diff options
12 files changed, 215 insertions, 74 deletions
diff --git a/wqflask/maintenance/gen_select_dataset.py b/wqflask/maintenance/gen_select_dataset.py index 6553f090..f62d0cc1 100644 --- a/wqflask/maintenance/gen_select_dataset.py +++ b/wqflask/maintenance/gen_select_dataset.py @@ -96,13 +96,14 @@ def get_groups(species): Cursor.execute("""select InbredSet.Name, InbredSet.FullName from InbredSet, Species, ProbeFreeze, GenoFreeze, PublishFreeze where Species.Name = '%s' - and InbredSet.SpeciesId = Species.Id and InbredSet.Name != 'BXD300' and + and InbredSet.SpeciesId = Species.Id and (PublishFreeze.InbredSetId = InbredSet.Id or GenoFreeze.InbredSetId = InbredSet.Id or ProbeFreeze.InbredSetId = InbredSet.Id) group by InbredSet.Name - order by InbredSet.Name""" % species_name) - groups[species_name] = list(Cursor.fetchall()) + order by InbredSet.FullName""" % species_name) + results = Cursor.fetchall() + groups[species_name] = list(results) return groups diff --git a/wqflask/wqflask/marker_regression/marker_regression.py b/wqflask/wqflask/marker_regression/marker_regression.py index 9e01be3e..bcb14451 100644 --- a/wqflask/wqflask/marker_regression/marker_regression.py +++ b/wqflask/wqflask/marker_regression/marker_regression.py @@ -277,7 +277,7 @@ class MarkerRegression(object): if ('lod_score' in marker.keys()) or ('lrs_value' in marker.keys()): self.qtl_results.append(marker) - export_mapping_results(self.qtl_results, self.mapping_results_path, self.mapping_scale, self.score_type) + export_mapping_results(self.dataset, self.this_trait, self.qtl_results, self.mapping_results_path, self.mapping_scale, self.score_type) self.trimmed_markers = trim_markers_for_table(results) @@ -608,29 +608,35 @@ def create_snp_iterator_file(group): with gzip.open(snp_file_base, "wb") as fh: pickle.dump(data, fh, pickle.HIGHEST_PROTOCOL) -def export_mapping_results(markers, results_path, mapping_scale, score_type): +def export_mapping_results(dataset, trait, markers, results_path, mapping_scale, score_type): with open(results_path, "w+") as output_file: - output_file.write("Name\tChr\t") + output_file.write("Population: " + dataset.group.species.title() + " " + dataset.group.name + "\n") + output_file.write("Data Set: " + dataset.fullname + "\n") + if dataset.type == "ProbeSet": + output_file.write("Gene Symbol: " + trait.symbol + "\n") + output_file.write("Location: " + str(trait.chr) + " @ " + str(trait.mb) + " Mb\n") + output_file.write("\n") + output_file.write("Name,Chr,") if mapping_scale == "physic": - output_file.write("Mb\t" + score_type) + output_file.write("Mb," + score_type) else: - output_file.write("Cm\t" + score_type) + output_file.write("Cm," + score_type) if "additive" in markers[0].keys(): - output_file.write("\tAdditive") + output_file.write(",Additive") if "dominance" in markers[0].keys(): - output_file.write("\tDominance") + output_file.write(",Dominance") output_file.write("\n") for i, marker in enumerate(markers): logger.debug("THE MARKER:", marker) - output_file.write(marker['name'] + "\t" + str(marker['chr']) + "\t" + str(marker['Mb']) + "\t") + output_file.write(marker['name'] + "," + str(marker['chr']) + "," + str(marker['Mb']) + ",") if "lod_score" in marker.keys(): output_file.write(str(marker['lod_score'])) else: output_file.write(str(marker['lrs_value'])) if "additive" in