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| author | Pjotr Prins | 2016-04-20 10:44:10 +0000 |
|---|---|---|
| committer | Pjotr Prins | 2016-04-20 10:44:10 +0000 |
| commit | 28ccde8e417b965710bbeef48d468a6b717c10a4 (patch) | |
| tree | a72275a798bec47785f0e810b799a8ba2c351009 /wqflask | |
| parent | 9164ffc23879a8f9338939c06c36d3d49c3c899a (diff) | |
| download | genenetwork2-28ccde8e417b965710bbeef48d468a6b717c10a4.tar.gz | |
A few fixes to get the webserver running again
Diffstat (limited to 'wqflask')
| -rw-r--r-- | wqflask/utility/tools.py | 1 | ||||
| -rw-r--r-- | wqflask/wqflask/marker_regression/gemma_mapping.py | 4 | ||||
| -rw-r--r-- | wqflask/wqflask/marker_regression/marker_regression.py | 4 |
3 files changed, 3 insertions, 6 deletions
diff --git a/wqflask/utility/tools.py b/wqflask/utility/tools.py index 9405a9c6..dd8c4a1e 100644 --- a/wqflask/utility/tools.py +++ b/wqflask/utility/tools.py @@ -5,7 +5,6 @@ import os import sys from wqflask import app - def get_setting(command_id,guess=None): """Resolve a setting from the environment or the global settings in app.config, with get_valid_path is a function checking whether the diff --git a/wqflask/wqflask/marker_regression/gemma_mapping.py b/wqflask/wqflask/marker_regression/gemma_mapping.py index ae426621..8fb086c1 100644 --- a/wqflask/wqflask/marker_regression/gemma_mapping.py +++ b/wqflask/wqflask/marker_regression/gemma_mapping.py @@ -1,9 +1,7 @@ import os from base import webqtlConfig -from utility.tools import gemma_command - -GEMMA_PATH,GEMMA_COMMAND = gemma_command() +from utility.tools import GEMMA_COMMAND def run_gemma(this_dataset, samples, vals): """Generates p-values for each marker using GEMMA""" diff --git a/wqflask/wqflask/marker_regression/marker_regression.py b/wqflask/wqflask/marker_regression/marker_regression.py index 39d7c78a..97949f93 100644 --- a/wqflask/wqflask/marker_regression/marker_regression.py +++ b/wqflask/wqflask/marker_regression/marker_regression.py @@ -1103,5 +1103,5 @@ def get_markers_from_csv(included_markers, p_values, group_name): return markers - if __name__ == '__main__': - import cPickle as pickle +if __name__ == '__main__': + import cPickle as pickle |