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| author | Pjotr Prins | 2015-04-17 13:12:44 +0000 |
|---|---|---|
| committer | Pjotr Prins | 2015-04-17 13:12:44 +0000 |
| commit | a86c0d8a0b942a08ff822f2f1fb026857346338f (patch) | |
| tree | 2cb08dc72c68c5f1f6bbf427165ead7b2f3059a6 /wqflask | |
| parent | abbd30c0f73184ef22a0501c8e94436242b6b669 (diff) | |
| parent | bb8e466e00c622f7b28209378c1871a1d8469572 (diff) | |
| download | genenetwork2-a86c0d8a0b942a08ff822f2f1fb026857346338f.tar.gz | |
Merge branch 'lmm' of github.com:pjotrp/genenetwork2 into lmm
Diffstat (limited to 'wqflask')
| -rw-r--r-- | wqflask/wqflask/my_pylmm/pyLMM/convertlmm.py | 10 |
1 files changed, 8 insertions, 2 deletions
diff --git a/wqflask/wqflask/my_pylmm/pyLMM/convertlmm.py b/wqflask/wqflask/my_pylmm/pyLMM/convertlmm.py index 3b6b5d70..4312fed0 100644 --- a/wqflask/wqflask/my_pylmm/pyLMM/convertlmm.py +++ b/wqflask/wqflask/my_pylmm/pyLMM/convertlmm.py @@ -1,5 +1,5 @@ -# This is a converter for common LMM formats, so as to keep complexity -# outside the main routines. +# This is a converter for common LMM formats, so as to keep file +# reader complexity outside the main routines. # Copyright (C) 2015 Pjotr Prins (pjotr.prins@thebird.nl) # @@ -31,6 +31,12 @@ python convertlmm.py [--plink] [--prefix out_basename] [--kinship kfile] [--phen Convert files for runlmm.py processing. Writes to stdout by default. try --help for more information + +Examples: + + python ./my_pylmm/pyLMM/convertlmm.py --plink --pheno data/test_snps.132k.clean.noX.fake.phenos > test.pheno + + python ./my_pylmm/pyLMM/convertlmm.py --plink --pheno data/test_snps.132k.clean.noX.fake.phenos --geno data/test_snps.132k.clean.noX > test.geno """ # if len(args) == 0: |