {
+ colStates.forEach(function(state, index) {
+ var col = that.s.dt.aoColumns[index];
+ if (state.width) {
+ col.sWidthOrig = col.sWidth = state.width;
+ }
+ });
}
}
- newWidths.push(newWidth);
- }
-
- //Apply the calculated column widths to the headers cells
- var tablesWidth = this.dom.scrollBodyTable.outerWidth() + 'px';
- for (i = 0; i < headTableColumns.length; i++) {
- headTableColumns[i].style.width = newWidths[i] + 'px';
- }
- this.dom.scrollHeadTable.css('width', tablesWidth);
- this.dom.scrollHeadInner.css('width', tablesWidth);
-
- for (i = 0; i < bodyTableColumns.length; i++) {
- bodyTableColumns[i].style.width = newWidths[i] + 'px';
- }
-
- if (this.dom.scrollFootTable.length) {
- for (i = 0; i < footTableColumns.length; i++) {
- footTableColumns[i].style.width = newWidths[i] + 'px';
+ },
+
+ /**
+ * Remove events of type from obj add it to restoreEvents array to be restored at a later time
+ * @param until string flag when to restore the event
+ * @param obj Object to remove events from
+ * @param type type of event to remove
+ * @param namespace namespace of the event being removed
+ */
+ "_fnDelayEvents": function (until, obj, type, namespace) {
+ var that = this;
+ //Get the events for the object
+ var events = $._data($(obj).get(0), 'events');
+ $.each(events, function (i, o) {
+ //If the event type matches
+ if (i == type) {
+ //Loop through the possible many events with that type
+ $.each(o, function (k, v) {
+ //Somehow it is possible for the event to be undefined make sure it is defined first
+ if (v) {
+ if (namespace) {
+ //Add the event to the array of events to be restored later
+ that.dom.restoreEvents.push({"until": until, "obj": obj, "type": v.type, "namespace": v.namespace, "handler": v.handler});
+ //If the namespace matches
+ if (v.namespace == namespace) {
+ //Turn off/unbind the event
+ $(obj).off(type + "." + namespace);
+ }
+ } else {
+ //Add the event to the array of events to be restored later
+ that.dom.restoreEvents.push({"until": until, "obj": obj, "type": v.type, "namespace": null, "handler": v.handler});
+ //Turn off/unbind the event
+ $(obj).off(type);
+ }
+ }
+ });
+ }
+ });
+ },
+
+ /**
+ * Loop through restoreEvents array and restore the events on the elements provided
+ */
+ "_fnRestoreEvents": function (until) {
+ var that = this;
+ //Loop through the events to be restored
+ var i;
+ for (i = that.dom.restoreEvents.length; i--;) {
+ if (that.dom.restoreEvents[i].until == undefined || that.dom.restoreEvents[i].until == null || that.dom.restoreEvents[i].until == until) {
+ if (that.dom.restoreEvents[i].namespace) {
+ //Turn on the event for the object provided
+ $(that.dom.restoreEvents[i].obj).off(that.dom.restoreEvents[i].type + "." + that.dom.restoreEvents[i].namespace).on(that.dom.restoreEvents[i].type + "." + that.dom.restoreEvents[i].namespace, that.dom.restoreEvents[i].handler);
+ that.dom.restoreEvents.splice(i, 1);
+ } else {
+ //Turn on the event for the object provided
+ $(that.dom.restoreEvents[i].obj).off(that.dom.restoreEvents[i].type).on(that.dom.restoreEvents[i].type, that.dom.restoreEvents[i].handler);
+ that.dom.restoreEvents.splice(i, 1);
+ }
+ }
}
- this.dom.scrollFootTable[0].style.width = tablesWidth;
- this.dom.scrollFootInner[0].style.width = tablesWidth;
- }
+ },
- //console.log('moveLength: ' + moveLength + ' multiplier: ' + tot);
- //console.log(newWidths);
- this.dom.table.preWidth = newTableWidth;
-
- //Call afterResizing function after the window stops resizing
- if (this.dom.winResizeTimer)
- clearTimeout(this.dom.winResizeTimer);
- this.dom.winResizeTimer = setTimeout(function () {
- _this.afterResizing();
- _this.dom.winResizeTimer = null;
- }, delay);
- };
+ /* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * *
+ * Mouse drop and drag
+ */
- ColResize.prototype.getColumnIndex = function (col) {
- //Get the current column position
- var colIdx = -1;
- for (var i = 0; i < this.dt.settings.aoColumns.length; i++) {
- if (this.dt.settings.aoColumns[i] === col) {
- colIdx = i;
- break;
+ "_fnSetupMouseListeners":function() {
+ var that = this;
+ $(that.s.dt.nTableWrapper).off("mouseenter.ColResize").on("mouseenter.ColResize","th",function(e) {
+ e.preventDefault();
+ that._fnMouseEnter.call(that, e, this);
+ });
+ $(that.s.dt.nTableWrapper).off("mouseleave.ColResize").on("mouseleave.ColResize","th",function(e) {
+ e.preventDefault();
+ that._fnMouseLeave.call(that, e, this);
+ });
+ },
+
+ /**
+ * Add mouse listeners to the resize handle on TH element
+ * @method _fnMouseListener
+ * @param i Column index
+ * @param nTh TH resize handle element clicked on
+ * @returns void
+ * @private
+ */
+ "_fnMouseListener": function (i, nTh) {
+ var that = this;
+ $(nTh).off('mouseenter.ColResize').on('mouseenter.ColResize', function (e) {
+ e.preventDefault();
+ that._fnMouseEnter.call(that, e, nTh);
+ });
+ $(nTh).off('mouseleave.ColResize').on('mouseleave.ColResize', function (e) {
+ e.preventDefault();
+ that._fnMouseLeave.call(that, e, nTh);
+ });
+ },
+
+ /**
+ *
+ * @param e Mouse event
+ * @param nTh TH element that the mouse is over
+ */
+ "_fnMouseEnter": function (e, nTh) {
+ var that = this;
+ if(!that.s.isMousedown) {
+ //Once the mouse has entered the cell add mouse move event to see if the mouse is over resize handle
+ $(nTh).off('mousemove.ColResizeHandle').on('mousemove.ColResizeHandle', function (e) {
+ e.preventDefault();
+ that._fnResizeHandleCheck.call(that, e, nTh);
+ });
}
- }
- return colIdx;
- };
+ },
+
+ /**
+ * Clear mouse events when the mouse has left the th
+ * @param e Mouse event
+ * @param nTh TH element that the mouse has just left
+ */
+ "_fnMouseLeave": function (e, nTh) {
+ //Once the mouse has left the TH make suure to remove the mouse move listener
+ $(nTh).off('mousemove.ColResizeHandle');
+ },
+
+ /**
+ * Mouse down on a TH element in the table header
+ * @method _fnMouseDown
+ * @param event e Mouse event
+ * @param element nTh TH element to be resized
+ * @returns void
+ * @private
+ */
+ "_fnMouseDown": function (e, nTh) {
+ var that = this;
+
+ that.s.isMousedown = true;
- ColResize.prototype.getColumnEvent = function (th, type, ns) {
- var event;
- var thEvents = this.$._data(th, "events");
- this.$.each(thEvents[type] || [], function (idx, handler) {
- if (handler.namespace === ns)
- event = handler;
- });
- return event;
- };
-
- ColResize.prototype.loadState = function (data) {
- var _this = this;
- var i, col;
-
- var onInit = function () {
- if (_this.settings.fixedLayout) {
- _this.setTablesLayout('fixed');
+ /* Store information about the mouse position */
