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authorMunyoki Kilyungi2022-09-07 12:47:45 +0300
committerBonfaceKilz2022-09-08 14:26:19 +0300
commit07c0d05abbe378fd93fe5f7ddaf8922546d7ba22 (patch)
tree9dceb036397b63a5c510b4e284fc74ddd051087c /wqflask
parentb69e6944b45ed1c59e43c7b75571777711b8a30d (diff)
downloadgenenetwork2-07c0d05abbe378fd93fe5f7ddaf8922546d7ba22.tar.gz
Removing object notation after a cursor fetch
* wqflask/wqflask/show_trait/SampleList.py (SampleList.get_attributes): Remove object notation. (SampleList.get_extra_attribute_values): Ditto.
Diffstat (limited to 'wqflask')
-rw-r--r--wqflask/wqflask/show_trait/SampleList.py11
1 files changed, 6 insertions, 5 deletions
diff --git a/wqflask/wqflask/show_trait/SampleList.py b/wqflask/wqflask/show_trait/SampleList.py
index cc6b8e23..dc45a954 100644
--- a/wqflask/wqflask/show_trait/SampleList.py
+++ b/wqflask/wqflask/show_trait/SampleList.py
@@ -135,7 +135,7 @@ class SampleList:
)
self.attributes = {}
for attr, values in itertools.groupby(
- cursor.fetchall(), lambda row: (row.Id, row.Name, row.Description)
+ cursor.fetchall(), lambda row: (row[0], row[1], row[2])
):
key, name, description = attr
self.attributes[key] = Bunch()
@@ -176,14 +176,15 @@ class SampleList:
)
for sample_name, items in itertools.groupby(
- cursor.fetchall(), lambda row: row.SampleName
+ cursor.fetchall(), lambda row: row[0]
):
attribute_values = {}
# Make a list of attr IDs without values (that have values for other samples)
valueless_attr_ids = [self.attributes[key].id for key in self.attributes.keys()]
for item in items:
- valueless_attr_ids.remove(item.Id)
- attribute_value = item.Value
+ sample_name, _id, value = item
+ valueless_attr_ids.remove(_id)
+ attribute_value = value
# If it's an int, turn it into one for sorting
# (for example, 101 would be lower than 80 if
@@ -193,7 +194,7 @@ class SampleList:
except ValueError:
pass
- attribute_values[str(item.Id)] = attribute_value
+ attribute_values[str(_id)] = attribute_value
for attr_id in valueless_attr_ids:
attribute_values[str(attr_id)] = ""