Fixed PDF links in reference to point to the PDFs in GN1

1 files changed, 46 insertions, 46 deletions

diff --git a/wqflask/wqflask/templates/reference.html b/wqflask/wqflask/templates/reference.html
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+++ b/wqflask/wqflask/templates/reference.html
@@ -51,14 +51,14 @@
 
 <LI> Mulligan MK, Mozhui K, Prins P, Williams RW (<A HREF="https://ncbi.nlm.nih.gov/pubmed/27933521" target="_blank" class="fwn">2017</A>) GeneNetwork: A Toolbox for Systems Genetics. In <I>Systems Genetics</I>, Methods in Molecular Biology 1488:75-120
 [An updated primer in using GeneNetwork for molecular analysis of mouse and human cohorts.] 
-<SMALL><A HREF="/images/upload/Mulligan_How_To_Use_GeneNetwork_2017_v1.pdf" target="_blank" class="fwn">PDF version</A>
+<SMALL><A HREF="http://genenetwork.org/images/upload/Mulligan_How_To_Use_GeneNetwork_2017_v1.pdf" target="_blank" class="fwn">PDF version</A>
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-<LI> Williams RW, Williams EG (<A HREF="/images/upload/Williams_ResourcesSystemsGenetics_MethodsMolBio_2016.pdf" target="_blank" class="fwn"" target="_blank" class="fwn">2017</A>) Resources for Systems Genetics. In <I>Systems Genetics</I>, Methods in Molecular Biology 1488:3-29.
+<LI> Williams RW, Williams EG (<A HREF="http://genenetwork.org/images/upload/Williams_ResourcesSystemsGenetics_MethodsMolBio_2016.pdf" target="_blank" class="fwn"" target="_blank" class="fwn">2017</A>) Resources for Systems Genetics. In <I>Systems Genetics</I>, Methods in Molecular Biology 1488:3-29.
 [This review is intended to help you when making the hard choices about types of resources to use in system genetic studies. The short answer: embrace diversity in your resources. The computational barriers to joint analysis are now minimal.] 
-<SMALL><A HREF="/images/upload/Williams_ResourcesSystemsGenetics_MethodsMolBio_2016.pdf" target="_blank" class="fwn">PDF version</A>
+<SMALL><A HREF="http://genenetwork.org/images/upload/Williams_ResourcesSystemsGenetics_MethodsMolBio_2016.pdf" target="_blank" class="fwn">PDF version</A>
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@@ -73,7 +73,7 @@
 
 <LI>
 Pinelli M, Carissimo A, Cutillo L, Lai CH, Mutarelli M, Moretti MN, Singh MV, Karali M, Carrella D, Pizzo M, Russo F, Ferrari S, Ponzin D, Angelini C, Banfi S, di Bernardo D  (<A HREF="https://ncbi.nlm.nih.gov/pubmed/27235414" target="_blank" class="fwn">2016</A>) An atlas of gene expression and gene co-regulation in the human retina.Nucleic Acids Res. 2016 Jul 8;44(12):5773-84
-<SMALL><A HREF="http://retina.tigem.it" target="_blank" class="fwn">RETINA database</A>, and see the <A HREF="/images/upload/Pinelli_diBerardo_2016_AtlasHumanRetina.pdf" target="_blank" class="fwn">PDF</A>. These data are now in GeneNetwork (Species = Human, Group = Retina).
+<SMALL><A HREF="http://retina.tigem.it" target="_blank" class="fwn">RETINA database</A>, and see the <A HREF="http://genenetwork.org/images/upload/Pinelli_diBerardo_2016_AtlasHumanRetina.pdf" target="_blank" class="fwn">PDF</A>. These data are now in GeneNetwork (Species = Human, Group = Retina).
 </SMALL>
 
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@@ -82,7 +82,7 @@ Pinelli M, Carissimo A, Cutillo L, Lai CH, Mutarelli M, Moretti MN, Singh MV, Ka
 
 <LI>
 Williams EG, Wu Y, Pooja J, Dubuis S, Blattmann P, Argmann CA, Houten SM, Amariuta T, Wolski W, Zamboni N, Aebersold R, Auwerx J (<A HREF="https://ncbi.nlm.nih.gov/pubmed/27284200" target="_blank" class="fwn">2016</A>) Systems proteomics and trans-omic integration illuminate new mechanisms in mitochondrial function. Science 352(6291):aad0189
-<SMALL><A HREF="http://science.sciencemag.org/content/352/6291/aad0189.full" target="_blank" class="fwn">HTML version</A>, <A HREF="/images/upload/WilliamsEG_Auwerx_Systems_Science-2016.pdf " target="_blank" class="fwn">PDF</A>
+<SMALL><A HREF="http://science.sciencemag.org/content/352/6291/aad0189.full" target="_blank" class="fwn">HTML version</A>, <A HREF="http://genenetwork.org/images/upload/WilliamsEG_Auwerx_Systems_Science-2016.pdf " target="_blank" class="fwn">PDF</A>
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@@ -97,7 +97,7 @@ Sloan Z, Arends D, Broman KW, Centeno A, Furlotte N, Nijveen H, Yan L, Zhou X, W
 <BR>
 
 <LI>Alam G, Miller DB, O'Callaghan JP, Lu L, Williams RW, Jones BC  (<A HREF="https://ncbi.nlm.nih.gov/pubmed/27182044" target="_blank" class="fwn">2016</A>) MPTP neurotoxicity is highly concordant between the sexes among BXD recombinant inbred mouse strains. Neurotoxicology in press
-<SMALL><A HREF="/images/upload/Alam_Jones_MPTP_Neurotox_2016.pdf" target="_blank" class="fwn">PDF version</A>
+<SMALL><A HREF="http://genenetwork.org/images/upload/Alam_Jones_MPTP_Neurotox_2016.pdf" target="_blank" class="fwn">PDF version</A>
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@@ -111,9 +111,9 @@ Sloan Z, Arends D, Broman KW, Centeno A, Furlotte N, Nijveen H, Yan L, Zhou X, W
 <LI> Wang X, Pandey AK, Mulligan MK, Williams EG, Mozhui K, Li Z, Jovaisaite V, Quarles LD, Xiao Z, Huang J, Capra JA, Chen Z, Taylor WL, Bastarache L, Niu X, Pollard KS, Ciobanu DC, Reznik AO, Tishkov AV, Zhulin IB, Peng J, Nelson SF, Denny JC, Auwerx J, Lu L, Williams RW (<A HREF="https://ncbi.nlm.nih.gov/pubmed/26833085" target="_blank" class="fwn">2016</A>). Joint mouse-human phenome-wide association to test gene function and disease risk. Nature Communications 7:10464 
 [Best reference on the BXD family of strains and the wide range of phenotypes that have been generated over the past 40 years.] 
 
-<SMALL><A HREF="/images/upload/Wang_PheWas_NatComm_2016.pdf" target="_blank" class="fwn">PDF version</A> and the
+<SMALL><A HREF="http://genenetwork.org/images/upload/Wang_PheWas_NatComm_2016.pdf" target="_blank" class="fwn">PDF version</A> and the
 
-<A HREF="/images/upload/Wang_SupplementalTables_NatComm_2016.xlsx" target="_blank" class="fwn">Supplementary Tables in one Excel file</A>
+<A HREF="http://genenetwork.org/images/upload/Wang_SupplementalTables_NatComm_2016.xlsx" target="_blank" class="fwn">Supplementary Tables in one Excel file</A>
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@@ -160,7 +160,7 @@ Ye R, Carneiro AM, Airey D, Sanders-Bush E, Williams RW, Lu L, Wang J, Zhang B,
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 <LI>
-Houtkooper RH, Mouchiroud L, Ryu D, Moullan N, Katsyuba E, Knott G,  Williams RW,  Auwerx J (<A HREF="https://ncbi.nlm.nih.gov/pubmed/23698443" target="_blank" class="fwn">2013</A>) Mitonuclear protein imbalance as a conserved longevity mechanism. Nature 497:451-457  <A HREF="/images/upload/Houtkooper_Williams_Auwerx_Nature_2013.pdf" target="_blank" class="fwn">PDF version</A>
+Houtkooper RH, Mouchiroud L, Ryu D, Moullan N, Katsyuba E, Knott G,  Williams RW,  Auwerx J (<A HREF="https://ncbi.nlm.nih.gov/pubmed/23698443" target="_blank" class="fwn">2013</A>) Mitonuclear protein imbalance as a conserved longevity mechanism. Nature 497:451-457  <A HREF="http://genenetwork.org/images/upload/Houtkooper_Williams_Auwerx_Nature_2013.pdf" target="_blank" class="fwn">PDF version</A>
 