+ var target = $(e.target).closest('th, td');
+ var offset = target.offset();
+
+ /* Store information about the mouse position for resize calculations in mouse move function */
+ this.s.mouse.startX = e.pageX;
+ this.s.mouse.startY = e.pageY;
+
+ //Store the indexes of the columns the mouse is down on
+ var idx = that.dom.resizeCol[0].cellIndex;
+
+ // the last column has no 'right-side' neighbour
+ // with fixed this can make the table smaller
+ if (that.dom.resizeColNeighbour[0] === undefined){
+ var idxNeighbour = 0;
} else {
- _this.setTablesLayout('auto');
+ var idxNeighbour = that.dom.resizeColNeighbour[0].cellIndex;
}
- if (!data.colResize) {
- if (_this.dt.settings.oFeatures.bAutoWidthOrig)
- _this.dt.settings.oFeatures.bAutoWidth = true;
- else if (_this.dt.settings.sTableWidthOrig)
- _this.$(_this.dt.settings.nTable).width(_this.dt.settings.sTableWidthOrig);
-
- for (i = 0; i < _this.dt.settings.aoColumns.length; i++) {
- col = _this.dt.settings.aoColumns[i];
- if (col._ColResize_sWidthOrig) {
- col.sWidthOrig = col._ColResize_sWidthOrig;
- }
- }
- _this.dom.origState = true;
- } else {
- var columns = data.colResize.columns || [];
- var wMap = {};
+
+
- if (_this.dt.settings.oFeatures.bAutoWidth) {
- _this.dt.settings.oFeatures.bAutoWidth = false;
- }
+ if (idx === undefined) {
+ return;
+ }
- if (_this.dom.scrollX && data.colResize.tableSize > 0) {
- _this.dom.scrollHeadTable.width(data.colResize.tableSize);
- _this.dom.scrollHeadInner.width(data.colResize.tableSize);
- _this.dom.scrollBodyTable.width(data.colResize.tableSize);
- _this.dom.scrollFootTable.width(data.colResize.tableSize);
+ this.s.mouse.targetIndex = idx;
+ this.s.mouse.targetColumn = this.s.dt.aoColumns[ idx ];
+
+ this.s.mouse.neighbourIndex = idxNeighbour;
+ this.s.mouse.neighbourColumn = this.s.dt.aoColumns[ idxNeighbour ];
+
+ /* Add event handlers to the document */
+ $(document)
+ .off('mousemove.ColResize').on('mousemove.ColResize', function (e) {
+ that._fnMouseMove.call(that, e);
+ })
+ .off('mouseup.ColResize').on('mouseup.ColResize', function (e) {
+ that._fnMouseUp.call(that, e);
+ });
+ },
+
+ /**
+ * Deal with a mouse move event while dragging to resize a column
+ * @method _fnMouseMove
+ * @param e Mouse event
+ * @returns void
+ * @private
+ */
+ "_fnMouseMove": function (e) {
+ var that = this;
+
+ var offset = $(that.s.mouse.targetColumn.nTh).offset();
+ var relativeX = (e.pageX - offset.left);
+ var distFromLeft = relativeX;
+ var distFromRight = $(that.s.mouse.targetColumn.nTh).outerWidth() - relativeX - 1;
+
+ //Change in mouse x position
+ var dx = e.pageX - that.s.mouse.startX;
+ //Get the minimum width of the column (default minimum 10px)
+ var minColumnWidth = Math.max(parseInt($(that.s.mouse.targetColumn.nTh).css('min-width')), 10);
+ //Store the previous width of the column
+ var prevWidth = $(that.s.mouse.targetColumn.nTh).width();
+ //As long as the cursor is past the handle, resize the columns
+ if ((dx > 0 && distFromRight <= 0) || (dx < 0 && distFromRight >= 0)) {
+ if (!that.s.init.tableWidthFixed) {
+ //As long as the width is larger than the minimum
+ var newColWidth = Math.max(minColumnWidth, prevWidth + dx);
+ //Get the width difference (take into account the columns minimum width)
+ var widthDiff = newColWidth - prevWidth;
+ var colResizeIdx = parseInt(that.dom.resizeCol.attr("data-column-index"));
+ //Set datatable column widths
+ that.s.mouse.targetColumn.sWidthOrig = that.s.mouse.targetColumn.sWidth = that.s.mouse.targetColumn.width = newColWidth + "px";
+ var domCols = $(that.s.dt.nTableWrapper).find("th[data-column-index='"+colResizeIdx+"']");
+ //For each table expand the width by the same amount as the column
+ //This accounts for other datatable plugins like FixedColumns
+ domCols.parents("table").each(function() {
+ if(!$(this).parent().hasClass("DTFC_LeftBodyLiner")) {
+ var newWidth = $(this).width() + widthDiff;
+ $(this).width(newWidth);
+ } else {
+ var newWidth =$(that.s.dt.nTableWrapper).find(".DTFC_LeftHeadWrapper").children("table").width();
+ $(this).parents(".DTFC_LeftWrapper").width(newWidth);
+ $(this).parent().width(newWidth+15);
+ $(this).width(newWidth);
+ }
+ });
+ //Apply the new width to the columns after the table has been resized
+ domCols.width(that.s.mouse.targetColumn.width);
+ } else {
+ //A neighbour column must exist in order to resize a column in a table with a fixed width
+ if (that.s.mouse.neighbourColumn) {
+ //Get the minimum width of the neighbor column (default minimum 10px)
+ var minColumnNeighbourWidth = Math.max(parseInt($(that.s.mouse.neighbourColumn.nTh).css('min-width')), 10);
+ //Store the previous width of the neighbour column
+ var prevNeighbourWidth = $(that.s.mouse.neighbourColumn.nTh).width();
+ //As long as the width is larger than the minimum
+ var newColWidth = Math.max(minColumnWidth, prevWidth + dx);
+ var newColNeighbourWidth = Math.max(minColumnNeighbourWidth, prevNeighbourWidth - dx);
+ //Get the width difference (take into account the columns minimum width)
+ var widthDiff = newColWidth - prevWidth;
+ var widthDiffNeighbour = newColNeighbourWidth - prevNeighbourWidth;
+ //Get the column index for the column being changed
+ var colResizeIdx = parseInt(that.dom.resizeCol.attr("data-column-index"));
+ var neighbourColResizeIdx = parseInt(that.dom.resizeColNeighbour.attr("data-column-index"));
+ //Set datatable column widths
+ that.s.mouse.neighbourColumn.sWidthOrig = that.s.mouse.neighbourColumn.sWidth = that.s.mouse.neighbourColumn.width = newColNeighbourWidth + "px";
+ that.s.mouse.targetColumn.sWidthOrig = that.s.mouse.targetColumn.sWidth = that.s.mouse.targetColumn.width = newColWidth + "px";
+ //Get list of columns based on column index in all affected tables tables. This accounts for other plugins like FixedColumns
+ var domNeighbourCols = $(that.s.dt.nTableWrapper).find("th[data-column-index='" + neighbourColResizeIdx + "']");
+ var domCols = $(that.s.dt.nTableWrapper).find("th[data-column-index='" + colResizeIdx + "']");
+ //If dx if positive (the width is getting larger) shrink the neighbour columns first
+ if(dx>0) {
+ domNeighbourCols.width(that.s.mouse.neighbourColumn.width);
+ domCols.width(that.s.mouse.targetColumn.width);
+ } else {
+ //Apply the new width to the columns then to the neighbour columns
+ domCols.width(that.s.mouse.targetColumn.width);
+ domNeighbourCols.width(that.s.mouse.neighbourColumn.width);
+ }
+ }
}
+ }
+ that.s.mouse.startX = e.pageX;
+ },
+
+ /**
+ * Check to see if the mouse is over the resize handle area
+ * @param e
+ * @param nTh
+ */
+ "_fnResizeHandleCheck": function (e, nTh) {