marker.keys(): - output_file.write("\t" + str(marker['additive'])) + output_file.write("," + str(marker['additive'])) if "dominance" in marker.keys(): - output_file.write("\t" + str(marker['dominance'])) + output_file.write("," + str(marker['dominance'])) if i < (len(markers) - 1): output_file.write("\n") diff --git a/wqflask/wqflask/marker_regression/marker_regression_gn1.py b/wqflask/wqflask/marker_regression/marker_regression_gn1.py index ff1fb492..93bd9d42 100644 --- a/wqflask/wqflask/marker_regression/marker_regression_gn1.py +++ b/wqflask/wqflask/marker_regression/marker_regression_gn1.py @@ -1801,9 +1801,9 @@ class MarkerRegression(object): distScale = 10 else: distScale = 5 - for i, tickdists in enumerate(range(distScale, int(ceil(distLen)), distScale)): + for j, tickdists in enumerate(range(distScale, int(ceil(distLen)), distScale)): canvas.drawLine(startPosX + tickdists*plotXScale, yZero, startPosX + tickdists*plotXScale, yZero + 7, color=pid.black, width=1*zoom) - if i % 2 == 0: + if j % 2 == 0: canvas.drawString(str(tickdists), startPosX+tickdists*plotXScale, yZero + 10*zoom, color=pid.black, font=MBLabelFont, angle=270) startPosX += (self.ChrLengthDistList[i]+self.GraphInterval)*plotXScale diff --git a/wqflask/wqflask/marker_regression/plink_mapping.py b/wqflask/wqflask/marker_regression/plink_mapping.py index 3d31da1a..4de88f00 100644 --- a/wqflask/wqflask/marker_regression/plink_mapping.py +++ b/wqflask/wqflask/marker_regression/plink_mapping.py @@ -14,7 +14,7 @@ def run_plink(this_trait, dataset, species, vals, maf): gen_pheno_txt_file(dataset, vals) #gen_pheno_txt_file_plink(this_trait, dataset, vals, pheno_filename = plink_output_filename) - plink_command = PLINK_COMMAND + ' --noweb --bfile %s/%s --no-fid --no-parents --no-sex --maf %s --missing-phenotype -9 --out %s/%s --assoc ' % ( + plink_command = PLINK_COMMAND + ' --noweb --bfile %s/%s --no-pheno --no-fid --no-parents --no-sex --maf %s --out %s%s --assoc ' % ( flat_files('mapping'), dataset.group.name, maf, TMPDIR, plink_output_filename) logger.debug("plink_command:", plink_command) @@ -48,7 +48,7 @@ def gen_pheno_txt_file(this_dataset, vals): this_val = -9 else: this_val = vals[i] - outfile.write(line[1] + " " + line[1] + " " + line[2] + " " + line[3] + " " + line[4] + " " + str(this_val) + "\n") + outfile.write("0 " + line[1] + " " + line[2] + " " + line[3] + " " + line[4] + " " + str(this_val) + "\n") def gen_pheno_txt_file_plink(this_trait, dataset, vals, pheno_filename = ''): ped_sample_list = get_samples_from_ped_file(dataset) @@ -106,7 +106,7 @@ def parse_plink_output(output_filename, species): threshold_p_value = 1 - result_fp = open("%s/%s.qassoc"% (TMPDIR, output_filename), "rb") + result_fp = open("%s%s.qassoc"% (TMPDIR, output_filename), "rb") header_line = result_fp.readline()# read header line line = result_fp.readline() diff --git a/wqflask/wqflask/static/new/javascript/dataset_menu_structure.json b/wqflask/wqflask/static/new/javascript/dataset_menu_structure.json index 75767f47..8de85a86 100644 --- a/wqflask/wqflask/static/new/javascript/dataset_menu_structure.json +++ b/wqflask/wqflask/static/new/javascript/dataset_menu_structure.json @@ -1918,12 +1918,12 @@ [ "797", "EPFL_AdiPro0416", - "EPFL/ETHZ BXD Brown Adipose, Total Tissue Proteome, Chow Diet (Apr16) Light SWATH **" + "EPFL/ETHZ BXD Brown Adipose, Total Tissue Proteome, Chow Diet (Apr16) Light SWATH" ], [ "798", "EPFL_AdiMitPro0416", - "EPFL/ETHZ BXD Brown Adipose, Isolated Mitochondria Proteome, Chow Diet (Apr16) Light SWATH **" + "EPFL/ETHZ BXD Brown Adipose, Isolated Mitochondria Proteome, Chow Diet (Apr16) Light SWATH" ] ], "Adipose mRNA": [ @@ -2021,6 +2021,21 @@ "UCHSC BXD Whole Brain M430 2.0 (Nov06) RMA" ], [ + "113", + "IBR_M_0606_R", + "INIA Brain mRNA M430 (Jun06) RMA" + ], + [ + "101", + "IBR_M_0106_P", + "INIA Brain mRNA M430 (Jan06) PDNN" + ], + [ + "102", + "IBR_M_0106_R", + "INIA Brain mRNA M430 (Jan06) RMA" + ], + [ "95", "BR_U_1105_P", "UTHSC Brain mRNA U74Av2 (Nov05) PDNN" @@ -2065,6 +2080,36 @@ ], "Cerebellum mRNA": [ [ + "72", + "GCB_M2_0505_R", + "GE-NIAAA Cerebellum mRNA M430v2 (May05) RMA" + ], + [ + "73", + "GCB_M2_0505_P", + "GE-NIAAA Cerebellum mRNA M430v2 (May05) PDNN" + ], + [ + "71", + "GCB_M2_0505_M", + "GE-NIAAA Cerebellum mRNA M430v2 (May05) MAS5" + ], + [ + "56", + "CB_M_0305_R", + "SJUT Cerebellum mRNA M430 (Mar05) RMA" + ], + [ + "55", + "CB_M_0305_P", + "SJUT Cerebellum mRNA M430 (Mar05) PDNN" + ], + [ + "54", + "CB_M_0305_M", + "SJUT Cerebellum mRNA M430 (Mar05) MAS5" + ], + [ "46", "CB_M_1004_R", "SJUT Cerebellum mRNA M430 (Oct04) RMA" @@ -2173,6 +2218,26 @@ "819", "UCLA_BXD_Aor_Jan16", "UCLA BXD Aorta Affy M430 2.0 (Jan16) RMA" + ], + [ + "485", + "EPFL-LISPBXDHeCD0114", + "EPFL/LISP BXD CD Heart Affy Mouse Gene 2.0 ST Gene Level (Jan14) RMA" + ], + [ + "486", + "EPFL-LISPBXDHeHFD0114", + "EPFL/LISP BXD HFD Heart Affy Mouse Gene 2.0 ST Gene Level (Jan14) RMA" + ], + [ + "487", + "EPFL-LISPBXDHeCDEx0114", + "EPFL/LISP BXD CD Heart Affy Mouse Gene 2.0 ST Exon Level (Jan14) RMA" + ], + [ + "488", + "EPFL-LISPBXDHeHFDEx0114", + "EPFL/LISP BXD HFD Heart Affy Mouse Gene 2.0 ST Exon Level (Jan14) RMA" ] ], "Hematopoietic Cells mRNA": [ @@ -2909,6 +2974,39 @@ ] ] }, + "BXD300": { + "Genotypes": [ + [ + "None", + "BXD300Geno", + "BXD300 Genotypes" + ] + ], + "Liver mRNA": [ + [ + "105", + "LV_G_0106_B", + "UNC Agilent G4121A Liver LOWESS Stanford (Jan06) Both Sexes" + ], + [ + "103", + "LV_G_0106_M", + "UNC Agilent G4121A Liver LOWESS Stanford (Jan06) Males" + ], + [ + "104", + "LV_G_0106_F", + "UNC Agilent G4121A Liver LOWESS Stanford (Jan06) Females" + ] + ], + "Phenotypes": [ + [ + "None", + "BXD300Publish", + "BXD300 Published Phenotypes" + ] + ] + }, "BXH": { "Bone Femur mRNA": [ [ @@ -3485,7 +3583,7 @@ [ "799", "FGUCAS_BAdip0516", - "FGUCAS BXH/HXB Brown Adipose Affy Rat Gene 2.0 ST (May16) log2 **" + "FGUCAS BXH/HXB Brown Adipose Affy Rat Gene 2.0 ST (May16) log2" ] ], "Adrenal Gland mRNA": [ @@ -3652,6 +3750,10 @@ ], "human": [ [ + "HB", + "Brain, Aging: AD, HD, Normal Gene Expression (Harvard/Merck)" + ], + [ "AD-cases-controls", "Brain, Aging: AD, Normal Gene Expression (Liang)" ], @@ -3664,6 +3766,14 @@ "Brain, Aging: Normal Gene Expression (UCI/Cotman)" ], [ + "HCP", + "Brain, Cognition, Human Connectome Project" + ], + [ + "HSB", + "Brain, Development: Normal Gene Expression (Yale/Sestan)" + ], + [ "Brain-Normal-NIH-Gibbs", "Brain: Normal Gene Expression (NIH/Gibbs)" ], @@ -3672,10 +3782,6 @@ "Child Development: CANDLE Cohort with Genotypes (TUCI/UTHSC)" ], [ - "CEPH-2004", - "Lymphoblastoid Cells: Gene Expression (CEPH, Williams)" - ], - [ "GTEx", "GTEx v3 All Tissues, RNA-Seq with Genotypes" ], @@ -3684,14 +3790,6 @@ "GTEx v5 All Tissues, RNA-Seq