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authorMunyoki Kilyungi2022-11-30 16:34:58 +0300
committerBonfaceKilz2022-11-30 16:45:25 +0300
commit9c5b1f48914da17c08fc95da858e3d06e41721bb (patch)
tree11a34d7a87b009fd615085d829a0c37cd989596f /wqflask
parenta1552491f5880d4bb94e0b3f8cf52832fa1a842b (diff)
downloadgenenetwork2-9c5b1f48914da17c08fc95da858e3d06e41721bb.tar.gz
Remove check for shortnames/fullnames in probeset metadata query
Some rows in InfoFiles have NULL values thereby causing an exception to be raised. All InfoFiles.DB_Name are unique. * wqflask/base/data_set/dataset.py (DataSet.get_accession_id): Remove shortname/fullname check in query.
Diffstat (limited to 'wqflask')
-rw-r--r--wqflask/base/data_set/dataset.py5
1 files changed, 2 insertions, 3 deletions
diff --git a/wqflask/base/data_set/dataset.py b/wqflask/base/data_set/dataset.py
index dfe09921..d34a3d85 100644
--- a/wqflask/base/data_set/dataset.py
+++ b/wqflask/base/data_set/dataset.py
@@ -94,9 +94,8 @@ class DataSet:
__accession_id_dict, = itertools.islice(
query_sql(conn,
("SELECT InfoFiles.GN_AccesionId AS accession_id "
- f"FROM InfoFiles WHERE InfoFiles.InfoPageName = '{conn.escape_string(self.name).decode()}' "
- f"AND InfoFiles.DB_Name = '{conn.escape_string(self.fullname).decode()}' "
- f"OR InfoFiles.DB_Name = '{conn.escape_string(self.shortname).decode()}'")
+ "FROM InfoFiles WHERE InfoFiles.InfoPageName = "
+ f"'{conn.escape_string(self.name).decode()}'")
), 1)
else: # The Value passed is not present
raise LookupError