+ var that = this;
+
+ var offset = $(nTh).offset();
+ var relativeX = (e.pageX - offset.left);
+ var relativeY = (e.pageY - offset.top);
+ var distFromLeft = relativeX;
+ var distFromRight = $(nTh).outerWidth() - relativeX - 1;
+
+ var handleBuffer = this.s.init.handleWidth / 2;
+ var leftHandleOn = distFromLeft < handleBuffer;
+ var rightHandleOn = distFromRight < handleBuffer;
+
+ //If this is the first table cell
+ if ($(nTh).prev("th").length == 0) {
+ if(this.s.init.rtl)
+ rightHandleOn = false;
+ else
+ leftHandleOn = false;
+ }
+ //If this is the last cell and the table is fixed width don't let them expand the last cell directly
+ if ($(nTh).next("th").length == 0 && this.s.init.tableWidthFixed) {
+ if(this.s.init.rtl)
+ leftHandleOn = false;
+ else
+ rightHandleOn = false;
+ }
- for (i = 0; i < columns.length; i++) {
- wMap[i] = columns[i];
+ var resizeAvailable = leftHandleOn||rightHandleOn;
+
+ //If table is in right to left mode flip which TH is being resized
+ if (that.s.init.rtl) {
+ //Handle is to the left
+ if (leftHandleOn) {
+ that.dom.resizeCol = $(nTh);
+ that.dom.resizeColNeighbour = $(nTh).next();
+ } else if (rightHandleOn) {
+ that.dom.resizeCol = $(nTh).prev();
+ that.dom.resizeColNeighbour = $(nTh);
}
- for (i = 0; i < _this.dt.settings.aoColumns.length; i++) {
- col = _this.dt.settings.aoColumns[i];
- var idx = col._ColReorder_iOrigCol != null ? col._ColReorder_iOrigCol : i;
- col.sWidth = wMap[idx];
- col.sWidthOrig = wMap[idx];
- col.nTh.style.width = columns[i];
-
- //Check for FixedHeader
- if (col.fhTh)
- col.fhTh.style.width = columns[i];
- if (col.fhTf)
- col.fhTf.style.width = columns[i];
+ } else {
+ //Handle is to the right
+ if (rightHandleOn) {
+ that.dom.resizeCol = $(nTh);
+ that.dom.resizeColNeighbour = $(nTh).next();
+ } else if (leftHandleOn) {
+ that.dom.resizeCol = $(nTh).prev();
+ that.dom.resizeColNeighbour = $(nTh);
}
- _this.dom.origState = false;
}
- _this.dt.api.columns.adjust();
- if (_this.dom.scrollX || _this.dom.scrollY)
- _this.dt.api.draw(false);
- };
-
- if (this.initialized) {
- onInit();
- return;
- }
- this.dt.settings.oApi._fnCallbackReg(this.dt.settings, 'colResizeInitCompleted', function () {
- onInit();
- }, "ColResize_Init");
- };
-
- ColResize.prototype.saveState = function (data) {
- if (!this.dt.settings._bInitComplete) {
- var oData = this.dt.settings.fnStateLoadCallback.call(this.dt.settings.oInstance, this.dt.settings);
- if (oData && oData.colResize)
- data.colResize = oData.colResize;
- return;
- }
- this.updateTableSize();
- data.colResize = {
- columns: [],
- tableSize: this.tableSize
- };
-
- data.colResize.columns.length = this.dt.settings.aoColumns.length;
- for (var i = 0; i < this.dt.settings.aoColumns.length; i++) {
- var col = this.dt.settings.aoColumns[i];
- var idx = col._ColReorder_iOrigCol != null ? col._ColReorder_iOrigCol : i;
- data.colResize.columns[idx] = col.sWidth;
- }
- };
-
- ColResize.prototype.registerCallbacks = function () {
- var _this = this;
- /* State saving */
- this.dt.settings.oApi._fnCallbackReg(this.dt.settings, 'aoStateSaveParams', function (oS, oData) {
- _this.saveState(oData);
- }, "ColResize_StateSave");
-
- /* State loading */
- this.dt.settings.oApi._fnCallbackReg(this.dt.settings, 'aoStateLoaded', function (oS, oData) {
- _this.loadState(oData);
- }, "ColResize_StateLoad");
-
- if (this.$.fn.DataTable.models.oSettings.remoteStateInitCompleted !== undefined) {
- //Integrate with remote state
- this.dt.settings.oApi._fnCallbackReg(this.dt.settings, 'remoteStateLoadedParams', function (s, data) {
- _this.loadState(data);
- }, "ColResize_StateLoad");
- this.dt.settings.oApi._fnCallbackReg(this.dt.settings, 'remoteStateSaveParams', function (s, data) {
- _this.saveState(data);
- }, "ColResize_StateSave");
- }
- };
-
- ColResize.prototype.setTablesLayout = function (value) {
- if (this.dom.scrollX || this.dom.scrollY) {
- this.dom.scrollHeadTable.css('table-layout', value);
- this.dom.scrollBodyTable.css('table-layout', value);
- this.dom.scrollFootTable.css('table-layout', value);
- } else {
- this.$(this.dt.settings.nTable).css('table-layout', value);
- }
- this.dom.fixedLayout = value == 'fixed';
- };
-
- //only when scrollX or scrollY are enabled
- ColResize.prototype.fixFootAndHeadTables = function (e) {
- var _this = this;
- if (e != null && e.target !== this.dt.settings.nTable)
- return;
-
- if (this.dom.scrollFootTable.length) {
- this.$('thead', this.dom.scrollFootTable).remove();
- this.dom.scrollFootTable.prepend(this.$('thead', this.dom.scrollBodyTable).clone());
- }
- this.$('tfoot', this.dom.scrollHeadTable).remove();
- this.dom.scrollHeadTable.append(this.$('tfoot', this.dom.scrollBodyTable).clone());
- var removeFooterWidth = function (table) {
- _this.$('tfoot>tr>th', table).each(function (i, th) {
- _this.$(th).css('width', '');
- });
- };
-
- //Remove all tfoot headers widths
- removeFooterWidth(this.dom.scrollFootTable);
- removeFooterWidth(this.dom.scrollBodyTable);
- removeFooterWidth(this.dom.scrollHeadTable);
- };
-
- ColResize.prototype.onDraw = function (e) {
- if (e != null && e.target !== this.dt.settings.nTable)
- return;
- if (this.dom.scrollX || this.dom.scrollY) {
- this.fixFootAndHeadTables();
-
- //Fix the header table padding
- if (this.dt.settings._bInitComplete) {
- var borderWidth = this.dom.scrollHeadTable.outerWidth() - this.dom.scrollHeadTable.innerWidth();
- var paddingType = this.dt.settings.oBrowser.bScrollbarLeft ? 'padding-left' : 'padding-right';
- var paddingVal = parseFloat(this.dom.scrollHeadInner.css(paddingType));
- this.dom.scrollHeadInner.css(paddingType, (paddingVal + borderWidth) + 'px');
- }
- }
-
- var autoWidthTypes = [];
- if (this.settings.dblClick == 'autoMinFit' || !this.settings.fixedLayout)
- autoWidthTypes.push('autoMinWidth');
- if (this.settings.dblClick == 'autoFit')
- autoWidthTypes.push('autoWidth');
-
- //Call this only once so that the table will be cloned only one time
- if (autoWidthTypes.length)
- this.updateColumnsAutoWidth(autoWidthTypes);
-
- if (!this.settings.fixedLayout) {
- var columns = this.dt.settings.aoColumns;
- var i;
- for (i = 0; i < columns.length; i++) {
- if (!columns[i].bVisible)
- continue;
- columns[i].minWidth = Math.max((columns[i].minWidthOrig || 0), columns[i].autoMinWidth);
-
- //We have to resize if the current column width if is less that the column minWidth
- if (this.$(columns[i].nTh).width() < columns[i].minWidth)
- this.resize(columns[i], columns[i].minWidth);
+ //If table width is fixed make sure both columns are resizable else just check the one.
