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| author | zsloan | 2022-10-11 21:26:05 +0000 |
|---|---|---|
| committer | zsloan | 2022-10-11 21:26:05 +0000 |
| commit | 1d37d4514e2f60e16be23aa70c03948158e7b383 (patch) | |
| tree | f5caf8fb1bcdb48092a2496e9b0088739f8d76bb /wqflask | |
| parent | fa58b9efe0216e26822da4c2872bdb5b3eeb5b0c (diff) | |
| download | genenetwork2-1d37d4514e2f60e16be23aa70c03948158e7b383.tar.gz | |
Only compute Lit/Tissue corr when main trait's dataset is of type ProbeSet
Diffstat (limited to 'wqflask')
| -rw-r--r-- | wqflask/wqflask/correlation/rust_correlation.py | 4 |
1 files changed, 1 insertions, 3 deletions
diff --git a/wqflask/wqflask/correlation/rust_correlation.py b/wqflask/wqflask/correlation/rust_correlation.py index aee08cba..3330cce9 100644 --- a/wqflask/wqflask/correlation/rust_correlation.py +++ b/wqflask/wqflask/correlation/rust_correlation.py @@ -348,7 +348,7 @@ def compute_correlation_rust( if should_compute_all: - if corr_type == "sample": + if corr_type == "sample" and this_dataset.type == "ProbeSet": top_a = compute_top_n_tissue( target_dataset, this_trait, results, method) @@ -369,8 +369,6 @@ def compute_correlation_rust( top_a = compute_top_n_sample( start_vars, target_dataset, list(results.keys())) - top_b = compute_top_n_lit(results, target_dataset, this_trait) - return { "correlation_results": merge_results( results, top_a, top_b), |