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authorFrederick Muriuki Muriithi2022-09-09 06:08:53 +0300
committerFrederick Muriuki Muriithi2022-09-09 06:08:53 +0300
commit1055679028cdd24f845aac80dd4cde22a17a1e25 (patch)
tree754683f5be9b50995ff078d5c75c5eefef9ebebb /wqflask
parent209a41444682def27bcdb626e77c27262539b5f0 (diff)
downloadgenenetwork2-1055679028cdd24f845aac80dd4cde22a17a1e25.tar.gz
Replace `g.db.execute` with `cursor.execute`
Diffstat (limited to 'wqflask')
-rw-r--r--wqflask/base/data_set.py46
1 files changed, 24 insertions, 22 deletions
diff --git a/wqflask/base/data_set.py b/wqflask/base/data_set.py
index cd626526..4d708e59 100644
--- a/wqflask/base/data_set.py
+++ b/wqflask/base/data_set.py
@@ -479,28 +479,30 @@ class DatasetGroup:
def datasets(group_name, this_group=None):
key = "group_dataset_menu:v2:" + group_name
dataset_menu = []
- the_results = g.db.execute('''
- (SELECT '#PublishFreeze',PublishFreeze.FullName,PublishFreeze.Name
- FROM PublishFreeze,InbredSet
- WHERE PublishFreeze.InbredSetId = InbredSet.Id
- and InbredSet.Name = '%s'
- ORDER BY PublishFreeze.Id ASC)
- UNION
- (SELECT '#GenoFreeze',GenoFreeze.FullName,GenoFreeze.Name
- FROM GenoFreeze, InbredSet
- WHERE GenoFreeze.InbredSetId = InbredSet.Id
- and InbredSet.Name = '%s')
- UNION
- (SELECT Tissue.Name, ProbeSetFreeze.FullName,ProbeSetFreeze.Name
- FROM ProbeSetFreeze, ProbeFreeze, InbredSet, Tissue
- WHERE ProbeSetFreeze.ProbeFreezeId = ProbeFreeze.Id
- and ProbeFreeze.TissueId = Tissue.Id
- and ProbeFreeze.InbredSetId = InbredSet.Id
- and InbredSet.Name like %s
- ORDER BY Tissue.Name, ProbeSetFreeze.OrderList DESC)
- ''' % (group_name,
- group_name,
- "'" + group_name + "'")).fetchall()
+ with database_connection() as conn, conn.cursor() as cursor:
+ cursor.execute('''
+ (SELECT '#PublishFreeze',PublishFreeze.FullName,PublishFreeze.Name
+ FROM PublishFreeze,InbredSet
+ WHERE PublishFreeze.InbredSetId = InbredSet.Id
+ and InbredSet.Name = '%s'
+ ORDER BY PublishFreeze.Id ASC)
+ UNION
+ (SELECT '#GenoFreeze',GenoFreeze.FullName,GenoFreeze.Name
+ FROM GenoFreeze, InbredSet
+ WHERE GenoFreeze.InbredSetId = InbredSet.Id
+ and InbredSet.Name = '%s')
+ UNION
+ (SELECT Tissue.Name, ProbeSetFreeze.FullName,ProbeSetFreeze.Name
+ FROM ProbeSetFreeze, ProbeFreeze, InbredSet, Tissue
+ WHERE ProbeSetFreeze.ProbeFreezeId = ProbeFreeze.Id
+ and ProbeFreeze.TissueId = Tissue.Id
+ and ProbeFreeze.InbredSetId = InbredSet.Id
+ and InbredSet.Name like %s
+ ORDER BY Tissue.Name, ProbeSetFreeze.OrderList DESC)
+ ''' % (group_name,
+ group_name,
+ "'" + group_name + "'"))
+ the_results = cursor.fetchall()
sorted_results = sorted(the_results, key=lambda kv: kv[0])