+ if(this.s.init.tableWidthFixed)
+ resizeAvailable &= this.s.init.exclude.indexOf(parseInt($(that.dom.resizeCol).attr("data-column-index"))) == -1 && this.s.init.exclude.indexOf(parseInt($(that.dom.resizeColNeighbour).attr("data-column-index"))) == -1;
+ else
+ resizeAvailable &= this.s.init.exclude.indexOf(parseInt($(that.dom.resizeCol).attr("data-column-index"))) == -1;
+
+ $(nTh).off('mousedown.ColResize');
+ if (resizeAvailable) {
+ $(nTh).css("cursor", "ew-resize");
+
+ //Delay other mousedown events from the Reorder plugin
+ that._fnDelayEvents(null, nTh, "mousedown", "ColReorder");
+ that._fnDelayEvents("click", nTh, "click", "DT");
+
+ $(nTh).off('mousedown.ColResize').on('mousedown.ColResize', function (e) {
+ e.preventDefault();
+ that._fnMouseDown.call(that, e, nTh);
+ })
+ .off('click.ColResize').on('click.ColResize', function (e) {
+ that._fnClick.call(that, e);
+ });
+ } else {
+ $(nTh).css("cursor", "pointer");
+ $(nTh).off('mousedown.ColResize click.ColResize');
+ //Restore any events that were removed
+ that._fnRestoreEvents();
+ //This is to restore column sorting on click functionality
+ if (!that.s.isMousedown)
+ //Restore click event if mouse is not down
+ this._fnRestoreEvents("click");
}
- } else {
- if (!this.dom.fixedLayout) {
- this.setTablesLayout('fixed');
- this.afterResizing();
+ },
+
+ "_fnClick": function (e) {
+ var that = this;
+ that.s.isMousedown = false;
+ e.stopImmediatePropagation();
+ },
+
+ /**
+ * Finish off the mouse drag
+ * @method _fnMouseUp
+ * @param e Mouse event
+ * @returns void
+ * @private
+ */
+ "_fnMouseUp": function (e) {
+ var that = this;
+ that.s.isMousedown = false;
+
+ //Fix width of column to be the size the dom is limited to (for when user sets min-width on a column)
+ that.s.mouse.targetColumn.width = that.dom.resizeCol.width();
+
+ $(document).off('mousemove.ColResize mouseup.ColResize');
+ this.s.dt.oInstance.fnAdjustColumnSizing();
+ //Table width fix, prevents extra gaps between tables
+ var LeftWrapper = $(that.s.dt.nTableWrapper).find(".DTFC_LeftWrapper");
+ var DTFC_LeftWidth = LeftWrapper.width();
+ LeftWrapper.children(".DTFC_LeftHeadWrapper").children("table").width(DTFC_LeftWidth);
+
+ if (that.s.init.resizeCallback) {
+ that.s.init.resizeCallback.call(that, that.s.mouse.targetColumn);
}
- }
- };
-
- ColResize.prototype.getTableAutoColWidths = function (table, types) {
- var widths = {}, i, colIdx;
- var $table = this.$(table);
- for (i = 0; i < types.length; i++) {
- widths[types[i]] = [];
- }
- if (!types.length || !$table.length)
- return widths;
-
- var clnTable = $table.clone().removeAttr('id').css('table-layout', 'auto');
-
- // Remove any assigned widths from the footer (from scrolling)
- clnTable.find('thead th, tfoot th, tfoot td').css('width', '');
- var container = this.$('<div />').css({
- 'position': 'absolute',
- 'width': '9999px',
- 'height': '9999px'
- });
- container.append(clnTable);
- this.$(this.dt.settings.nTableWrapper).append(container);
-
- var headerCols = this.$('thead>tr>th', clnTable);
-
- for (i = 0; i < types.length; i++) {
- var type = types[i];
- var fn = '';
- switch (type) {
- case 'autoMinWidth':
- clnTable.css('width', '1px');
- fn = 'width';
+ },
+
+ /**
+ * Clean up ColResize memory references and event handlers
+ * @method _fnDestroy
+ * @returns void
+ * @private
+ */
+ "_fnDestroy": function () {
+ var i, iLen;
+
+ for (i = 0, iLen = this.s.dt.aoDrawCallback.length; i < iLen; i++) {
+ if (this.s.dt.aoDrawCallback[i].sName === 'ColResize_Pre') {
+ this.s.dt.aoDrawCallback.splice(i, 1);
break;
- case 'autoWidth':
- clnTable.css('width', 'auto');
- fn = 'outerWidth';
- break;
- default:
- throw 'Invalid widthType ' + type;
- }
- for (colIdx = 0; colIdx < headerCols.length; colIdx++) {
- widths[type].push(this.$(headerCols[colIdx])[fn]());
- }
- }
-
- container.remove();
- return widths;
- };
-
- ColResize.prototype.updateColumnsAutoWidth = function (types) {
- var columns = this.dt.settings.aoColumns;
- var i, j, colLen, type, visColIdx = 0;
- var widths = {};
- if (this.dom.scrollX || this.dom.scrollY) {
- var headWidths = this.getTableAutoColWidths(this.dom.scrollHeadTable, types);
- var bodyWidths = this.getTableAutoColWidths(this.dom.scrollBodyTable, types);
- var footWidths = this.getTableAutoColWidths(this.dom.scrollFootTable, types);
-
- for (i = 0; i < types.length; i++) {
- type = types[i];
- widths[type] = [];
- footWidths[type].length = headWidths[type].length;
- colLen = headWidths[type].length;
- for (j = 0; j < colLen; j++) {
- widths[type].push(Math.max(headWidths[type][j], bodyWidths[type][j], (footWidths[type][j] || 0)));
}
}
- } else {
- widths = this.getTableAutoColWidths(this.dt.settings.nTable, types);
- }
-
- for (i = 0; i < columns.length; i++) {
- if (!columns[i].bVisible)
- continue;
- for (j = 0; j < types.length; j++) {
- type = types[j];
- columns[i][type] = widths[type][visColIdx];
- }
- visColIdx++;
- }
- };
- ColResize.prototype.overrideClickHander = function (col, $th) {
- var dtClickEvent = this.getColumnEvent($th.get(0), 'click', 'DT');
+ $(this.s.dt.nTHead).find('*').off('.ColResize');
- //Remove the DataTables event so that ordering will not occur
- if (dtClickEvent) {
- $th.off('click.DT');
- this.$(document).one('click.ColResize', function (e) {
- $th.on('click.DT', dtClickEvent.handler);
+ $.each(this.s.dt.aoColumns, function (i, column) {
+ $(column.nTh).removeAttr('data-column-index');
});
- }
- };
-
- ColResize.prototype.onDblClick = function (e, $th, col) {
- if (e.target !== $th.get(0))
- return;
- if ($th.css('cursor') != 'col-resize')
- return;
-
- var width;
- switch (this.settings.dblClick) {
- case 'autoMinFit':
- width = col.autoMinWidth;
- break;
- case 'autoFit':
- width = col.autoWidth;
- break;
- default:
- width = col.initWidth;
- }
- this.resize(col, width);
- };
-
- ColResize.prototype.onMouseDown = function (e, col) {
- var _this = this;
- if (e.target !== col.nTh && e.target !== col.fhTh)
- return true;
-
- var $th = e.target === col.nTh ? this.$(col.nTh) : this.$(col.fhTh);
-
- if ($th.css('cursor') != 'col-resize' || col.resizable === false) {
- var colReorder = this.dt.settings._colReorder;
- if (colReorder) {
- colReorder._fnMouseDown.call(colReorder, e, e.target); //Here we fix the e.preventDefault() in ColReorder so that we can have working inputs in header
- }
- return true;
- }
- this.dom.mouse.startX = e.pageX;
- this.dom.mouse.prevX = e.pageX;
- this.dom.mouse.startWidth = $th.width();
- this.dom.resize = true;
- this.beforeResizing(col);