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@@ -192,15 +192,15 @@ Houtkooper RH, Mouchiroud L, Ryu D, Moullan N, Katsyuba E, Knott G,  Williams RW
 
 <LI> Mulligan MK, Mozhui K, Prins P, Williams RW (<A HREF="https://ncbi.nlm.nih.gov/pubmed/26092713" target="_blank" class="fwn">2016</A>) GeneNetwork – A toolbox for systems genetics. In <I>Systems Genetics</I>, Methods in Molecular Biology; Schughart K, Williams RW eds.; Humana Press, in press
 [This is a currently the most comprehensive protocol and guide (20 Mb) for GeneNetwork.] 
-<SMALL><A HREF="/images/upload/Mulligan_How_To_Use_GeneNetwork_2016_v1.pdf" target="_blank" class="fwn">PDF version</A></SMALL>
+<SMALL><A HREF="http://genenetwork.org/images/upload/Mulligan_How_To_Use_GeneNetwork_2016_v1.pdf" target="_blank" class="fwn">PDF version</A></SMALL>
 				
 
 <LI>
 Williams RW, Mulligan MK (<A HREF="https://ncbi.nlm.nih.gov/pubmed/23195314" target="_blank" class="fwn">2012</A>) Genetic and molecular network analysis of behavior. Int Rev Neurobiol. 104:135-57. [Explains the  use of GeneNetwork in behavioral neurogenetics] 
-<SMALL><A HREF="/images/upload/Williams_Mulligan_Bioinformatics of Brain Short 2012.pdf" target="_blank" class="fwn">PDF version</A>
+<SMALL><A HREF="http://genenetwork.org/images/upload/Williams_Mulligan_Bioinformatics of Brain Short 2012.pdf" target="_blank" class="fwn">PDF version</A>
 </SMALL>
 
-<LI> Williams EG, Auwerx J (<A HREF="https://ncbi.nlm.nih.gov/pubmed/26140590" target="_blank" class="fwn">2015</A>) The convergence of systems and reductionist approaches in complex trait analysis. Cell 162:23-32. [Research into the genetic and environmental factors behind complex trait variation has traditionally been segregated into distinct scientific camps. The reductionist approach aims to decrypt phenotypic variability bit by bit, founded on the underlying hypothesis that genome-to-phenome relations are largely constructed from the additive effects of their molecular players. In contrast, the systems approach aims to examine large-scale interactions of many components simultaneously, on the premise that interactions in gene networks can be both linear and non-linear. Both approaches are complementary, and they are becoming increasingly intertwined due to developments in gene editing tools, omics technologies, and population resources. Together, these strategies are beginning to drive the next era in complex trait research, paving the way to improve agriculture and toward more personalized medicine.]  <SMALL><A HREF="/images/upload/WilliamsEG_Auwerx_Cell2015.pdf" target="_blank" class="fwn">PDF version</A>
+<LI> Williams EG, Auwerx J (<A HREF="https://ncbi.nlm.nih.gov/pubmed/26140590" target="_blank" class="fwn">2015</A>) The convergence of systems and reductionist approaches in complex trait analysis. Cell 162:23-32. [Research into the genetic and environmental factors behind complex trait variation has traditionally been segregated into distinct scientific camps. The reductionist approach aims to decrypt phenotypic variability bit by bit, founded on the underlying hypothesis that genome-to-phenome relations are largely constructed from the additive effects of their molecular players. In contrast, the systems approach aims to examine large-scale interactions of many components simultaneously, on the premise that interactions in gene networks can be both linear and non-linear. Both approaches are complementary, and they are becoming increasingly intertwined due to developments in gene editing tools, omics technologies, and population resources. Together, these strategies are beginning to drive the next era in complex trait research, paving the way to improve agriculture and toward more personalized medicine.]  <SMALL><A HREF="http://genenetwork.org/images/upload/WilliamsEG_Auwerx_Cell2015.pdf" target="_blank" class="fwn">PDF version</A>
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 <LI>
@@ -253,7 +253,7 @@ Manly KF, Wang J, Williams RW (<A HREF="http://genomebiology.com/2005/6/3/R27" c
 <LI>
 Manly K, Williams RW (2001)  WEBQTL—WWW service for mapping quantitative trait loci. International Mouse Genome Conference 15: 74. [First published abstract on WebQTL, presented Oct 2001, Edinburgh; also see <A HREF="http://www.complextrait.org/archive/2002/HTML/manly.html" class="fwn" target="_blank">2002</A> CTC abstract]
 <LI>
-Taylor BA, Heiniger HJ, Meier H (<A HREf="http://www.ncbi.nlm.nih.gov/pubmed/4719448">1973</A>) Genetic analysis of resistance to cadmium-induced teticular damage in mice. Proc Soc Exp Biol Med 143:629-33  [This is one of the first full paper on the use of recombinant inbred strains in biomedical research and the first paper to use BXD lines of mice.  The <I>cdm</I> locus that they mapped to distal Chr 3 was subsequently defined as the <I>Slc38a8</I> metal testicular metal ion transporter. <A HREF="/images/upload/Taylor_1973.pdf"> Full text</A>
+Taylor BA, Heiniger HJ, Meier H (<A HREf="http://www.ncbi.nlm.nih.gov/pubmed/4719448">1973</A>) Genetic analysis of resistance to cadmium-induced teticular damage in mice. Proc Soc Exp Biol Med 143:629-33  [This is one of the first full paper on the use of recombinant inbred strains in biomedical research and the first paper to use BXD lines of mice.  The <I>cdm</I> locus that they mapped to distal Chr 3 was subsequently defined as the <I>Slc38a8</I> metal testicular metal ion transporter. <A HREF="http://genenetwork.org/images/upload/Taylor_1973.pdf"> Full text</A>
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 Webster JA, Gibbs JR, Clarke J, Ray M, Zhang W, Holmans P, Rohrer K, Zhao A, Marlowe L, Kaleem M, McCorquodale DS 3rd, Cuello C, Leung D, Bryden L, Nath P, Zismann VL, Joshipura K, Huentelman MJ, Hu-Lince D, Coon KD, Craig DW, Pearson JV; NACC-Neuropathology Group, Heward CB, Reiman EM, Stephan D, Hardy J, Myers AJ (<A HREF="http://www.ncbi.nlm.nih.gov/pubmed/19361613" class="fwn" target="_blank">2009</A>) Genetic control of human brain transcript expression in Alzheimer disease. Am J Hum Genet 84:445-58.  [Please review and cite this article if you have used the HUMAN data set by Myers and colleagues in GeneNetwork.]
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@@ -337,7 +337,7 @@ Ashbrook DG, Gini B, Hager R (<A HREF="https://ncbi.nlm.nih.gov/pubmed/26701914"
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 Ashbrook DG, Williams RW, Lu L, Hager R (<A HREF="https://ncbi.nlm.nih.gov/pubmed/26190982" target="_blank" class="fwn">2015</A>) A cross-species genetic analysis identifies candidate genes for mouse anxiety and human bipolar disorder. Frontiers in Behavioral Neuroscience 9:171
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-Chaum E, Winborn CS, Bhattacharya S (<A HREF="https://ncbi.nlm.nih.gov/pubmed/25963977" target="_blank" class="fwn">2015</A>) Genomic regulation of senescence and innate immunity signaling in the retinal pigment epithelium.  Mammalian Genome 26:210-221 <A HREF="/images/upload/ChaumMammGenome2015.pdf"> Full text</A>
+Chaum E, Winborn CS, Bhattacharya S (<A HREF="https://ncbi.nlm.nih.gov/pubmed/25963977" target="_blank" class="fwn">2015</A>) Genomic regulation of senescence and innate immunity signaling in the retinal pigment epithelium.  Mammalian Genome 26:210-221 <A HREF="http://genenetwork.org/images/upload/ChaumMammGenome2015.pdf"> Full text</A>
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 Cheng Q, Seltzer Z, Sima C, Lakschevitz FS, Glogauer M (<A HREF="https://ncbi.nlm.nih.gov/pubmed/25608512" target="_blank" class="fwn">2015</A>) Quantitative trait loci and candidate genes for neutrophil recruitment in sterile inflammation mapped in AXB-BXA recombinant inbred mice. PLoS One 10:e0124117
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@@ -359,7 +359,7 @@ Shea CJ, Carhuatanta KA, Wagner J, Bechmann N, Moore R, Herman JP, Jankord R  (<
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 Xue Y, Li J, Yan L, Lu L, Liao FF (<A HREF="https://ncbi.nlm.nih.gov/pubmed/26092713" target="_blank" class="fwn">2015</A>) Genetic variability to diet-induced hippocampal dysfunction in BXD recombinant inbred (RI) mouse strains. Behav Brain Res 292:83-94
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-Williams EG, Auwerx J (<A HREF="https://ncbi.nlm.nih.gov/pubmed/26140590" target="_blank" class="fwn">2015</A>) The convergence of systems and reductionist approaches in complex trait analysis. Cell 162:23-32. <SMALL><A HREF="/images/upload/WilliamsEG_Auwerx_Cell2015.pdf" target="_blank" class="fwn">PDF version</A></SMALL>
+Williams EG, Auwerx J (<A HREF="https://ncbi.nlm.nih.gov/pubmed/26140590" target="_blank" class="fwn">2015</A>) The convergence of systems and reductionist approaches in complex trait analysis. Cell 162:23-32. <SMALL><A HREF="http://genenetwork.org/images/upload/WilliamsEG_Auwerx_Cell2015.pdf" target="_blank" class="fwn">PDF version</A></SMALL>
 
