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| author | BonfaceKilz | 2020-10-08 22:37:07 +0300 |
|---|---|---|
| committer | BonfaceKilz | 2020-10-09 01:04:47 +0300 |
| commit | 65846e5b05841b7c31a37298b49b99bb77d48a31 (patch) | |
| tree | 78df77ff6143ef31e9560aae3fed48b3b6d7f5ae /wqflask | |
| parent | ef11f5e40ec0b8ef90a00b9d98d81cca2ff5d8d9 (diff) | |
| download | genenetwork2-65846e5b05841b7c31a37298b49b99bb77d48a31.tar.gz | |
Update base64 conversion
* wqflask/wqflask/wgcna/wgcna_analysis.py
(WGCNA.render_image): Use Python3's base64 library from the stdlib to
perform conversion.
* wqflask/wqflask/ctl/ctl_analysis.py (CTL.loadImage): Ditto.
Diffstat (limited to 'wqflask')
| -rw-r--r-- | wqflask/wqflask/ctl/ctl_analysis.py | 2 | ||||
| -rw-r--r-- | wqflask/wqflask/wgcna/wgcna_analysis.py | 3 |
2 files changed, 3 insertions, 2 deletions
diff --git a/wqflask/wqflask/ctl/ctl_analysis.py b/wqflask/wqflask/ctl/ctl_analysis.py index e58a7b87..2a2124ca 100644 --- a/wqflask/wqflask/ctl/ctl_analysis.py +++ b/wqflask/wqflask/ctl/ctl_analysis.py @@ -194,7 +194,7 @@ class CTL(object): def loadImage(self, path, name): imgfile = open(self.results[path], 'rb') imgdata = imgfile.read() - imgB64 = imgdata.encode("base64") + imgB64 = base64.b64encode(imgdata) bytesarray = array.array('B', imgB64) self.results[name] = bytesarray diff --git a/wqflask/wqflask/wgcna/wgcna_analysis.py b/wqflask/wqflask/wgcna/wgcna_analysis.py index 0afe7e82..35fb3ec0 100644 --- a/wqflask/wqflask/wgcna/wgcna_analysis.py +++ b/wqflask/wqflask/wgcna/wgcna_analysis.py @@ -1,5 +1,6 @@ # WGCNA analysis for GN2 # Author / Maintainer: Danny Arends <Danny.Arends@gmail.com> +import base64 import sys import rpy2.robjects as ro # R Objects import rpy2.rinterface as ri @@ -163,8 +164,8 @@ class WGCNA(object): print(("pre-loading imgage results:", self.results['imgloc'])) imgfile = open(self.results['imgloc'], 'rb') imgdata = imgfile.read() - imgB64 = imgdata.encode("base64") bytesarray = array.array('B', imgB64) + imgB64 = base64.b64encode(imgdata) self.results['imgdata'] = bytesarray def process_results(self, results): |