+ this.s.dt._colResize = null;
+ this.s = null;
+ },
- /* Add event handlers to the document */
- this.$(document).on('mousemove.ColResize', function (event) {
- _this.onMouseMove(event, col);
- });
- this.overrideClickHander(col, $th);
- this.$(document).one('mouseup.ColResize', function (event) {
- _this.onMouseUp(event, col);
- });
-
- return false;
- };
-
- ColResize.prototype.resize = function (col, width) {
- var colWidth = this.$(col.nTh).width();
- var moveLength = width - this.$(col.nTh).width();
- this.beforeResizing(col);
- var resized = this.resizeColumn(col, colWidth, moveLength, moveLength);
- this.afterResizing();
- return resized;
- };
-
- ColResize.prototype.beforeResizing = function (col) {
- //if (this.settings.fixedLayout && !this.dom.fixedLayout)
- // this.setTablesLayout('fixed');
- };
-
- ColResize.prototype.afterResizing = function () {
- var i;
- var columns = this.dt.settings.aoColumns;
- for (i = 0; i < columns.length; i++) {
- if (!columns[i].bVisible)
- continue;
- columns[i].sWidth = this.$(columns[i].nTh).css('width');
- }
-
- //Update the internal storage of the table's width (in case we changed it because the user resized some column and scrollX was enabled
- this.updateTableSize();
-
- //Save the state
- this.dt.settings.oInstance.oApi._fnSaveState(this.dt.settings);
- this.dom.origState = false;
- };
- ColResize.prototype.onMouseUp = function (e, col) {
- this.$(document).off('mousemove.ColResize');
- if (!this.dom.resize)
- return;
- this.dom.resize = false;
- this.afterResizing();
- };
-
- ColResize.prototype.canResizeColumn = function (col, newWidth) {
- return (col.resizable === undefined || col.resizable) && this.settings.minWidth <= newWidth && (!col.minWidth || col.minWidth <= newWidth) && (!this.settings.maxWidth || this.settings.maxWidth >= newWidth) && (!col.maxWidth || col.maxWidth >= newWidth);
- };
-
- ColResize.prototype.getColumnMaxWidth = function (col) {
- return col.maxWidth ? col.maxWidth : this.settings.maxWidth;
- };
-
- ColResize.prototype.getColumnMinWidth = function (col) {
- return col.minWidth ? col.minWidth : this.settings.minWidth;
- };
-
- ColResize.prototype.getPrevResizableColumnIdx = function (col, moveLength) {
- var columns = this.dt.settings.aoColumns;
- var colIdx = ColResizeHelper.indexOf(columns, col);
- for (var i = colIdx; i >= 0; i--) {
- if (!columns[i].bVisible)
- continue;
- var newWidth = this.$(columns[i].nTh).width() + moveLength;
- if (this.canResizeColumn(columns[i], newWidth))
- return i;
- }
- return -1;
- };
-
- ColResize.prototype.getNextResizableColumnIdx = function (col, moveLength) {
- var columns = this.dt.settings.aoColumns;
- var colIdx = ColResizeHelper.indexOf(columns, col);
- for (var i = (colIdx + 1); i < columns.length; i++) {
- if (!columns[i].bVisible)
- continue;
- var newWidth = this.$(columns[i].nTh).width() - moveLength;
- if (this.canResizeColumn(columns[i], newWidth))
- return i;
+ /**
+ * Add a data attribute to the column headers, so we know the index of
+ * the row to be reordered. This allows fast detection of the index, and
+ * for this plug-in to work with FixedHeader which clones the nodes.
+ * @private
+ */
+ "_fnSetColumnIndexes": function () {
+ $.each(this.s.dt.aoColumns, function (i, column) {
+ $(column.nTh).attr('data-column-index', i);
+ });
}
- return -1;
};
- ColResize.prototype.resizeColumn = function (col, startWidth, moveLength, lastMoveLength) {
- if (moveLength == 0 || lastMoveLength == 0 || col.resizable === false)
- return false;
- var i;
- var columns = this.dt.settings.aoColumns;
- var headCol = this.$(col.nTh);
- var headColNext = headCol.next();
- var colIdx = this.getColumnIndex(col);
- var thWidth = startWidth + moveLength;
- var thNextWidth;
- var nextColIdx;
-
- if (!this.dom.scrollX) {
- if (lastMoveLength < 0) {
- thWidth = headColNext.width() - lastMoveLength;
- nextColIdx = this.getPrevResizableColumnIdx(col, lastMoveLength);
- if (nextColIdx < 0)
- return false;
- headCol = headColNext;
- colIdx = colIdx + 1;
- headColNext = this.$(columns[nextColIdx].nTh);
- thNextWidth = headColNext.width() + lastMoveLength;
- } else {
- thWidth = headCol.width() + lastMoveLength;
- nextColIdx = this.getNextResizableColumnIdx(col, lastMoveLength);
-
- //If there is no columns that can be shrinked dont resize anymore
- if (nextColIdx < 0)
- return false;
- headColNext = this.$(columns[nextColIdx].nTh);
- thNextWidth = headColNext.width() - lastMoveLength;
- if ((this.settings.maxWidth && this.settings.maxWidth < thWidth) || col.maxWidth && col.maxWidth < thWidth)
- return false;
- }
- if (!this.canResizeColumn(columns[nextColIdx], thNextWidth) || !this.canResizeColumn(columns[colIdx], thWidth))
- return false;
- headColNext.width(thNextWidth);
-
- //If fixed header is present we have to resize the cloned column too
- if (this.dom.fixedHeader) {
- this.$(columns[nextColIdx].fhTh).width(thNextWidth);
- this.$(columns[colIdx].fhTh).width(thWidth);
-
- //If fixedfooter was enabled resize that too
- if (columns[nextColIdx].fhTf) {
- this.$(columns[nextColIdx].fhTf).width(thNextWidth);
- this.$(columns[colIdx].fhTf).width(thWidth);
+ /* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * *
+ * Static parameters
+ * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * */
+
+
+ /**
+ * ColResize default settings for initialisation
+ * @namespace
+ * @static
+ */
+ ColResize.defaults = {
+ /**
+ * Callback function that is fired when columns are resized
+ * @type function():void
+ * @default null
+ * @static
+ */
+ "resizeCallback": null,
+
+ /**
+ * Exclude array for columns that are not resizable
+ * @property exclude
+ * @type array of indexes that are excluded from resizing
+ * @default []
+ */
+ "exclude": [],
+
+ /**
+ * Check to see if user is using a fixed table width or dynamic
+ * if true:
+ * -Columns will resize themselves and their neighbour
+ * -If neighbour is excluded resize will not occur
+ * if false:
+ * -Columns will resize themselves and increase or decrease the width of the table accordingly
+ */
+ "tableWidthFixed": true,
+
+ /**
+ * Width of the resize handle in pixels
+ * @property handleWidth
+ * @type int (pixels)
+ * @default 10
+ */
+ "handleWidth": 10,
+
+ /**
+ * Right to left support, when true flips which column they are resizing on mouse down
+ * @property rtl
+ * @type bool
+ * @default false
+ */
+ "rtl": false
+ };
+
+
+ /* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * *
+ * Constants
+ * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * */
+
+ /**
+ * ColResize version