  
 </OL>
@@ -413,7 +413,7 @@ Keeley PW, Zhou C, Lu L, Williams RW, Melmed S, Reese BE (<A HREF="https://ncbi.
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 Kweon KH, Lee CR, Jung SJ, Ban EJ, Kang SW, Jeong JJ, Nam KH, Jo YS, Lee J, Chung WY (<A HREF="https://ncbi.nlm.nih.gov/pubmed/25109285" target="_blank" class="fwn">2014</A>) Sirt1 induction confers resistance to etoposide-induced genotoxic apoptosis in thyroid cancers. Int J Oncol 45:2065-2075
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-Loos M, Mueller T, Gouwenberg Y, Wijnands R, van der Loo RJ, Birchmeier C, Smit AB, Spijker S (<A HREF="/images/upload/Loos_Spijker_Nrg3Impulsive_BioPsch_2014.pdf" target="_blank" class="fwn">2014</A>) Neuregulin-3 in the mouse medial prefrontal cortex regulates impulsive action. Biol Psychiatry 76:648-655
+Loos M, Mueller T, Gouwenberg Y, Wijnands R, van der Loo RJ, Birchmeier C, Smit AB, Spijker S (<A HREF="http://genenetwork.org/images/upload/Loos_Spijker_Nrg3Impulsive_BioPsch_2014.pdf" target="_blank" class="fwn">2014</A>) Neuregulin-3 in the mouse medial prefrontal cortex regulates impulsive action. Biol Psychiatry 76:648-655
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 Lotan A, Fenckova M, Fralten J, Alttoa A, Dixson L, Williams RW, van der Voet M (<A HREF="https://ncbi.nlm.nih.gov/pubmed/25414627" target="_blank" class="fwn">2014</A>) Neuroinformatic analyses of common and distinct genetic components associate with major neuropsychiatric disorders. Frontiers in Neuroscience 8:331
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@@ -481,7 +481,7 @@ Ye R, Carneiro AM, Airey D, Sanders-Bush E, Williams RW, Lu L, Wang J, Zhang B,
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 Bhandari P, Hill JS, Farris SP, Costin B, Martin I, Chan CL, Alaimo JT, Bettinger JC, Davies AG, Miles MF, Grotewiel M (<A HREF="https://ncbi.nlm.nih.gov/pubmed/22239914" target="_blank" class="fwn">2013</A>) Chloride intracellular channels modulate acute ethanol behaviors in Drosophila, Caenorhabditis elegans and mice. Genes, Brain & Behavior 11:387-97
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-Cheng Y, Gaughan J, Midic U, Han Z, Liang CG, Patel BG, Latham KE (<A HREF="http://www.genetics.org/content/193/3/877.long" target="_blank" class="fwn">2013</A>)  Systems genetics implicates cytoskeletal genes in oocyte control of cloned embryo quality. Genetics 193:877-896  <A HREF="/images/upload/Cheng_Latham_2013.pdf" target="_blank" class="fwn">PDF version</A>
+Cheng Y, Gaughan J, Midic U, Han Z, Liang CG, Patel BG, Latham KE (<A HREF="http://www.genetics.org/content/193/3/877.long" target="_blank" class="fwn">2013</A>)  Systems genetics implicates cytoskeletal genes in oocyte control of cloned embryo quality. Genetics 193:877-896  <A HREF="http://genenetwork.org/images/upload/Cheng_Latham_2013.pdf" target="_blank" class="fwn">PDF version</A>
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 Dogan A, Lasch P, Neuschl C, Millrose MK, Alberts R, Schughart K, Naumann D, Brockmann GA. (<A HREF="https://ncbi.nlm.nih.gov/pubmed/23758785" target="_blank" class="fwn">2013</A>) ATR-FTIR spectroscopy reveals genomic loci regulating the tissue response in high fat diet fed BXD recombinant inbred mouse strains. BMC Genomics 14:386
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@@ -489,7 +489,7 @@ DuBose CS, Chesler EJ, Goldowitz D, Hamre KM (<A HREF="https://ncbi.nlm.nih.gov/
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 Farris SP, Miles MF (<A HREF="http://www.plosone.org/article/info%3Adoi%2F10.1371%2Fjournal.pone.0082435" target="_blank" class="fwn">2013</A>) Fyn-dependent gene networks in acute ethanol sensitivity. PLoS One 8:e82435
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-Houtkooper RH, Mouchiroud L, Ryu D, Moullan N, Katsyuba E, Knott G,  Williams RW,  Auwerx J (<A HREF="https://ncbi.nlm.nih.gov/pubmed/23698443" target="_blank" class="fwn">2013</A>) Mitonuclear protein imbalance as a conserved longevity mechanism. Nature 497:451-457  <A HREF="/images/upload/Houtkooper_Williams_Auwerx_Nature_2013.pdf" target="_blank" class="fwn">PDF version</A>
+Houtkooper RH, Mouchiroud L, Ryu D, Moullan N, Katsyuba E, Knott G,  Williams RW,  Auwerx J (<A HREF="https://ncbi.nlm.nih.gov/pubmed/23698443" target="_blank" class="fwn">2013</A>) Mitonuclear protein imbalance as a conserved longevity mechanism. Nature 497:451-457  <A HREF="http://genenetwork.org/images/upload/Houtkooper_Williams_Auwerx_Nature_2013.pdf" target="_blank" class="fwn">PDF version</A>
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 Huang Y, Wang L, Bennett B, Williams RW, Wang YJ, Gu WK, Jiao Y (<A HREF="https://ncbi.nlm.nih.gov/pubmed/24085430" target="_blank" class="fwn">2013</A>) Potential role of Atp5g3 in epigenetic regulation of alcohol preference or obesity from a mouse genomic perspective. Genet Mol Res 12:3662-3674
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@@ -553,7 +553,7 @@ Boughter JD Jr, Mulligan MK, St John SJ, Tokita K, Lu L, Heck DH, Williams RW (<
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 Bubier JA, Chesler EJ (<A HREF="https://ncbi.nlm.nih.gov/pubmed/22422471" target="_blank" class="fwn">2012</A>) Accelerating discovery for complex neurological and behavioral disorders through systems genetics and integrative genomics in the laboratory mouse. Neurotherapeutics 9:338-348 <A href="http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3325414/" target="_blank" class="fwn"><I>Full Text version</I> </A>
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-Bryant CD, Kole LA, Guido MA, Sokoloff G, Palmer AA  (<A HREF="https://ncbi.nlm.nih.gov/pubmed/22675444" target="_blank" class="fwn">2012</A>) Congenic dissection of a major QTL for methamphetamine sensitivity implicates epistasis. Genes, Brain and Behavior 11:623-632  <A href="/images/upload/Bryant_Palmer2012.pdf" target="_blank" class="fwn"><I>PDF version</I> </A>
+Bryant CD, Kole LA, Guido MA, Sokoloff G, Palmer AA  (<A HREF="https://ncbi.nlm.nih.gov/pubmed/22675444" target="_blank" class="fwn">2012</A>) Congenic dissection of a major QTL for methamphetamine sensitivity implicates epistasis. Genes, Brain and Behavior 11:623-632  <A href="http://genenetwork.org/images/upload/Bryant_Palmer2012.pdf" target="_blank" class="fwn"><I>PDF version</I> </A>
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 Downing C, Balderrama-Durbin C, Kimball A, Biers J, Wright H, Gilliam D, Johnson TE (<A HREF="https://ncbi.nlm.nih.gov/pubmed/22413943" target="_blank" class="fwn">2012</A>) Quantitative trait locus mapping for ethanol teratogenesis in BXD recombinant inbred mice. Alcohol Clin Exp Res. 36:1340-1354
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@@ -561,7 +561,7 @@ Durrant C, Swertz MA, Alberts R, Arends D, Möller S, Mott R, Prins P, van der V
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 Gini B, Hager R (2012) Recombinant inbred systems can advance research in behavioral ecology. Front. Gene. 3:198  <A HREF="http://www.frontiersin.org/Genetic_Architecture/10.3389/fgene.2012.00198/fullf" target="_blank" class="fwn"><I>Full Text version</I> </A>
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-Hager R, Lu L, Rosen GD, Williams RW. (<A HREF="https://ncbi.nlm.nih.gov/pubmed/23011133" target="_blank" class="fwn">2012</A>) Genetic architecture supports mosaic brain evolution and independent brain-body size regulation. Nature Communications 3:1079  <A HREF="/images/upload/Hager_Mosaic_NatComm_2012.pdf" target="_blank" class="fwn">PDF version</A> <A href="http://www.nature.com/ncomms/journal/v3/n9/full/ncomms2086.html" target="_blank" class="fwn"><I>Full Text version</I> </A>
+Hager R, Lu L, Rosen GD, Williams RW. (<A HREF="https://ncbi.nlm.nih.gov/pubmed/23011133" target="_blank" class="fwn">2012</A>) Genetic architecture supports mosaic brain evolution and independent brain-body size regulation. Nature Communications 3:1079  <A HREF="http://genenetwork.org/images/upload/Hager_Mosaic_NatComm_2012.pdf" target="_blank" class="fwn">PDF version</A> <A href="http://www.nature.com/ncomms/journal/v3/n9/full/ncomms2086.html" target="_blank" class="fwn"><I>Full Text version</I> </A>
