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authorZachary Sloan2013-07-19 16:13:47 -0500
committerZachary Sloan2013-07-19 16:13:47 -0500
commit6aaefdaae3a9fb068278d9b94d8cdf25d4f8d852 (patch)
treef002469b1ef94ec5de6e379f1bc4aa0e182a3849 /wqflask
parent0fcadee805a6d4a2007e57a69ab130eb9b1c1a3c (diff)
downloadgenenetwork2-6aaefdaae3a9fb068278d9b94d8cdf25d4f8d852.tar.gz
Created file gen_group_samplelists that iterates through all genofiles
and builds each groups' samplelist
Diffstat (limited to 'wqflask')
-rwxr-xr-xwqflask/base/data_set.py50
-rwxr-xr-xwqflask/base/webqtlConfig.py8
-rw-r--r--wqflask/maintenance/gen_select_dataset.py4
-rw-r--r--wqflask/maintenance/get_group_samplelists.py43
-rw-r--r--wqflask/wqflask/static/new/javascript/dataset_menu_structure.json224
5 files changed, 206 insertions, 123 deletions
diff --git a/wqflask/base/data_set.py b/wqflask/base/data_set.py
index 30221503..cf219fda 100755
--- a/wqflask/base/data_set.py
+++ b/wqflask/base/data_set.py
@@ -16,8 +16,6 @@
# Contact Drs. Robert W. Williams and Xiaodong Zhou (2010)
# at rwilliams@uthsc.edu and xzhou15@uthsc.edu
#
-#we
-#
# This module is used by GeneNetwork project (www.genenetwork.org)
from __future__ import absolute_import, print_function, division
@@ -27,6 +25,7 @@ import string
import collections
import json
+import gzip
import cPickle as pickle
import itertools
@@ -52,8 +51,6 @@ from pprint import pformat as pf
DS_NAME_MAP = {}
def create_dataset(dataset_name, dataset_type = None):
-
- print("dataset_type:", dataset_type)
if not dataset_type:
dataset_type = Dataset_Getter(dataset_name)
#dataset_type = get_dataset_type_from_json(dataset_name)
@@ -129,7 +126,7 @@ def create_datasets_list():
for result in g.db.execute(query).fetchall():
#The query at the beginning of this function isn't necessary here, but still would
#rather just reuse it
- print("type: {}\tname: {}".format(dataset_type, result.Name))
+ #print("type: {}\tname: {}".format(dataset_type, result.Name))
dataset = create_dataset(result.Name, dataset_type)
datasets.append(dataset)
@@ -261,6 +258,36 @@ class DatasetGroup(object):
if maternal and paternal:
self.parlist = [maternal, paternal]
+ def get_sample_list(self):
+ genofilename = str(os.path.join(webqtlConfig.GENODIR, self.name + '.geno'))
+ genofile = open(genofilename, "r")
+ for line in genofile:
+ line = line.strip()
+ if line.startswith(("#", "@")):
+ continue
+ headline = line
+ break
+ headers = headline.split("\t")
+ if headers[3] == "Mb":
+ self.samplelist = headers[4:]
+ else:
+ self.samplelist = headers[3:]
+
+ #if genotype_1.type == "group" and self.parlist:
+ # genotype_2 = genotype_1.add(Mat=self.parlist[0], Pat=self.parlist[1]) #, F1=_f1)
+ #else:
+ # genotype_2 = genotype_1
+
+ #determine default genotype object
+ #if self.incparentsf1 and genotype_1.type != "intercross":
+ # genotype = genotype_2
+ #else:
+ # self.incparentsf1 = 0
+ # genotype = genotype_1
+
+ #self.samplelist = list(genotype.prgy)
+
+
def read_genotype_file(self):
'''Read genotype from .geno file instead of database'''
#if self.group == 'BXD300':
@@ -275,7 +302,18 @@ class DatasetGroup(object):
# reaper barfs on unicode filenames, so here we ensure it's a string
full_filename = str(os.path.join(webqtlConfig.GENODIR, self.name + '.geno'))
- genotype_1.read(full_filename)
+ if os.path.isfile(full_filename):
+ print("Reading file: ", full_filename)
+ genotype_1.read(full_filename)
+ print("File read")
+ else:
+ try:
+ full_filename = str(os.path.join(webqtlConfig.TMPDIR, self.name + '.geno'))
+ #print("Reading file")
+ genotype_1.read(full_filename)
+ #print("File read")
+ except IOError:
+ print("File doesn't exist!")