+ * @constant version
+ * @type String
+ * @default As code
+ */
+ ColResize.version = "0.0.10";
+
+
+ /* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * *
+ * DataTables interfaces
+ * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * */
+
+ // Expose
+ $.fn.dataTable.ColResize = ColResize;
+ $.fn.DataTable.ColResize = ColResize;
+
+
+ // Register a new feature with DataTables
+ if (typeof $.fn.dataTable == "function" &&
+ typeof $.fn.dataTableExt.fnVersionCheck == "function" &&
+ $.fn.dataTableExt.fnVersionCheck('1.9.3')) {
+ $.fn.dataTableExt.aoFeatures.push({
+ "fnInit": function (settings) {
+ var table = settings.oInstance;
+
+ if (!settings._colResize) {
+ var dtInit = settings.oInit;
+ var opts = dtInit.colResize || dtInit.oColResize || {};
+
+ new ColResize(settings, opts);
+ }
+ else {
+ table.oApi._fnLog(settings, 1, "ColResize attempted to initialise twice. Ignoring second");
}
- }
- } else {
- if (!this.canResizeColumn(col, thWidth))
- return false;
- var tSize = this.tableSize + moveLength + 'px';
- this.dom.scrollHeadInner.css('width', tSize);
- this.dom.scrollHeadTable.css('width', tSize);
- this.dom.scrollBodyTable.css('width', tSize);
- this.dom.scrollFootTable.css('width', tSize);
- }
- headCol.width(thWidth);
-
- //scrollX or scrollY enabled
- if (this.dom.scrollBody.length) {
- var colDomIdx = 0;
- for (i = 0; i < this.dt.settings.aoColumns.length && i != colIdx; i++) {
- if (this.dt.settings.aoColumns[i].bVisible)
- colDomIdx++;
- }
- //Get the table
- var bodyCol = this.$('thead>tr>th:nth(' + colDomIdx + ')', this.dom.scrollBodyTable);
- var footCol = this.$('thead>tr>th:nth(' + colDomIdx + ')', this.dom.scrollFootTable);
+ return null;
+ /* No node for DataTables to insert */
+ },
+ "cFeature": "Z",
+ "sFeature": "ColResize"
+ });
+ } else {
+ alert("Warning: ColResize requires DataTables 1.9.3 or greater - www.datatables.net/download");
+ }
- //This will happen only when scrollY is used without scrollX
- if (!this.dom.scrollX) {
- var nextColDomIdx = 0;
- for (i = 0; i < this.dt.settings.aoColumns.length && i != nextColIdx; i++) {
- if (this.dt.settings.aoColumns[i].bVisible)
- nextColDomIdx++;
- }
- var bodyColNext = this.$('thead>tr>th:nth(' + nextColDomIdx + ')', this.dom.scrollBodyTable);
- var footColNext = this.$('thead>tr>th:nth(' + nextColDomIdx + ')', this.dom.scrollFootTable);
- bodyColNext.width(thNextWidth);
- if (thWidth > 0)
- bodyCol.width(thWidth);
+// API augmentation
+ if ($.fn.dataTable.Api) {
+ $.fn.dataTable.Api.register('colResize.reset()', function () {
+ return this.iterator('table', function (ctx) {
+ ctx._colResize.fnReset();
+ });
+ });
+ }
- footColNext.width(thNextWidth);
- if (thWidth > 0)
- footCol.width(thWidth);
- }
+ return ColResize;
+ }; // /factory
- //Resize the table and the column
- if (this.dom.scrollX && thWidth > 0) {
- bodyCol.width(thWidth);
- footCol.width(thWidth);
- }
- }
- return true;
- };
- ColResize.prototype.onMouseMove = function (e, col) {
- var moveLength = e.pageX - this.dom.mouse.startX;
- var lastMoveLength = e.pageX - this.dom.mouse.prevX;
- this.resizeColumn(col, this.dom.mouse.startWidth, moveLength, lastMoveLength);
- this.dom.mouse.prevX = e.pageX;
- };
+// Define as an AMD module if possible
+if ( typeof define === 'function' && define.amd ) {
+ define( ['jquery', 'datatables'], factory );
+}
+else if ( typeof exports === 'object' ) {
+ // Node/CommonJS
+ factory( require('jquery'), require('datatables') );
+}
+else if (jQuery && !jQuery.fn.dataTable.ColResize) {
+ // Otherwise simply initialise as normal, stopping multiple evaluation
+ factory(jQuery, jQuery.fn.dataTable);
+}
- ColResize.prototype.destroy = function () {
- };
- ColResize.defaultSettings = {
- minWidth: 1,
- maxWidth: null,
- fixedLayout: true,
- fixedHeader: null,
- dblClick: 'initWidth'
- };
- return ColResize;
- })();
- dt.ColResize = ColResize;
- var ColResizeHelper = (function () {
- function ColResizeHelper() {
- }
- ColResizeHelper.indexOf = function (arr, item, equalFun) {
- if (typeof equalFun === "undefined") { equalFun = null; }
- for (var i = 0; i < arr.length; i++) {
- if (equalFun) {
- if (equalFun(arr[i], item))
- return i;
- } else if (arr[i] === item)
- return i;
- }
- return -1;
- };
- return ColResizeHelper;
- })();
- dt.ColResizeHelper = ColResizeHelper;
-})(dt || (dt = {}));
-
-(function ($, window, document, undefined) {
- //Register events
- $.fn.DataTable.models.oSettings.colResizeInitCompleted = [];
-
- //Register api function
- $.fn.DataTable.Api.register('colResize.init()', function (settings) {
- var colResize = new dt.ColResize($, this, settings);
- if (this.settings()[0]._bInitComplete)
- colResize.initialize();
- else
- this.one('init.dt', function () {
- colResize.initialize();
- });
- return null;
- });
-
- $.fn.DataTable.Api.register('column().resize()', function (width) {
- var oSettings = this.settings()[0];
- var colResize = oSettings.colResize;
- return colResize.resize(oSettings.aoColumns[this[0][0]], width);
- });
-
- //Add as feature
- $.fn.dataTable.ext.feature.push({
- "fnInit": function (oSettings) {
- return oSettings.oInstance.api().colResize.init(oSettings.oInit.colResize);
- },
- "cFeature": "J",
- "sFeature": "ColResize"
- });
-}(jQuery, window, document, undefined)); \ No newline at end of file
+})(window, document); \ No newline at end of file
diff --git a/wqflask/wqflask/templates/collections/list.html b/wqflask/wqflask/templates/collections/list.html
index a00878a0..c05b694b 100755
--- a/wqflask/wqflask/templates/collections/list.html
+++ b/wqflask/wqflask/templates/collections/list.html
@@ -4,8 +4,6 @@
<link rel="stylesheet" type="text/css" href="/static/new/packages/DataTables/css/jquery.dataTables.css" />
<link rel="stylesheet" type="text/css" href="/static/packages/DT_bootstrap/DT_bootstrap.css" />
<link rel="stylesheet" type="text/css" href="/static/packages/TableTools/media/css/TableTools.css" />
- <link rel="stylesheet" type="text/css" href="//cdn.datatables.net/fixedheader/2.1.2/css/dataTables.fixedHeader.css" >
- <link rel="stylesheet" type="text/css" href="//cdn.datatables.net/fixedcolumns/3.0.4/css/dataTables.fixedColumns.css">
{% endblock %}
{% block content %}
<!-- Start of body -->
@@ -59,30 +57,20 @@
<script language="javascript" type="text/javascript" src="/static/new/packages/DataTables/js/jquery.dataTables.min.js"></script>
<script language="javascript" type="text/javascript" src="/static/new/packages/DataTables/js/dataTables.naturalSort.js"></script>