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 Jellen LC, Unger EL, Lu L, Williams RW, Rousseau S, Wang X, Earley CJ, Allen RP, Miles MF, Jones BC (<A HREF="https://ncbi.nlm.nih.gov/pubmed/22457016" target="_blank" class="fwn">2012</A>) Systems genetic analysis of the effects of iron deficiency in mouse brain. Neurogenetics 13:147-157
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@@ -587,13 +587,13 @@ Talishinsky A, Rosen GD (<A HREF="https://ncbi.nlm.nih.gov/pubmed/22675444" targ
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 Williams RW, Mulligan MK (<A HREF="https://ncbi.nlm.nih.gov/pubmed/23195314" target="_blank" class="fwn">2012</A>) Genetic and molecular network analysis of behavior. Int Rev Neurobiol. 104:135-57
-<SMALL><A HREF="/images/upload/Williams_Mulligan_Bioinformatics of Brain Short 2012.pdf" target="_blank" class="fwn">PDF version</A>
+<SMALL><A HREF="http://genenetwork.org/images/upload/Williams_Mulligan_Bioinformatics of Brain Short 2012.pdf" target="_blank" class="fwn">PDF version</A>
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 Wolen AR, Phillips CA, Langston MA, Vorster PJ, Bruce NA, York TP, Williams RW, Miles MF (<A HREF="https://ncbi.nlm.nih.gov/pubmed/22511924" target="_blank" class="fwn">2012</A>) Genetic dissection of acute ethanol responsive gene networks in prefrontal cortex: Functional and mechanistic implications. PLoS One 7:e33575
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 Yin L, Unger EL, Jellen LC, Earley CJ, Allen RP, Tomaszewicz A, Fleet JC, Jones BC. (<A HREF="https://ncbi.nlm.nih.gov/pubmed/22461179" target="_blank" class="fwn">2012</A>) Systems genetic analysis of multivariate response to iron deficiency in mice. Am J Physiol Regul Integr Comp Physiol 302:R1282-96
-<SMALL><A HREF="/images/upload/Yin_Jones_2012.pdf" target="_blank" class="fwn">PDF version</A>
+<SMALL><A HREF="http://genenetwork.org/images/upload/Yin_Jones_2012.pdf" target="_blank" class="fwn">PDF version</A>
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 Ziebarth JD, Cook MN, Wang X, Williams RW, Lu L, Cui Y  (<A HREF="https://ncbi.nlm.nih.gov/pubmed/22675444" target="_blank" class="fwn">2012</A>) Treatment- and population-dependent activity patterns of behavioral and expression QTLs. PLoS One 7:e31805. 
@@ -634,7 +634,7 @@ Alberts R, Lu L, Williams RW, Schughart K. (<a href="http://www.ncbi.nlm.nih.gov
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 Alberts R, Chen H, Pommerenke C, Smit AB, Spijker S, Williams RW, Geffers R, Bruder D, Schughart K (<A HREF="https://ncbi.nlm.nih.gov/pubmed/22182475" target="_blank" class="fwn">2011</A>) Expression QTL mapping in regulatory and helper T cells from the BXD family of strains reveals novel cell-specific genes, gene-gene interactions and candidate genes for auto-immune disease. BMC Genomics 12:610 <A href="http://www.biomedcentral.com/1471-2164/12/610/abstract" target="_blank" class="fwn"><I>Full Text version</I> </A> 
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-Di Curzio DL, Goldowitz D  (<a href="http://www.ncbi.nlm.nih.gov/pubmed/21347846"  target="_blank" class="fwn" >2011</a>) The genetic basis of adrenal gland weight and structure in BXD recombinant inbred mice. Mammalian Genome 22:209–234 <A href="/images/upload/DiCurzio_Goldowitz-2011_BXDAdrenals.pdf" target="_blank" class="fwn"><I>Full Text PDF version</I> </A>
+Di Curzio DL, Goldowitz D  (<a href="http://www.ncbi.nlm.nih.gov/pubmed/21347846"  target="_blank" class="fwn" >2011</a>) The genetic basis of adrenal gland weight and structure in BXD recombinant inbred mice. Mammalian Genome 22:209–234 <A href="http://genenetwork.org/images/upload/DiCurzio_Goldowitz-2011_BXDAdrenals.pdf" target="_blank" class="fwn"><I>Full Text PDF version</I> </A>
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 Gatti DM, Lu L, Williams RW, Sun W, Wright FA, Threadgill DW, Rusyn I (<a href="http://www.ncbi.nlm.nih.gov/pubmed/21616085"  target="_blank" class="fwn" >2011</a>) MicroRNA expression in the livers of inbred mice. Mutation Research 714:126-133
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@@ -655,7 +655,7 @@ Jiao Y, Jiao F, Yan J, Xiong Q, Shriner D, Hasty K, Stuart J, Gu W (<a href="htt
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 Krebs J, Römer D, Overall RW, Fabel K. Babu H, Brandt M, Williams RW, Jessberger S, Kempermann G (<a href="http://www.ncbi.nlm.nih.gov/pubmed/21398278"  target="_blank" class="fwn">2011</a>)) Adult hippocampal neurogenesis and plasticity in the infrapyramidal bundle of the mossy fiber projection: II. Genetic covariance and identification of Nos1 as a linking candidate gene. Frontiers in Neuroscience 5:106
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-<A HREF="/images/upload/Jansen_2011_PLoSONE.pdf" target="_blank" class="fwn"><I>PDF</I></A>
+<A HREF="http://genenetwork.org/images/upload/Jansen_2011_PLoSONE.pdf" target="_blank" class="fwn"><I>PDF</I></A>
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 Krebs J, Römer B, Overall RW, Fabel K, Babu H, Brandt MD, Williams RW, Jessberger S, Kempermann G (<A HREF="https://ncbi.nlm.nih.gov/pubmed/21960957" target="_blank" class="fwn">2011</A>) Adult hippocampal neurogenesis and plasticity in the infrapyramidal bundle of the mossy fiber projection: II. Genetic covariation and identification of <I>Nos1</I> as linking candidate gene. Frontiers in Neuroscience 5:106 
 <A HREF="http://www.frontiersin.org/Journal/DownloadFile.ashx?pdf=1&FileId=%202584&articleId=%2011569&Version=%201&ContentTypeId=21&FileName=%20fnins-05-00106.pdf" target="_blank" class="fwn"><I>PDF</I> </A> version
@@ -676,14 +676,14 @@ Moscou MJ, Lauter N, Steffenson B, Wise RP (<A HREF="https://ncbi.nlm.nih.gov/pu
 Mozhui K, Wang X, Chen J, Mulligan MK, Li Z, Ingles J, Chen X, Lu L and Williams RW (2011) Genetic regulation of Nrxn1 expression: an integrative cross-species analysis of schizophrenia candidate genes. Transl Psychiatry 1: e25; doi:10.1038/tp.2011.24.
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-Porcu P, O'Buckley TK, Song SC, Harenza JL, Lu L, Wang X, Williams RW, Miles MF, Morrow AL (<a href="http://www.ncbi.nlm.nih.gov/pubmed/21494628" class="fwn">2010</a>) Genetic analysis of the neurosteroid deoxycorticosterone and its relation to alcohol phenotypes: Identification of QTLs and downstream gene regulation. PLoS One 6:e18405 <A href="http://www.plosone.org/article/info%3Adoi%2F10.1371%2Fjournal.pone.0018405" target="_blank" class="fwn" ><I>Full Text HTML</I> </A> and <A href="/images/upload/Porcu_Morrow_2011.pdf" target="_blank" class="fwn" ><I>PDF </I> </A> versions
+Porcu P, O'Buckley TK, Song SC, Harenza JL, Lu L, Wang X, Williams RW, Miles MF, Morrow AL (<a href="http://www.ncbi.nlm.nih.gov/pubmed/21494628" class="fwn">2010</a>) Genetic analysis of the neurosteroid deoxycorticosterone and its relation to alcohol phenotypes: Identification of QTLs and downstream gene regulation. PLoS One 6:e18405 <A href="http://www.plosone.org/article/info%3Adoi%2F10.1371%2Fjournal.pone.0018405" target="_blank" class="fwn" ><I>Full Text HTML</I> </A> and <A href="http://genenetwork.org/images/upload/Porcu_Morrow_2011.pdf" target="_blank" class="fwn" ><I>PDF </I> </A> versions
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 Suwanwela J, Farber CR, Haung B, Song B, Pan C, Lyon KM, Lusis AJ (<a href="http://www.ncbi.nlm.nih.gov/pubmed/20954177"  target="_blank" class="fwn">2011</a>) Systems genetics analysis of mouse chondrocyte differentiation.   Journal of Bone and Mineral Research 26:74-760 
-<A HREF="/images/upload/Suwanwela_Lusis_2011.pdf" target="_blank" class="fwn"><I>PDF</I> </A> version
+<A HREF="http://genenetwork.org/images/upload/Suwanwela_Lusis_2011.pdf" target="_blank" class="fwn"><I>PDF</I> </A> version
 <LI>Tan T (<A HREF="http://www.genengnews.com/best-of-the-web/genenetwork/2581/" target="_blank" class="fwn">2011</A>) GeneNetwork: Best of the Web. Genetics Engineering & Biotechnology News  31(3)
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 Whitney IE, Raven MA, Lu L, Williams RW, Reese BE  (<a href="http://www.ncbi.nlm.nih.gov/pubmed/21330668"  target="_blank" class="fwn" >2011</a>) A QTL on chromosome 10 modulates cone photoreceptor number in the mouse retina. Invest Ophthalmol Vis Sci. 52:3228-36