with Genotypes" ], [ - "HB", - "Brain, Aging: AD, HD, Normal Gene Expression (Harvard/Merck)" - ], - [ - "HCP", - "Brain, Cognition, Human Connectome Project" - ], - [ "HLC", "Liver: Normal Gene Expression with Genotypes (Merck)" ], @@ -3700,8 +3798,8 @@ "Lung: Normal Gene Expression (Merck)" ], [ - "HSB", - "Brain, Development: Normal Gene Expression (Yale/Sestan)" + "CEPH-2004", + "Lymphoblastoid Cells: Gene Expression (CEPH, Williams)" ], [ "Islets-Gerling", @@ -3726,8 +3824,8 @@ "B6BTBRF2" ], [ - "B6D2", - "Glaucoma and Aged Retina, UTHSC" + "Linsenbardt-Boehm", + "B6D2 EtOH Selected Advanced Intercross" ], [ "B6D2F2", @@ -3738,10 +3836,6 @@ "B6D2F2 PSU" ], [ - "B6D2RI", - "BXD Aged" - ], - [ "BDF2-1999", "BDF2 UCLA" ], @@ -3750,28 +3844,36 @@ "BDF2-2005" ], [ - "BHF2", - "BHF2 (Apoe Null) UCLA" - ], - [ "BHHBF2", "BH/HB F2 UCLA" ], [ + "BHF2", + "BHF2 (Apoe Null) UCLA" + ], + [ "BXD", "BXD" ], [ + "B6D2RI", + "BXD Aged" + ], + [ "BXD-Bone", "BXD Bone" ], [ + "BXD300", + "BXD300" + ], + [ "BXH", "BXH" ], [ - "C57BL-6JxC57BL-6NJF2", - "Reduced Complexity Cross (B6JxB6N F2)" + "CTB6F2", + "CastB6/B6Cast F2 UCLA" ], [ "CFW", @@ -3790,10 +3892,6 @@ "Chronic Mild Stress" ], [ - "CTB6F2", - "CastB6/B6Cast F2 UCLA" - ], - [ "CXB", "CXB" ], @@ -3802,6 +3900,10 @@ "Ethanol-Medicated Stress Reduction" ], [ + "B6D2", + "Glaucoma and Aged Retina, UTHSC" + ], + [ "HS", "Heterogeneous Stock" ], @@ -3810,10 +3912,6 @@ "Heterogeneous Stock Collaborative Cross" ], [ - "Linsenbardt-Boehm", - "B6D2 EtOH Selected Advanced Intercross" - ], - [ "LXS", "LXS" ], @@ -3826,6 +3924,10 @@ "NZB/FVB N2 NCI" ], [ + "C57BL-6JxC57BL-6NJF2", + "Reduced Complexity Cross (B6JxB6N F2)" + ], + [ "Scripps-2013", "Scripps C57BL/6J" ], @@ -3842,6 +3944,10 @@ ], "rat": [ [ + "HXBBXH", + "HXB/BXH" + ], + [ "HSNIH-Palmer", "NIH Heterogeneous Stock (Palmer)" ], @@ -3850,10 +3956,6 @@ "NIH Heterogeneous Stock (RGSMC 2013)" ], [ - "HXBBXH", - "HXB/BXH" - ], - [ "SRxSHRSPF2", "UIOWA SRxSHRSP F2" ] @@ -3886,7 +3988,7 @@ ], [ "rat", - "Rat (rn3)" + "Rat (rn6)" ], [ "drosophila", @@ -4905,6 +5007,20 @@ "Phenotypes" ] ], + "BXD300": [ + [ + "Phenotypes", + "Phenotypes" + ], + [ + "Genotypes", + "Genotypes" + ], + [ + "Liver mRNA", + "Liver mRNA" + ] + ], "BXH": [ [ "Phenotypes", diff --git a/wqflask/wqflask/static/new/javascript/dataset_select_menu_orig.js b/wqflask/wqflask/static/new/javascript/dataset_select_menu_orig.js index fd96eb78..d5ce6f84 100644 --- a/wqflask/wqflask/static/new/javascript/dataset_select_menu_orig.js +++ b/wqflask/wqflask/static/new/javascript/dataset_select_menu_orig.js @@ -24,6 +24,11 @@ $(function() { console.log("in populate group"); species = $('#species').val(); group_list = this.jdata.groups[species]; + for (_i = 0, _len = group_list.length; _i < (_len - 1); _i++) { + if (group_list[_i][0] == "BXD300"){ + group_list.splice(_i, 1) + } + } redo_dropdown($('#group'), group_list); if ($('#type').length > 0) { //This is to determine if it's the index page or the submit_trait page (which only has species and group selection and no make default option) return populate_type(); diff --git a/wqflask/wqflask/static/new/javascript/network_graph.js b/wqflask/wqflask/static/new/javascript/network_graph.js index 0129bcae..0ecf4743 100644 --- a/wqflask/wqflask/static/new/javascript/network_graph.js +++ b/wqflask/wqflask/static/new/javascript/network_graph.js @@ -82,7 +82,7 @@ window.onload=function() { cy.nodes().qtip({ content: function(){ qtip_content = '' - gn_link = '<b>'+'<a href="http://gn2.genenetwork.org/show_trait?trait_id=' + this.data().id + '&dataset=' + this.data().dataset + '" >'+this.data().id +'</a>'+'</b><br>' + gn_link = '<b>'+'<a href="http://gn2.genenetwork.org/show_trait?trait_id=' + this.data().id.split(":")[0] + '&dataset=' + this.data().id.split(":")[1] + '" >'+this.data().id +'</a>'+'</b><br>' qtip_content += gn_link if (typeof(this.data().geneid) !== 'undefined'){ ncbi_link = '<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=gene&cmd=Retrieve&dopt=Graphics&list_uids=' + this.data().geneid + '" >NCBI<a>'+'<br>' @@ -92,15 +92,8 @@ window.onload=function() { omim_link = '<a href="http://www.ncbi.nlm.nih.gov/omim/' + this.data().omim + '" >OMIM<a>'+'<br>' qtip_content += omim_link } - //qtip_content = gn_link + ncbi_link + omim_link return qtip_content - //return '<b>'+'<a href="http://gn2.genenetwork.org/show_trait?trait_id=' + this.data().id + '&dataset=' + this.data().dataset + '" >'+this.data().id +'<a>'+'</b>' }, - // content: { - // title: '<b>'+'<a href="http://gn2.genenetwork.org/show_trait?trait_id=' + this.target() + '&dataset=' + this.dataset() + '" >'+this.target() +'<a>'+'</b>', - // text: this.target, - // button: true - // }, position: { my: 'top center', at: 'bottom center' @@ -119,7 +112,7 @@ window.onload=function() { correlation_line = '<b>Sample r: ' + this.data().correlation + '</b><br>' p_value_line = 'Sample p(r): ' + this.data().p_value + '<br>' overlap_line = 'Overlap: ' + this.data().overlap + '<br>' - scatter_plot = '<a href="http://gn2-zach.genenetwork.org/corr_scatter_plot?dataset_1=' + this.data().source_dataset + '&dataset_2=' + this.data().target_dataset + '&trait_1=' + this.data().source + '&trait_2=' + this.data().target + '" >View Scatterplot</a>' + scatter_plot = '<a href="http://gn2-zach.genenetwork.org/corr_scatter_plot?dataset_1=' + this.data().source.split(":")[1] + '&dataset_2=' + this.data().target.split(":")[1] + '&trait_1=' + this.data().source.split(":")[0] + '&trait_2=' + this.data().target.split(":")[0] + '" >View Scatterplot</a>' return correlation_line + p_value_line + overlap_line + scatter_plot }, position: { diff --git a/wqflask/wqflask/static/new/javascript/search_results.js b/wqflask/wqflask/static/new/javascript/search_results.js index 40fdff70..2b878087 100644 --- a/wqflask/wqflask/static/new/javascript/search_results.js +++ b/wqflask/wqflask/static/new/javascript/search_results.js @@ -154,11 +154,15 @@ $(function() { } }; + submit_bnw = function() { + trait_data = get_traits_from_table("trait_table", "submit_bnw") + } + export_traits = function() { - trait_data = get_traits_from_table("trait_table") + trait_data = get_traits_from_table("trait_table", "export_csv") }; - get_traits_from_table = function(table_name) { + get_traits_from_table = function(table_name, destination) { trait_table = $('#'+table_name); table_dict = {}; @@ -199,7 +203,11 @@ $(function() { json_table_dict = JSON.stringify(table_dict); $('input[name=export_data]').val(json_table_dict); - $('#export_form').attr('action', '/export_traits_csv'); + if (destination == "export_csv"){ + $('#export_form').attr('action', '/export_traits_csv'); + } else{ + $('#export_form').attr('action', '/submit_bnw'); + } $('#export_form').submit(); }; @@ -208,6 +216,7 @@ $(function() { $("#invert").click(invert); $("#add").click(add); $("#remove").click(remove); + $("#submit_bnw").click(submit_bnw); $("#export_traits").click(export_traits); $('.trait_checkbox, .btn').click(change_buttons); });
