diff options
| -rw-r--r-- | wqflask/tests/unit/wqflask/marker_regression/test_rqtl_mapping.py | 9 |
1 files changed, 2 insertions, 7 deletions
diff --git a/wqflask/tests/unit/wqflask/marker_regression/test_rqtl_mapping.py b/wqflask/tests/unit/wqflask/marker_regression/test_rqtl_mapping.py index bd97b2d2..00a05d2d 100644 --- a/wqflask/tests/unit/wqflask/marker_regression/test_rqtl_mapping.py +++ b/wqflask/tests/unit/wqflask/marker_regression/test_rqtl_mapping.py @@ -13,12 +13,10 @@ class MockDataset: class TestRqtlMapping(unittest.TestCase): """Tests for functions in rqtl_mapping.py""" - @mock.patch("wqflask.marker_regression.rqtl_mapping.process_rqtl_results") - @mock.patch("wqflask.marker_regression.rqtl_mapping.process_perm_results") @mock.patch("wqflask.marker_regression.rqtl_mapping.requests.post") @mock.patch("wqflask.marker_regression.rqtl_mapping.locate") @mock.patch("wqflask.marker_regression.rqtl_mapping.write_phenotype_file") - def test_run_rqtl_with_perm(self, mock_write_pheno_file, mock_locate, mock_post, mock_process_perm, mock_process_rqtl): + def test_run_rqtl_with_perm(self, mock_write_pheno_file, mock_locate, mock_post): """Test for run_rqtl with permutations > 0""" dataset_group = MockGroup( {"name": "GP1", "genofile": "file_geno"}) @@ -28,8 +26,6 @@ class TestRqtlMapping(unittest.TestCase): mock_locate.return_value = "geno_filename" mock_post.return_value = {"output_file": "output_filename", "rqtl_cmd": "the_command"} - mock_process_perm.return_value = [[], 3, 4] - mock_process_rqtl.return_value = [] results = run_rqtl(trait_name="the_trait", vals=[], samples=[], dataset=dataset, mapping_scale="cM", model="normal", method="hk", @@ -39,6 +35,5 @@ class TestRqtlMapping(unittest.TestCase): mock_write_pheno_file.assert_called_once() mock_locate.assert_called_once() mock_post.assert_called_once() - mock_process_perm.assert_called_once() - mock_process_rqtl.assert_called_once() + self.assertEqual(results, ([], 3, 4, [])) |