@@ -716,9 +716,9 @@ Ciobanu DC, Lu L, Mozhui K, Wang X, Morris JA, Taylor WL, Dietz K, Simon P, Will
 Downing C, Marks MJ, Larson C, Johnson TE (<a href="http://www.ncbi.nlm.nih.gov/pubmed/20657349"  target="_blank" class="fwn">2010</a>) The metabotropic glutamate receptor subtype 5 mediates sensitivity to the sedative properties of ethanol. Pharmacogenet Genomics 20:553-64
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 Gatti DM, Zhao N, Chesler EJ, Bradford BU, Shabalin AA, Yordanova R, Lu L, Rusyn I (2010) Sex-specific gene expression in the BXD mouse liver. Physiol Genomics 42:456-68 
-<A href="/images/upload/Gatti_2010PhysiolGenomics.pdf" class="fwn" target="_blank"><I>Full Text PDF Version</I></A>
+<A href="http://genenetwork.org/images/upload/Gatti_2010PhysiolGenomics.pdf" class="fwn" target="_blank"><I>Full Text PDF Version</I></A>
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-Grisham W, Schottler NA, Valli-Marill J, Beck L, Beatty J (<a href="http://www.ncbi.nlm.nih.gov/pubmed/20516355"  target="_blank" class="fwn" >2010</a>) Teaching bioinformatics and neuroinformatics by using free web-based tools.  CBE--Life Sciences Education 9: 98-107  <A href="/images/upload/Grisham_CBE_2010.pdf" target="_blank" class="fwn" ><I>Full Text PDF Version</I></A>
+Grisham W, Schottler NA, Valli-Marill J, Beck L, Beatty J (<a href="http://www.ncbi.nlm.nih.gov/pubmed/20516355"  target="_blank" class="fwn" >2010</a>) Teaching bioinformatics and neuroinformatics by using free web-based tools.  CBE--Life Sciences Education 9: 98-107  <A href="http://genenetwork.org/images/upload/Grisham_CBE_2010.pdf" target="_blank" class="fwn" ><I>Full Text PDF Version</I></A>
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 Hoffman PL, Bennett B, Saba LM, Bhave SV, Carosone-Link PJ, Hornbaker CK, Kechris KJ, Williams RW, Tabakoff B  <a href="http://www.ncbi.nlm.nih.gov/pubmed/21054686"  target="_blank" class="fwn" >2010</a> Using the Phenogen website for 'in silico' analysis of morphine-induced analgesia: identifying candidate genes. Addiction Biology, doi: 10.1111/j.1369-1600.2010.00254.x 
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@@ -728,12 +728,12 @@ Lionikas A, Carlborg O, Lu L; Peirce JL, Williams RW, Yu F, Vogler GP, McClearn
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 Loguercio S, Overall RW, Michaelson JJ, Wiltshire T, Pletcher MT, Miller BH, Walker JR, Kempermann G, Su AI, Beyer A <a href="http://www.ncbi.nlm.nih.gov/pubmed/21085707"  target="_blank" class="fwn" >2010</a> Integrative analysis of low- and high-resolution eQTL. PLoS One 5(11):e13920  <A href="http://www.plosone.org/article/fetchObjectAttachment.action;jsessionid=C93DEB44991B6401001E7585AC4C4393.ambra02?uri=info%3Adoi%2F10.1371%2Fjournal.pone.0013920&representation=PDF" class="fwn" target="_blank"><I>Full Text PDF Version</I></A>
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-Lynch RM, Naswa S, Rogers Jr GL, Kanla SA, Das S, Chesler EJ, Saxton AM, Langston MA, Voy, BH (<a href="http://www.ncbi.nlm.nih.gov/pubmed/20179155"  target="_blank" class="fwn" >2010</a>) Identifying genetic loci and spleen gene coexpression networks underlying immunophenotypes in the BXD recombinant inbred mice. Physiological Genomics 41:244-253 <A href="/images/upload/BXD_immunophenotypes_2010.pdf" target="_blank" class="fwn" ><I>Full Text PDF version</I> </A> 
+Lynch RM, Naswa S, Rogers Jr GL, Kanla SA, Das S, Chesler EJ, Saxton AM, Langston MA, Voy, BH (<a href="http://www.ncbi.nlm.nih.gov/pubmed/20179155"  target="_blank" class="fwn" >2010</a>) Identifying genetic loci and spleen gene coexpression networks underlying immunophenotypes in the BXD recombinant inbred mice. Physiological Genomics 41:244-253 <A href="http://genenetwork.org/images/upload/BXD_immunophenotypes_2010.pdf" target="_blank" class="fwn" ><I>Full Text PDF version</I> </A> 
 <LI>Lynch RM (<a href="http://trace.tennessee.edu/utk_graddiss/727"  target="_blank" class="fwn" >2010</a>)  A systems genetics approach to the characterization of differential low dose radiation responses in the BXD recombinant inbred mice. PhD diss., University of Tennessee <a href="http://trace.tennessee.edu/utk_graddiss/727"  target="_blank" class="fwn" >http://trace.tennessee.edu/utk_graddiss/727</a> 
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+Malkki HA, Donga LA, de Groot SE, Battaglia FP; NeuroBSIK Mouse Phenomics Consortium, Pennartz CM (<a href="http://www.ncbi.nlm.nih.gov/pubmed/21119771"  target="_blank" class="fwn" >2010</a>) Appetitive operant conditioning in mice: heritability and dissociability of training stages. Front Behav Neuroscience 4:171  <A href="http://genenetwork.org/images/upload/BXD_immunophenotypes_2010.pdf" target="_blank" class="fwn" ><I>Full Text PDF version</I> </A> 
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-Mulligan MK, Lu L,   Overall RW,   Kempermann G,   Rogers GL,   Langston MA,   Williams RW   (<a href="http://ieeexplore.ieee.org/xpl/freeabs_all.jsp?arnumber=5510847"  target="_blank" class="fwn" >2010</a>) Genetic analysis of BDNF expression cliques and adult neurogenesis in the hippocampus.  Biomedical Sciences and Engineering Conference (BSEC) DOI: 10.1109/BSEC.2010.5510848  <A href="/images/upload/BDNF_Clique_Apr13.pdf" target="_blank" class="fwn" ><I>Full Text PDF version</I> </A> 
+Mulligan MK, Lu L,   Overall RW,   Kempermann G,   Rogers GL,   Langston MA,   Williams RW   (<a href="http://ieeexplore.ieee.org/xpl/freeabs_all.jsp?arnumber=5510847"  target="_blank" class="fwn" >2010</a>) Genetic analysis of BDNF expression cliques and adult neurogenesis in the hippocampus.  Biomedical Sciences and Engineering Conference (BSEC) DOI: 10.1109/BSEC.2010.5510848  <A href="http://genenetwork.org/images/upload/BDNF_Clique_Apr13.pdf" target="_blank" class="fwn" ><I>Full Text PDF version</I> </A> 
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 Peidis P, Giannakouros T, Burow ME, Williams RW, Scott RE (<a href="http://www.ncbi.nlm.nih.gov/pubmed/20184719"  target="_blank" class="fwn" >2010</a>) Systems genetics analyses predict a transcription role for P2P-R: molecular confirmation that P2P-R is a transcriptional co-repressor. BMC Systems Biology 4:14 <A href="http://www.biomedcentral.com/content/pdf/1752-0509-4-14.pdf" target="_blank" class="fwn" ><I>Full Text PDF version</I> and </A> 
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@@ -743,7 +743,7 @@ Reinius B, Shi C, Hengshuo L, Sandhu KS, Radomska KJ, Rosen GD, Lu L, Kullander
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 Rulten SL, Ripley TL, Hunt CL, Stephens DN, Mayne LV (<a href="http://www.ncbi.nlm.nih.gov/pubmed/16594979"  target="_blank" class="fwn">2010</a>) Sp1 and NFkappaB pathways are regulated in brain in response to acute and chronic ethanol. Genes, Brain and Behavior  5:257-73.  <A href="http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2855868/" target="_blank" class="fwn"><I>Full Text HTML Version</I></A>
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-Suwanwela J, Farber CR, Haung BL, Song B, Pan C, Lyons KM, Lusis AJ  (<a href=""/images/upload/Suwanwela-1.JBMR.10.pdf"  target="_blank" class="fwn" >2010</a>) Systems genetics analysis of mouse chondrocyte differentiation. JBMR, in press <A href="/images/upload/Suwanwela-1.JBMR.10.pdf" target="_blank" class="fwn" ><I>Full Text PDF version</I> </A> 
+Suwanwela J, Farber CR, Haung BL, Song B, Pan C, Lyons KM, Lusis AJ  (<a href=""http://genenetwork.org/images/upload/Suwanwela-1.JBMR.10.pdf"  target="_blank" class="fwn" >2010</a>) Systems genetics analysis of mouse chondrocyte differentiation. JBMR, in press <A href="http://genenetwork.org/images/upload/Suwanwela-1.JBMR.10.pdf" target="_blank" class="fwn" ><I>Full Text PDF version</I> </A> 
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 Wang X, Chen Y, Wang X, Lu L. (<a href="http://www.ncbi.nlm.nih.gov/pubmed/20054728"  target="_blank" class="fwn" >2010</a>) Genetic regulatory network analysis for <I>App</I> based on genetical genomics approach. Exp Aging Res 36:79-93 
 