<script language="javascript" type="text/javascript" src="/static/new/packages/DataTables/extensions/dataTables.colResize.js"></script>
+ <script language="javascript" type="text/javascript" src="/static/new/packages/DataTables/extensions/dataTables.colReorder.js"></script>
<script language="javascript" type="text/javascript" src="/static/packages/DT_bootstrap/DT_bootstrap.js"></script>
<script language="javascript" type="text/javascript" src="/static/packages/TableTools/media/js/TableTools.min.js"></script>
- <script language="javascript" type="text/javascript" src="//cdn.datatables.net/fixedheader/2.1.2/js/dataTables.fixedHeader.min.js"></script>
- <script language="javascript" type="text/javascript" src="//cdn.datatables.net/fixedcolumns/3.0.4/js/dataTables.fixedColumns.min.js"></script>
<script>
$('#trait_table').dataTable( {
- "sDom": "Ztir",
+ "sDom": "RZtir",
"iDisplayLength": -1,
"autoWidth": true,
- "bLengthChange": true,
"bDeferRender": true,
"bSortClasses": false,
"scrollY": "600px",
- "scrollX": true,
"scrollCollapse": true,
- "colResize": {
- "tableWidthFixed": false
- },
"paging": false
} );
- var table = $('#trait_table').DataTable();
- //new $.fn.dataTable.FixedHeader( table );
- new $.fn.dataTable.FixedColumns( table );
-
</script>
{% endblock %}
diff --git a/wqflask/wqflask/templates/collections/view.html b/wqflask/wqflask/templates/collections/view.html
index 49df6af5..29c65058 100755
--- a/wqflask/wqflask/templates/collections/view.html
+++ b/wqflask/wqflask/templates/collections/view.html
@@ -4,8 +4,6 @@
<link rel="stylesheet" type="text/css" href="/static/new/packages/DataTables/css/jquery.dataTables.css" />
<link rel="stylesheet" type="text/css" href="/static/packages/DT_bootstrap/DT_bootstrap.css" />
<link rel="stylesheet" type="text/css" href="/static/packages/TableTools/media/css/TableTools.css" />
- <link rel="stylesheet" type="text/css" href="//cdn.datatables.net/fixedheader/2.1.2/css/dataTables.fixedHeader.css" >
- <link rel="stylesheet" type="text/css" href="//cdn.datatables.net/fixedcolumns/3.0.4/css/dataTables.fixedColumns.css">
{% endblock %}
{% block content %}
<!-- Start of body -->
@@ -121,10 +119,9 @@
<script language="javascript" type="text/javascript" src="/static/new/packages/DataTables/js/jquery.dataTables.min.js"></script>
<script language="javascript" type="text/javascript" src="/static/new/packages/DataTables/js/dataTables.naturalSort.js"></script>
<script language="javascript" type="text/javascript" src="/static/new/packages/DataTables/extensions/dataTables.colResize.js"></script>
+ <script language="javascript" type="text/javascript" src="/static/new/packages/DataTables/extensions/dataTables.colReorder.js"></script>
<script language="javascript" type="text/javascript" src="/static/packages/DT_bootstrap/DT_bootstrap.js"></script>
<script language="javascript" type="text/javascript" src="/static/packages/TableTools/media/js/TableTools.min.js"></script>
- <script language="javascript" type="text/javascript" src="//cdn.datatables.net/fixedheader/2.1.2/js/dataTables.fixedHeader.min.js"></script>
- <script language="javascript" type="text/javascript" src="//cdn.datatables.net/fixedcolumns/3.0.4/js/dataTables.fixedColumns.min.js"></script>
<script language="javascript" type="text/javascript">
@@ -152,25 +149,17 @@
"width": "15%" },
{ "type": "natural" }
],
- "sDom": "Ztir",
+ "sDom": "ZRtir",
"iDisplayLength": -1,
"autoWidth": true,
- "bLengthChange": true,
"bDeferRender": true,
"bSortClasses": false,
"scrollY": "600px",
- "scrollX": true,
"scrollCollapse": true,
- "colResize": {
- "tableWidthFixed": false
- },
"paging": false
} );
console.timeEnd("Creating table");
- var table = $('#trait_table').DataTable();
- new $.fn.dataTable.FixedColumns( table );
-
});
</script>
diff --git a/wqflask/wqflask/templates/correlation_page.html b/wqflask/wqflask/templates/correlation_page.html
index d53f930d..62407555 100755
--- a/wqflask/wqflask/templates/correlation_page.html
+++ b/wqflask/wqflask/templates/correlation_page.html
@@ -229,22 +229,26 @@
{ "type": "natural" },
{ "type": "natural" }
],
- "sDom": "RJtir",
+ "sDom": "RZtir",
"iDisplayLength": -1,
"autoWidth": true,
"bLengthChange": true,
"bDeferRender": true,
"bSortClasses": false,
- "scrollY": "700px",
- "scrollCollapse": false,
+ //"scrollY": "700px",
+ //"scrollCollapse": false,
"colResize": {
"tableWidthFixed": false
},
"paging": false
} );
+
+ var table = $('#corr_results').DataTable();
+ new $.fn.dataTable.FixedHeader( table );
+
{% elif target_dataset.type == "Publish" %}
$('#corr_results').dataTable( {
- "aoColumns": [
+ "columns": [
{ "type": "natural" },
{ "type": "natural" },
{ "type": "natural" },
@@ -257,7 +261,7 @@
{ "type": "natural" },
{ "type": "natural" }
],
- "sDom": "RJtir",
+ "sDom": "RZtir",
"iDisplayLength": -1,
"autoWidth": true,
"bLengthChange": true,
@@ -280,7 +284,7 @@
{ "type": "natural" },
{ "type": "natural" }
],
- "sDom": "RJtir",
+ "sDom": "RZtir",
"iDisplayLength": -1,
"autoWidth": true,
"bLengthChange": true,
diff --git a/wqflask/wqflask/templates/index_page.html b/wqflask/wqflask/templates/index_page.html
index 49067e37..2bbfcd91 100755
--- a/wqflask/wqflask/templates/index_page.html
+++ b/wqflask/wqflask/templates/index_page.html
@@ -79,7 +79,7 @@
<label for="or_search" class="col-xs-1 control-label" style="padding-left: 0px; padding-right: 0px; width: 65px !important;">Get Any:</label>
<div class="col-xs-10 controls">
<div class="col-xs-8">
- <textarea name="search_terms_or" rows="1" class="form-control search-query" style="max-width: 550px; width: 450px !important;" id="or_search"></textarea>
+ <textarea onkeydown="pressed(event)" name="search_terms_or" rows="1" class="form-control search-query" style="max-width: 550px; width: 450px !important;" id="or_search"></textarea>
</div>
</div>
</div>
@@ -100,7 +100,7 @@
<label for="and_search" class="col-xs-1 control-label" style="padding-left: 0px; padding-right: 0px; width: 65px !important;">Combined:</label>
<div class="col-xs-10 controls">
<div class="col-xs-8">
- <textarea name="search_terms_and" rows="1" class="form-control search-query" style="max-width: 550px; width: 450px !important;" id="and_search"></textarea>
+ <textarea onkeydown="pressed(event)" name="search_terms_and" rows="1" class="form-control search-query" style="max-width: 550px; width: 450px !important;" id="and_search"></textarea>
</div>
</div>
</div>
@@ -265,4 +265,15 @@
{% block js %}
<script src="/static/new/javascript/dataset_select_menu.js"></script>
+
+ <script>
+ function pressed(e) {
+ // Has the enter key been pressed?
