Committer: root <root@alexandria.uthsc.edu>

On branch master

1 files changed, 14 insertions, 1 deletions

diff --git a/wqflask/maintenance/dataset/load_phenotypes.py b/wqflask/maintenance/dataset/load_phenotypes.py
index 91bc2d15..274b8593 100644
--- a/wqflask/maintenance/dataset/load_phenotypes.py
+++ b/wqflask/maintenance/dataset/load_phenotypes.py
@@ -1,13 +1,26 @@
 import sys
+import csv
 
 import utilities
 
 def main(argv):
+    #
     config = utilities.get_config(argv[1])
     print "config:"
     for item in config.items('config'):
         print "\t%s" % (str(item))
-
+    #
+    datafile = open(config.get('config', 'datafile'), 'r')
+    phenotypedata = csv.reader(datafile, delimiter='\t', quotechar='"')
+    for row in phenotypedata:
+        #print row
+        pass
+    #
+    metafile = open(config.get('config', 'metafile'), 'r')
+    phenotypemeta = csv.reader(metafile, delimiter='\t', quotechar='"')
+    for row in phenotypemeta:
+        print row[1]
+        
 if __name__ == "__main__":
     print "command line arguments:\n\t%s" % sys.argv
     main(sys.argv)