@@ -776,7 +776,7 @@ Wang X, Chen Y, Wang X, Lu L. (<a href="http://www.ncbi.nlm.nih.gov/pubmed/20054
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 Badea A, Johnson GA, Williams RW (<a href="http://www.ncbi.nlm.nih.gov/pubmed/19349225"  target="_blank" class="fwn">2009</a>) Genetic dissection of the mouse brain using high-field magnetic resonance microscopy. Neuroimaging 45:1067-79
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-Boon AC, deBeauchamp J, Hollmann A, Luke J, Kotb M, Rowe S, Finkelstein D, Neale G, Lu L, Williams RW, Webby RJ (<a href="http://www.ncbi.nlm.nih.gov/pubmed/19706712"  target="_blank" class="fwn">2009</a>) Host genetic variation affects resistance to infection with a highly pathogenic H5N1 influenza A virus in mice.  J Virol 83:10417-26  PMID: 19706712 <A HREF="http://www.genenetwork.org/images/upload/Boon_H5N1_2009.pdf" target="_blank" class="fwn"><I>Full Text PDF Version</I></A>
+Boon AC, deBeauchamp J, Hollmann A, Luke J, Kotb M, Rowe S, Finkelstein D, Neale G, Lu L, Williams RW, Webby RJ (<a href="http://www.ncbi.nlm.nih.gov/pubmed/19706712"  target="_blank" class="fwn">2009</a>) Host genetic variation affects resistance to infection with a highly pathogenic H5N1 influenza A virus in mice.  J Virol 83:10417-26  PMID: 19706712 <A HREF="http://www.genenetwork.orghttp://genenetwork.org/images/upload/Boon_H5N1_2009.pdf" target="_blank" class="fwn"><I>Full Text PDF Version</I></A>
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 Brigman JL, Mathur P, Lu L, Williams RW, Holmes A (<a href="http://www.ncbi.nlm.nih.gov/pubmed/18830130"  target="_blank" class="fwn">2009</a>) Genetic relationship between anxiety- and fear-related behaviors in BXD recombinant inbred mice. Behavioral Pharmacology 20:204-209
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@@ -836,7 +836,7 @@ Silva GL, Junta CM, Sakamoto-Hojo ET, Donadi EA, Louzada-Junior P, Passos GA (<a
 Tapocik JD, Letwin N, Mayo CL, Frank B, Luu T, Achinike O, House C, Williams R, Elmer GI, Lee NH (<a href="http://www.ncbi.nlm.nih.gov/pubmed/19386926"  target="_blank" class="fwn">2009</a>) Identification of candidate genes and gene networks specifically associated with analgesic tolerance to morphine. J Neurosci 2:5295-307  <A href="http://www.jneurosci.org/cgi/content/full/29/16/5295" target="_blank" class="fwn"><I>Full Text HTML</I></A>
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 Thomas C, Gioiello A, Noriega L, Strehle A, Oury J, Rizzo G, Macchiarulo A, Yamamoto H, Mataki C, Pruzanski M, Pellicciari R, Auwerx J, Schoonjans K (<a href="http://www.ncbi.nlm.nih.gov/pubmed/19723493"  target="_blank" class="fwn">2009</a>) TGR5-mediated bile acid sensing controls glucose homeostasis. Cell Metab 10:167-77
-<A href="http://www.genenetwork.org/images/upload/Thomas_Auwerx_2009.pdf" target="_blank" class="fwn"><I>Full Text PDF</I></A>
+<A href="http://www.genenetwork.orghttp://genenetwork.org/images/upload/Thomas_Auwerx_2009.pdf" target="_blank" class="fwn"><I>Full Text PDF</I></A>
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 Webb BT, McClay JL, Vargas-Irwin C, York TP, van den Oord EJCG (<a href="http://www.ncbi.nlm.nih.gov/pubmed/19723493"  target="_blank" class="fwn">2009</a>) In silico whole genome association scan for murine prepulse inhibition. PLoS ONE 4: e5246. doi:10.1371/journal.pone.0005246
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@@ -928,7 +928,7 @@ Hayat Y, Yang J, Xu HM, Zhu J (<a href="http://www.ncbi.nlm.nih.gov/pubmed/19067
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 Heimel JA, Hermans JM, Sommeijer JP; Neuro-Bsik Mouse Phenomics consortium, Levelt CN (<a href="http://www.ncbi.nlm.nih.gov/pubmed/18700840
 " target="_blank" class="fwn">2008</a>) Genetic control of experience-dependent plasticity in the visual cortex. Genes Brain Behav 7:915-23.
-<A href="http://www.genenetwork.org/images/upload/Heimel_2008_BXDVisualCortex.pdf" target="_blank" class="fwn"><I>Full Text PDF Version</I></A>
+<A href="http://www.genenetwork.orghttp://genenetwork.org/images/upload/Heimel_2008_BXDVisualCortex.pdf" target="_blank" class="fwn"><I>Full Text PDF Version</I></A>
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 Jan TA, Lu L, Li CX, Williams RW, Waters RS (<a href="http://www.biomedcentral.com/1471-2202/9/3"  target="_blank" class="fwn">2008</a>) Genetic analysis of posterior medial barrel subfield (PMBSF) size in somatosensory cortex (SI) in recombinant inbred strains of mice. BMC Neuroscience 9:3 
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@@ -941,7 +941,7 @@ Jones LC, Beard JL, Jones BC (<a href="http://www.ncbi.nlm.nih.gov/pubmed/181893
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 Jones LC, Earley CJ, Allen RP, Jones BC (<a href="http://www.ncbi.nlm.nih.gov/pubmed/18189309
 " target="_blank" class="fwn">2008</a>) Of mice and men, periodic limb movements and iron: how the human genome informs the mouse genome. Genes, Brain and Behavior 7:513-514.
-<A href="/images/upload/Jones_OfMiceandMen.pdf" target="_blank" class="fwn"><I>Full Text PDF Version</I></A>
+<A href="http://genenetwork.org/images/upload/Jones_OfMiceandMen.pdf" target="_blank" class="fwn"><I>Full Text PDF Version</I></A>
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 Kang HM, Ye C, Eskin E (<a href="http://www.ncbi.nlm.nih.gov/pubmed/18791227
 " target="_blank" class="fwn">2008</a>) Accurate discovery of expression quantitative trait loci under confounding from spurious and genuine regulatory hotspots. Genetics  doi:10.1534/genetics.108.094201 
@@ -949,7 +949,7 @@ Kang HM, Ye C, Eskin E (<a href="http://www.ncbi.nlm.nih.gov/pubmed/18791227
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 Kadarmideen HN (<a href="http://www.ncbi.nlm.nih.gov/pubmed/19045837
 " target="_blank" class="fwn">2008</a>) Genetical systems biology in livestock: Application to  gonadotrophin releasing hormone and reproduction. IET Systems Biology 2:423-441
-<A href="/images/upload/Kadarmideen_2008.pdf" target="_blank" class="fwn"><I>Full Text PDF Version</I></A>
+<A href="http://genenetwork.org/images/upload/Kadarmideen_2008.pdf" target="_blank" class="fwn"><I>Full Text PDF Version</I></A>
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 Kerns RT, Miles MF (2008) Microarray analysis of ethanol-induced changes in gene expression. Alcohol: Methods and Protocols. In: Methods in Molecular Biology 447:395-410
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@@ -970,7 +970,7 @@ Macedo C, Magalhaes DA, Tonani M, Marques MC, Junta CM, Passos GA (<a href="http
 Mol Cell Biochem 318:63-71
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 Morahan G, Peeva V, Munish M, Williams R (2008) Systems genetics can provide new insights in to immune regulation and autoimmunity. Journal of Autoimmunity 31:233-236.
-<A href="http://www.genenetwork.org/images/upload/Morahan_2008.pdf" target="_blank" class="fwn"><I>Full Text PDF Version</I></A>
+<A href="http://www.genenetwork.orghttp://genenetwork.org/images/upload/Morahan_2008.pdf" target="_blank" class="fwn"><I>Full Text PDF Version</I></A>
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 Mozhui RT, Ciobanu DC, Schikorski T, Wang XS, Lu L, Williams RW (2008) Dissection of a QTL hotspot on mouse distal chromosome 1 that modulates neurobehavioral phenotypes and gene expression. PLoS Genetics 4: e1000260. doi:10.1371/journal.pgen.1000260
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@@ -1051,7 +1051,7 @@ Fox JG, Barthold SW, Davisson MT, Newcomer CE (<a href="http://books.google.com/
 French L, Pavlidis P (<a href="http://bib.oxfordjournals.org/cgi/content/abstract/8/6/446"  target="_blank" class="fwn">2007</a>) Informatics in neuroscience. Briefings in Bioinformatics 8:446-456