if genotype_1.type == "group" and self.parlist:
genotype_2 = genotype_1.add(Mat=self.parlist[0], Pat=self.parlist[1]) #, F1=_f1)
diff --git a/wqflask/base/webqtlConfig.py b/wqflask/base/webqtlConfig.py
index d4511212..67a9c63f 100755
--- a/wqflask/base/webqtlConfig.py
+++ b/wqflask/base/webqtlConfig.py
@@ -35,7 +35,7 @@ NCBI_LOCUSID = "http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=gene&cmd=Retrie
UCSC_REFSEQ = "http://genome.cse.ucsc.edu/cgi-bin/hgGene?db=%s&hgg_gene=%s&hgg_chrom=chr%s&hgg_start=%s&hgg_end=%s"
GENBANK_ID = "http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=Nucleotide&cmd=search&doptcmdl=DocSum&term=%s"
OMIM_ID = "http://www.ncbi.nlm.nih.gov/omim/%s"
-UNIGEN_ID = "http://www.ncbi.nlm.nih.gov/UniGene/clust.cgi?ORG=%s&CID=%s"
+UNIGEN_ID = "http://www.ncbi.nlm.nih.gov/UniGene/clust.cgi?ORG=%s&CID=%s";
HOMOLOGENE_ID = "http://www.ncbi.nlm.nih.gov/sites/entrez?Db=homologene&Cmd=DetailsSearch&Term=%s"
PUBMEDLINK_URL = "http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&list_uids=%s&dopt=Abstract"
UCSC_POS = "http://genome.ucsc.edu/cgi-bin/hgTracks?clade=mammal&org=%s&db=%s&position=chr%s:%s-%s&pix=800&Submit=submit"
@@ -53,12 +53,12 @@ GNROOT = "/home/zas1024/gene/" # Will remove this and dependent items later
SECUREDIR = GNROOT + 'secure/'
COMMON_LIB = GNROOT + 'support/admin'
HTMLPATH = GNROOT + 'web/'
-PYLMM_PATH = '/home/zas1024/plink/'
-SNP_PATH = '/home/zas1024/snps/'
+PYLMM_PATH = '/home/zas1024/'
+SNP_PATH = '/mnt/xvdf1/snps/'
IMGDIR = HTMLPATH +'image/'
IMAGESPATH = HTMLPATH + 'images/'
UPLOADPATH = IMAGESPATH + 'upload/'
-TMPDIR = HTMLPATH + 'tmp/'
+TMPDIR = '/tmp/'
GENODIR = HTMLPATH + 'genotypes/'
NEWGENODIR = HTMLPATH + 'new_genotypes/'
GENO_ARCHIVE_DIR = GENODIR + 'archive/'
diff --git a/wqflask/maintenance/gen_select_dataset.py b/wqflask/maintenance/gen_select_dataset.py
index 8cb94f20..d4e47327 100644
--- a/wqflask/maintenance/gen_select_dataset.py
+++ b/wqflask/maintenance/gen_select_dataset.py
@@ -115,7 +115,7 @@ def build_types(species, group):
(all types except phenotype/genotype are tissues)
"""
- Cursor.execute("""select distinct Tissue.Name, Tissue.Name
+ Cursor.execute("""select distinct Tissue.Name, concat(Tissue.Name, ' mRNA')
from ProbeFreeze, ProbeSetFreeze, InbredSet, Tissue, Species
where Species.Name = %s and Species.Id = InbredSet.SpeciesId and
InbredSet.Name = %s and
@@ -192,6 +192,8 @@ def main():
datasets=datasets,
)
+ print("data:", data)
+
output_file = """../wqflask/static/new/javascript/dataset_menu_structure.json"""
with open(output_file, 'w') as fh:
diff --git a/wqflask/maintenance/get_group_samplelists.py b/wqflask/maintenance/get_group_samplelists.py
new file mode 100644
index 00000000..2434038e
--- /dev/null
+++ b/wqflask/maintenance/get_group_samplelists.py
@@ -0,0 +1,43 @@