+ if ( (window.event ? event.keyCode : e.which) == 13) {
+ // If it has been so, manually submit the <form>
+ document.forms[0].submit();
+ }
+ }
+ </script>
+
{% endblock %} \ No newline at end of file
diff --git a/wqflask/wqflask/templates/marker_regression.html b/wqflask/wqflask/templates/marker_regression.html
index d8f64c20..91808fcf 100755
--- a/wqflask/wqflask/templates/marker_regression.html
+++ b/wqflask/wqflask/templates/marker_regression.html
@@ -26,26 +26,36 @@
</div>
</div>
- <div>
+ <div style="width:60%;">
<h2>
Results
</h2>
- <table cellpadding="0" cellspacing="0" border="0" id="qtl_results" class="table table-hover table-striped table-bordered">
+ <table id="qtl_results" class="table table-hover table-striped">
<thead>
<tr>
- <td>Index</td>
- <td>LOD Score</td>
- <td>Chr</td>
- <td>Mb</td>
- <td>Locus</td>
+ <th>Index</th>
+ <th>LOD Score</th>
+ <th>Chr</th>
+ <th>Mb</th>
+ <th>Locus</th>
</tr>
</thead>
<tbody>
- {% for marker in filtered_markers %}
- {% if marker.lod_score > lod_cutoff %}
+ {% for marker in qtl_results %}
+ {% if (score_type == "LOD" and marker.lod_score > cutoff) or
+ (score_type == "LRS" and marker.lrs_value > cutoff) %}
<tr>
- <td>{{loop.index}}</td>
+ <td>
+ {{loop.index}}
+ <input type="checkbox" name="selectCheck"
+ class="checkbox edit_sample_checkbox"
+ value="{{ marker.name }}" checked="checked">
+ </td>
+ {% if score_type == "LOD" %}
<td>{{marker.lod_score}}</td>
+ {% else %}
+ <td>{{marker.lrs_value}}</td>
+ {% endif %}
<td>{{marker.chr}}</td>
<td>{{marker.Mb}}</td>
<td>{{marker.name}}</td>
@@ -70,26 +80,24 @@
$(document).ready( function () {
console.time("Creating table");
$('#qtl_results').dataTable( {
- //"sDom": "<<'span3'l><'span3'T><'span4'f>'row-fluid'r>t<'row-fluid'<'span6'i><'span6'p>>",
- "sDom": "lTftipr",
- "oTableTools": {
- "aButtons": [
- "copy",
- "print",
- {
- "sExtends": "collection",
- "sButtonText": 'Save <span class="caret" />',
- "aButtons": [ "csv", "xls", "pdf" ]
- }
+ "columns": [
+ { "type": "natural" },
+ { "type": "natural" },
+ { "type": "natural" },
+ { "type": "natural" },
+ { "type": "natural" }
],
- "sSwfPath": "/static/packages/TableTools/media/swf/copy_csv_xls_pdf.swf"
- },
- "iDisplayLength": 50,
- "bLengthChange": true,
+ "sDom": "ZRtir",
+ "iDisplayLength": -1,
+ "autoWidth": true,
"bDeferRender": true,
- "bSortClasses": false
+ "bSortClasses": false,
+ "scrollY": "700px",
+ "scrollCollapse": true,
+ "paging": false
} );
console.timeEnd("Creating table");
+
});
</script>
{% endblock %}
diff --git a/wqflask/wqflask/templates/search_result_page.html b/wqflask/wqflask/templates/search_result_page.html
index b9bb65fd..335ab213 100755
--- a/wqflask/wqflask/templates/search_result_page.html
+++ b/wqflask/wqflask/templates/search_result_page.html
@@ -188,19 +188,16 @@
{ "type": "natural", "width": "15%" },
{ "type": "natural" }
],
- "sDom": "RJtir",
+ "sDom": "RZtir",
"iDisplayLength": -1,
"autoWidth": false,
- "bLengthChange": true,
"bDeferRender": true,
"bSortClasses": false,
"scrollY": "700px",
"scrollCollapse": false,
- "colResize": {
- "tableWidthFixed": false,
- },
"paging": false
} );
+
{% elif dataset.type == 'Publish' %}
$('#trait_table').DataTable( {
"columns": [
@@ -213,17 +210,13 @@
{ "type": "natural", "width": "15%"},
{ "type": "natural" }
],
- "sDom": "RJtir",
+ "sDom": "RZtir",
"iDisplayLength": -1,
"autoWidth": false,
- "bLengthChange": true,
"bDeferRender": true,
"bSortClasses": false,
"scrollY": "700px",
"scrollCollapse": false,
- "colResize": {
- "tableWidthFixed": false,
- },
"paging": false
} );
{% elif dataset.type == 'Geno' %}
@@ -233,17 +226,13 @@
{ "type": "natural" },
{ "type": "natural", "width": "40%"}
],
- "sDom": "RJtir",
+ "sDom": "RZtir",
"iDisplayLength": -1,
- "autoWidth": false,
- "bLengthChange": true,
+ "autoWidth": true,
"bDeferRender": true,
"bSortClasses": false,
"scrollY": "700px",
"scrollCollapse": false,
- "colResize": {
- "tableWidthFixed": false,
- },
"paging": false
} );
{% endif %}
diff --git a/wqflask/wqflask/templates/show_trait.html b/wqflask/wqflask/templates/show_trait.html
index 40f6eafd..6199f931 100755
--- a/wqflask/wqflask/templates/show_trait.html
+++ b/wqflask/wqflask/templates/show_trait.html
@@ -13,8 +13,6 @@
<link rel="stylesheet" type="text/css" href="/static/new/packages/DataTables/css/jquery.dataTables.css" />
<link rel="stylesheet" type="text/css" href="/static/packages/DT_bootstrap/DT_bootstrap.css" />
<link rel="stylesheet" type="text/css" href="/static/packages/TableTools/media/css/TableTools.css" />
- <link rel="stylesheet" type="text/css" href="/static/new/packages/DataTables/extensions/dataTables.fixedHeader.css" >
- <link rel="stylesheet" type="text/css" href="//cdn.datatables.net/fixedcolumns/3.0.4/css/dataTables.fixedColumns.css">
{% endblock %}
{% block content %} <!-- Start of body -->
@@ -82,6 +80,7 @@
<div class="panel-body">
{% include 'show_trait_mapping_tools.html' %}
</div>
+ <div id="alert_placeholder"></div>
</div>
</div>
<div class="panel panel-default">
@@ -150,8 +149,6 @@
<script language="javascript" type="text/javascript" src="/static/new/packages/DataTables/js/dataTables.naturalSort.js"></script>
<script language="javascript" type="text/javascript" src="/static/new/packages/DataTables/extensions/dataTables.colResize.js"></script>
<script language="javascript" type="text/javascript" src="/static/new/packages/DataTables/extensions/dataTables.colReorder.js"></script>
- <script language="javascript" type="text/javascript" src="/static/new/packages/DataTables/extensions/dataTables.fixedHeader.js"></script>
- <script language="javascript" type="text/javascript" src="//cdn.datatables.net/fixedcolumns/3.0.4/js/dataTables.fixedColumns.min.js"></script>
<script language="javascript" type="text/javascript" src="/static/packages/DT_bootstrap/DT_bootstrap.js"></script>
<script language="javascript" type="text/javascript" src="/static/packages/TableTools/media/js/TableTools.min.js"></script>
<script type="text/javascript" charset="utf-8">
@@ -212,7 +209,7 @@
{ "bSortable": false },
{ "type": "cust-txt" }
],
- "sDom": "RJtir",
+ "sDom": "RZtir",
"oTableTools": {
"aButtons": [
"copy",
@@ -248,7 +245,7 @@
null,
{ "type": "cust-txt" }
],
- "sDom": "RJtir",
+ "sDom": "RZtir",
"oTableTools": {
"aButtons": [
"copy",
diff --git a/wqflask/wqflask/templates/show_trait_edit_data.html b/wqflask/wqflask/templates/show_trait_edit_data.html
index 5c7b0417..ca8e02de 100755
--- a/wqflask/wqflask/templates/show_trait_edit_data.html
+++ b/wqflask/wqflask/templates/show_trait_edit_data.html
@@ -81,12 +81,12 @@
<table class="table-hover table-striped" id="samples_{{ sample_type.sample_group_type }}" style="float: left;">
<thead>
<tr>
- <th>Index</td>
- <th>Sample</td>
- <th>Value</td>
+ <th>Index</th>
+ <th>Sample</th>
+ <th>Value</th>
{% if sample_type.se_exists() %}
- <th>&nbsp;</td>
- <th>SE</td>
+ <th>&nbsp;</th>
+ <th>SE</th>
{% endif %}
{% for attribute in sample_type.attributes|sort() %}
<th>
diff --git a/wqflask/wqflask/templates/show_trait_mapping_tools.html b/wqflask/wqflask/templates/show_trait_mapping_tools.html
index 6f69bcfa..eea9b295 100755
--- a/wqflask/wqflask/templates/show_trait_mapping_tools.html
+++ b/wqflask/wqflask/templates/show_trait_mapping_tools.html
@@ -35,7 +35,7 @@
<div class="mapping_method_fields form-group">
<label for="mapping_permutations" class="col-xs-2 control-label">Permutations</label>
<div style="margin-left: 20px;" class="col-xs-4 controls">
- <input name="num_pylmm" value="2000" type="text" class="form-control">
+ <input name="num_pylmm" value="" type="text" class="form-control">
</div>
</div>
<div id="permutations_alert" class="alert alert-error alert-warning" style="display:none;">
@@ -211,6 +211,7 @@
</button>
</div>
</div>
+ <!--<div id="alert_placeholder"></div>-->
</div>
</div>
{% endif %}
@@ -268,7 +269,6 @@
<dd>R/qtl is an extensible, interactive environment for mapping quantitative trait loci (QTL) in experimental crosses.</dd>
</dl>
</div>
- <div id="alert_placeholder"></div>
<div id="mapping_result_holder_wrapper" style="display:none;">
<div id="mapping_result_holder"></div>
</div>