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- <A href="/images/upload/Gatti_Rusyn_2007.pdf"  target="_blank" class="fwn"><I>Full Text PDF Version</I></A> 
+ <A href="http://genenetwork.org/images/upload/Gatti_Rusyn_2007.pdf"  target="_blank" class="fwn"><I>Full Text PDF Version</I></A> 
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 Grice DE, Reenila I, Mannisto PT, Brooks Ai, Smith GG, Golden GT, Buxbaum JD, Berrettini WH (2007) Transcriptional profiling of C57 and DBA strains of mice in the absence and presence of morphine. BMC Genomics 8:76
 <A href="http://www.biomedcentral.com/content/pdf/1471-2164-8-76.pdf"  target="_blank" class="fwn"><I>Full Text PDF Version</I></A>, 
@@ -1073,12 +1073,12 @@ Jawad M, Giotopoulos G, Fitch S, Cole C, Plumb M, Talbot CJ (<a href="http://www
 Jessberger S, Gage FH (<a href="http://www.pubmedcentral.nih.gov/articlerender.fcgi?artid=1800354"  target="_blank" class="fwn">2007</a>) ZOOMING IN: a new high-resolution gene expression atlas of the brain. Mol Syst Biol. 3:75
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 Jones BC, Beard JL, Gibson JN, Unger EL, Allen RP, McCarthy KA, Earley CJ (<a href="http://www.ncbi.nlm.nih.gov/pubmed/17475678"  target="_blank" class="fwn">2007</a>) Systems genetic analysis of peripheral iron parameters in the mouse. American Journal of Physiology Regul Integr Comp Physiol 293: R116-124
-<A href="http://ajpregu.physiology.org/cgi/content/full/293/1/R116" target="_blank" class="fwn"><I>Full Text HTML Version</I></A>, and see <A href="http://www.genenetwork.org/images/upload/Jones et al 1999 Pharmacogenetics3-0.pdf" target="_blank" class="fwn"><I>full text of Jones et al., 1999.</I></A>
+<A href="http://ajpregu.physiology.org/cgi/content/full/293/1/R116" target="_blank" class="fwn"><I>Full Text HTML Version</I></A>, and see <A href="http://www.genenetwork.orghttp://genenetwork.org/images/upload/Jones et al 1999 Pharmacogenetics3-0.pdf" target="_blank" class="fwn"><I>full text of Jones et al., 1999.</I></A>
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 Jones BC and Mormede JP (2007) Neurobehavioral genetics: methods and applications. (<a href="http://books.google.com/books?id=P85FPhRKFVMC&pg=PA102&lpg=PA102&dq=genenetwork+webqtl&source=web&ots=-qg3S-C0xQ&sig=HoOCQpZrV3i45I0vPfDb3PfDMvY"  target="_blank" class="fwn">2007</a>)" CRC Press, Taylor & Francis Group, Boca Raton, Florida, p. 102, ISBN 084931903X
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 Kadarmideen HN, Reverter A (2007) Combined genetic, genomic and transcriptomic methods in the analysis of animal traits. CABI Review: Perspectives in Agriculture, Veterinary Science, Nutrition and Natural Resources 2: No. 042 (16 pp) 
-<A href="/images/upload/Kadarmideen_Reverter_2007.pdf" target="_blank" class="fwn"><I>Full Text PDF Version</I></A>
+<A href="http://genenetwork.org/images/upload/Kadarmideen_Reverter_2007.pdf" target="_blank" class="fwn"><I>Full Text PDF Version</I></A>
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 Korostynski M, Piechota M, Kaminska D, Solecki W. Przewlocki R (<a href="http://genomebiology.com/2007/8/6/R128"  target="_blank" class="fwn">2007</a>) Morphine effects on striatal transcriptome in mice. Genome Biology 8:R128 
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@@ -1097,7 +1097,7 @@ Mouse Phenotype Database Integration Consortium (<a href="http://www.ncbi.nlm.ni
 Miyairi I, Tatireddigari VR, Mahdi OS, Rose LA, Belland RJ, Lu L, Williams RW, Byrne GI (<a href="http://www.ncbi.nlm.nih.gov/pubmed/17641048"  target="_blank" class="fwn">2007</a>) The p47 GTPases Iigp2 and Irgb10 regulate innate immunity and inflammation to murine Chlamydia psittaci. J Immunol 179:1814-1824
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 Mozhui K, Hamre KM, Holmes A, Lu L, Williams RW (<a href="http://www.ncbi.nlm.nih.gov/pubmed/17131200"  target="_blank" class="fwn">2007</a>) Genetic and structural analysis of the basolateral amygdala complex in BXD recombinant inbred mice. Behav Genet. 37:223-243
-<A href="http://www.genenetwork.org/images/upload/Mozhui_et_al_2007.doc" target="_blank" class="fwn"><I>Full Text MS Word Version (authors' copy)</I></A> 
+<A href="http://www.genenetwork.orghttp://genenetwork.org/images/upload/Mozhui_et_al_2007.doc" target="_blank" class="fwn"><I>Full Text MS Word Version (authors' copy)</I></A> 
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 Peirce JL, Broman KW, Lu L, Williams RW (<a href="http://www.ncbi.nlm.nih.gov/pubmed/17400728"  target="_blank" class="fwn">2007</a>) A simple method for combining genetic mapping data from multiple crosses and experimental designs. PLoS ONE 2:e1036
 <A href="http://www.plosone.org/article/fetchObjectAttachment.action;jsessionid=009B2741B48AC1CB94E68107E714A1B0?uri=info%3Adoi%2F10.1371%2Fjournal.pone.0001036&representation=PDF"  target="_blank" class="fwn"><I>Full Text PDF Version</I></A>, 
@@ -1123,10 +1123,10 @@ Taylor M, Valdar W, Kumar A, Flint J, Mott R (<a href="http://www.ncbi.nlm.nih.g
 <A href="http://bioinformatics.oxfordjournals.org/cgi/content/full/23/12/1545" target="_blank" class="fwn"><I>Full Text HTML Version</I></A>
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 Vazquez-Chona F, Lu L, Williams RW, Geisert EE (2007) Genetic influences on retinal gene expression and wound healing.  Gene Regulation and Systems Biology 1:327-348
-<A href="/images/upload/Vazquez2007.pdf" class="fwn"><I>Full Text PDF Version</I></A>
+<A href="http://genenetwork.org/images/upload/Vazquez2007.pdf" class="fwn"><I>Full Text PDF Version</I></A>
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 von Rohr P, Friberg M, Kadarmideen HN (<a href="http://www.ncbi.nlm.nih.gov/pubmed/17688316"  target="_blank" class="fwn">2007</a>) Prediction of transcription factor binding sites using results from genetical genomics investigations. Journal of Bioinformatics and Computational Biology 5:773-793
-<A href="/images/upload/vonRohr_etal_2007.pdf" target="_blank" class="fwn"><I>Full Text PDF Version</I></A>
+<A href="http://genenetwork.org/images/upload/vonRohr_etal_2007.pdf" target="_blank" class="fwn"><I>Full Text PDF Version</I></A>
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 Wan X, Pavlidis P (<a href="http://www.ncbi.nlm.nih.gov/pubmed/17917127"  target="_blank" class="fwn">2007</a>) Sharing and reusing gene expression profiling data in neuroscience. Neuroinformatics 5:161-75.
 <A href="http://www.bioinformatics.ubc.ca/pavlidis/lab/reuse/walkthrough.pdf" target="_blank" class="fwn"><I>HTML example of using GEMMA and GeneNetwork</I></A>. 
@@ -1256,7 +1256,7 @@ Kerns RT, Ravindranathan A, Hassan S, Cage MP, York T, Williams RW, Miles MF (<A
 Li HQ, Lu L, Manly KF, Wang J, Zhou M, Williams RW, Cui Y (<A HREF="http://hmg.oupjournals.org/cgi/content/abstract/ddi124v1" target="_blank" class="fwn">2005</A>) Inferring gene transcriptional modulatory relations: a genetical genomics approach. Human Molecular Genetics 14: 1119-1125
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 Li J, Burmeister M (<A HREF="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=pubmed&cmd=Retrieve&dopt=AbstractPlus&list_uids=16244315&query_hl=5&itool=pubmed_docsum" target="_blank" class="fwn">2005</A>) Genetical genomics: combining genetics with gene expression analysis. Human Molecular Genetics 14:163-169.
- [<A href="/images/upload/Li_Burmeister_2005.pdf"  target="_blank" class="fwn"><I> Full text PDF version</I></A>]
+ [<A href="http://genenetwork.org/images/upload/Li_Burmeister_2005.pdf"  target="_blank" class="fwn"><I> Full text PDF version</I></A>]
 