+from __future__ import absolute_import, print_function, division
+
+import os
+import glob
+import gzip
+
+from base import webqtlConfig
+
+
+def get_sample_list_dir(geno_dir="/home/zas1024/gene/web/genotypes/"):
+ os.chdir(geno_dir)
+
+ for group_file in glob.glob("*"):
+ if group_file.lower().endswith(('.geno', '.geno.gz')):
+ #group_name = genofilename.split('.')[0]
+ sample_list = get_sample_list(group_file)
+ print("\n\n{}\n\n".format(sample_list))
+
+
+def get_sample_list(group_file):
+ print(group_file)
+ genofilename = str(os.path.join(webqtlConfig.GENODIR, group_file))
+ if genofilename.lower().endswith('.geno.gz'):
+ genofile = gzip.open(genofilename)
+ else:
+ genofile = open(genofilename)
+ for line in genofile:
+ line = line.strip()
+ if not line:
+ continue
+ if line.startswith(("#", "@")):
+ continue
+ headline = line
+ break
+ headers = headline.split("\t")
+ if headers[3] == "Mb":
+ samplelist = headers[4:]
+ else:
+ samplelist = headers[3:]
+ return samplelist
+
+if __name__ == '__main__':
+ get_sample_list_dir()
diff --git a/wqflask/wqflask/static/new/javascript/dataset_menu_structure.json b/wqflask/wqflask/static/new/javascript/dataset_menu_structure.json
index 49c44fbd..4aae20ba 100644
--- a/wqflask/wqflask/static/new/javascript/dataset_menu_structure.json
+++ b/wqflask/wqflask/static/new/javascript/dataset_menu_structure.json
@@ -2556,7 +2556,7 @@
],
[
"Leaf mRNA",
- "Leaf mRNA"
+ "Leaf mRNA mRNA"
]
],
"SXM": [
@@ -2570,11 +2570,11 @@
],
[
"Embryo mRNA",
- "Embryo mRNA"
+ "Embryo mRNA mRNA"
],
[
"Leaf mRNA",
- "Leaf mRNA"
+ "Leaf mRNA mRNA"
]
]
},
@@ -2590,7 +2590,7 @@
],
[
"Whole Body mRNA",
- "Whole Body mRNA"
+ "Whole Body mRNA mRNA"
]
],
"Oregon-R_x_2b3": [
@@ -2604,7 +2604,7 @@
],
[
"Whole Body mRNA",
- "Whole Body mRNA"
+ "Whole Body mRNA mRNA"
]
]
},
@@ -2620,7 +2620,7 @@
],
[
"Brain mRNA",
- "Brain mRNA"
+ "Brain mRNA mRNA"
]
],
"AD-cases-controls-Myers": [
@@ -2634,7 +2634,7 @@
],
[
"Brain mRNA",
- "Brain mRNA"
+ "Brain mRNA mRNA"
]
],
"CANDLE": [
@@ -2648,11 +2648,11 @@
],
[
"Methylation",
- "Methylation"
+ "Methylation mRNA"
],
[
"Newborn Cord Blood mRNA",
- "Newborn Cord Blood mRNA"
+ "Newborn Cord Blood mRNA mRNA"
]
],
"CEPH-2004": [
@@ -2666,7 +2666,7 @@
],
[
"Lymphoblast B-cell mRNA",
- "Lymphoblast B-cell mRNA"
+ "Lymphoblast B-cell mRNA mRNA"
]
],
"HB": [
@@ -2680,15 +2680,15 @@
],
[
"Cerebellum mRNA",
- "Cerebellum mRNA"
+ "Cerebellum mRNA mRNA"
],
[
"Prefrontal Cortex mRNA",
- "Prefrontal Cortex mRNA"
+ "Prefrontal Cortex mRNA mRNA"
],
[
"Primary Visual Cortex mRNA",
- "Primary Visual Cortex mRNA"
+ "Primary Visual Cortex mRNA mRNA"
]
],
"HLC": [
@@ -2702,7 +2702,7 @@
],
[
"Liver mRNA",
- "Liver mRNA"
+ "Liver mRNA mRNA"
]
],
"HLT": [
@@ -2716,7 +2716,7 @@
],
[
"Lung mRNA",
- "Lung mRNA"
+ "Lung mRNA mRNA"
]
],
"HSB": [
@@ -2730,67 +2730,67 @@
],
[
"Amygdala mRNA",