\ No newline at end of file diff --git a/wqflask/wqflask/templates/show_trait.html b/wqflask/wqflask/templates/show_trait.html index d41f4dfb..a291baf3 100644 --- a/wqflask/wqflask/templates/show_trait.html +++ b/wqflask/wqflask/templates/show_trait.html @@ -141,7 +141,8 @@ <script type="text/javascript" src="/static/new/javascript/box_plot.js"></script> <script type="text/javascript" src="/static/new/javascript/scatterplot.js"></script> <script type="text/javascript" src="/static/new/javascript/scatter-matrix.js"></script> - <script type="text/javascript" src="/static/new/javascript/draw_probability_plot.js"></script> + <script type="text/javascript" src="/static/new/javascript/draw_probability_plot.js"></script> + <!--<script type="text/javascript" src="/static/new/javascript/plotly_probability_plot.js"></script>--> <script type="text/javascript" src="/static/new/javascript/compare_traits_scatterplot.js"></script> <script language="javascript" type="text/javascript" src="/static/new/javascript/get_covariates_from_collection.js"></script> diff --git a/wqflask/wqflask/templates/show_trait_details.html b/wqflask/wqflask/templates/show_trait_details.html index a0c40c7f..2a62733e 100644 --- a/wqflask/wqflask/templates/show_trait_details.html +++ b/wqflask/wqflask/templates/show_trait_details.html @@ -70,6 +70,10 @@ Genotation </a> + <a href="https://www.gtexportal.org/home/gene/{{ this_trait.symbol }}" title="GTEx Portal"> + GTEx Portal + </a> + {% endif %} </td> </tr> diff --git a/wqflask/wqflask/templates/show_trait_statistics.html b/wqflask/wqflask/templates/show_trait_statistics.html index 48ac468a..aa95b083 100644 --- a/wqflask/wqflask/templates/show_trait_statistics.html +++ b/wqflask/wqflask/templates/show_trait_statistics.html @@ -105,7 +105,6 @@ <option value="{{ group }}">{{ pretty_group }}</option> {% endfor %} </select> - <!--<button type="button" class="btn btn-default" id="down_prob_plot">Export as PNG</button>--> <br> <br> {% endif %} @@ -113,6 +112,7 @@ <div id="prob_plot_container"> <div id="prob_plot_title"></div> <svg></svg> + <!--<div id="prob_plot_div"></div>--> </div> <div id="shapiro_wilk_text"></div> <div> diff --git a/wqflask/wqflask/views.py b/wqflask/wqflask/views.py index 40806450..68e779a1 100644 --- a/wqflask/wqflask/views.py +++ b/wqflask/wqflask/views.py @@ -38,6 +38,7 @@ from wqflask import gsearch from wqflask import update_search_results from wqflask import docs from wqflask import news +from wqflask.submit_bnw import get_bnw_input from base.data_set import DataSet # Used by YAML in marker_regression from wqflask.show_trait import show_trait from wqflask.show_trait import export_trait_data @@ -760,6 +761,11 @@ def corr_scatter_plot_page(): indent=" ") return render_template("corr_scatterplot.html", **template_vars.__dict__) +@app.route("/submit_bnw", methods=('POST',)) +def submit_bnw(): + logger.error(request.url) + template_vars = get_bnw_input(request.form) + return render_template("empty_collection.html", **{'tool':'Correlation Matrix'}) # Todo: Can we simplify this? -Sam def sharing_info_page(): |