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 Lozier JN, Tayebi N, Zhang P (<A HREF="http://www.bloodjournal.org/cgi/content/abstract/" target="_blank" class="fwn">2005</A>) Mapping of genes that control the antibody response to human factor IX in mice. Blood 105: 1029-1035
@@ -1268,7 +1268,7 @@ MacLaren EJ, Sikela JM (<A HREF="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?d
 Matthews B, Bhave SV, Belknap JK, Brittingham C, Chesler EJ, Hitzemann RJ, Hoffman PL, Lu L, McWeeney S, Miles MR, Tabakoff B, Williams RW (<A HREF="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=pubmed&cmd=Retrieve&dopt=AbstractPlus&list_uids=16205371&query_hl=1&itool=pubmed_docsum" target="_blank" class="fwn">2005</A>) Complex genetics of interactions of alcohol and CNS function and behavior. Alcoholism: Clinical and Experimental Research 29:1706-1719
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 Mountz JD, Yang P, Wu Q, Zhou J, Tousson A, Fitzgerald A, Allen J, Wang X, Cartner S, Grizzle WE, Yi N, Lu L, Williams RW, Hsu HC (<A HREF="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15683449&query_hl=4" target="_blank" class="fwn">2005</A>) Genetic segregation of spontaneous erosive arthritis and generalized autoimmune disease in BXD2 recombinant inbred strain of mice. Scadinavian Journal of Immunology 61:1-11
-<A href="/images/upload/Mountz2005.pdf"  target="_blank" class="fwn"><I>Full Text PDF Version</I></A> 
+<A href="http://genenetwork.org/images/upload/Mountz2005.pdf"  target="_blank" class="fwn"><I>Full Text PDF Version</I></A> 
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 Li CX, Wei X, Lu L, Peirce JL, Wiliams RW, Waters RS (<A HREF="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16338823&query_hl=12&itool=pubmed_docsum" target="_blank" class="fwn">2005</A>) Genetic analysis of barrel field size in the first somatosensory area (S1) in inbred and recombinant inbred strains of mice. Somatosensory and Motor Research 22:141-150 
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