- "Amygdala mRNA"
+ "Amygdala mRNA mRNA"
],
[
"Cerebellar Cortex mRNA",
- "Cerebellar Cortex mRNA"
+ "Cerebellar Cortex mRNA mRNA"
],
[
"Dorsolateral Prefrontal Cortex mRNA",
- "Dorsolateral Prefrontal Cortex mRNA"
+ "Dorsolateral Prefrontal Cortex mRNA mRNA"
],
[
"Hippocampus mRNA",
- "Hippocampus mRNA"
+ "Hippocampus mRNA mRNA"
],
[
"Inferior Temporal Cortex mRNA",
- "Inferior Temporal Cortex mRNA"
+ "Inferior Temporal Cortex mRNA mRNA"
],
[
"Medial Prefrontal Cortex mRNA",
- "Medial Prefrontal Cortex mRNA"
+ "Medial Prefrontal Cortex mRNA mRNA"
],
[
"Mediodorsal Nucleus of Thalamus mRNA",
- "Mediodorsal Nucleus of Thalamus mRNA"
+ "Mediodorsal Nucleus of Thalamus mRNA mRNA"
],
[
"Orbital Prefrontal Cortex mRNA",
- "Orbital Prefrontal Cortex mRNA"
+ "Orbital Prefrontal Cortex mRNA mRNA"
],
[
"Posterior Inferior Parietal Cortex mRNA",
- "Posterior Inferior Parietal Cortex mRNA"
+ "Posterior Inferior Parietal Cortex mRNA mRNA"
],
[
"Posterior Superior Temporal Cortex mRNA",
- "Posterior Superior Temporal Cortex mRNA"
+ "Posterior Superior Temporal Cortex mRNA mRNA"
],
[
"Primary Auditory (A1) Cortex mRNA",
- "Primary Auditory (A1) Cortex mRNA"
+ "Primary Auditory (A1) Cortex mRNA mRNA"
],
[
"Primary Motor (M1) Cortex mRNA",
- "Primary Motor (M1) Cortex mRNA"
+ "Primary Motor (M1) Cortex mRNA mRNA"
],
[
"Primary Somatosensory (S1) Cortex mRNA",
- "Primary Somatosensory (S1) Cortex mRNA"
+ "Primary Somatosensory (S1) Cortex mRNA mRNA"
],
[
"Primary Visual Cortex mRNA",
- "Primary Visual Cortex mRNA"
+ "Primary Visual Cortex mRNA mRNA"
],
[
"Striatum mRNA",
- "Striatum mRNA"
+ "Striatum mRNA mRNA"
],
[
"Ventrolateral Prefrontal Cortex mRNA",
- "Ventrolateral Prefrontal Cortex mRNA"
+ "Ventrolateral Prefrontal Cortex mRNA mRNA"
]
]
},
@@ -2806,23 +2806,23 @@
],
[
"Amygdala mRNA",
- "Amygdala mRNA"
+ "Amygdala mRNA mRNA"
],
[
"Brain mRNA",
- "Brain mRNA"
+ "Brain mRNA mRNA"
],
[
"Hippocampus mRNA",
- "Hippocampus mRNA"
+ "Hippocampus mRNA mRNA"
],
[
"Nucleus Accumbens mRNA",
- "Nucleus Accumbens mRNA"
+ "Nucleus Accumbens mRNA mRNA"
],
[
"Prefrontal Cortex mRNA",
- "Prefrontal Cortex mRNA"
+ "Prefrontal Cortex mRNA mRNA"
]
]
},
@@ -2838,7 +2838,7 @@
],
[
"Mammary Tumors mRNA",
- "Mammary Tumors mRNA"
+ "Mammary Tumors mRNA mRNA"
]
],
"AXBXA": [
@@ -2852,19 +2852,19 @@
],
[
"Bone Femur mRNA",
- "Bone Femur mRNA"
+ "Bone Femur mRNA mRNA"
],
[
"Eye mRNA",
- "Eye mRNA"
+ "Eye mRNA mRNA"
],
[
"Heart mRNA",
- "Heart mRNA"
+ "Heart mRNA mRNA"
],
[
"Liver mRNA",
- "Liver mRNA"
+ "Liver mRNA mRNA"
]
],
"B6BTBRF2": [
@@ -2878,7 +2878,7 @@
],
[
"Liver mRNA",
- "Liver mRNA"
+ "Liver mRNA mRNA"
]
],
"B6D2F2": [
@@ -2892,7 +2892,7 @@
],
[
"Brain mRNA",
- "Brain mRNA"
+ "Brain mRNA mRNA"
]
],
"B6D2F2-PSU": [
@@ -2906,7 +2906,7 @@
],
[
"Muscle mRNA",
- "Muscle mRNA"
+ "Muscle mRNA mRNA"
]
],
"B6D2RI": [
@@ -2920,7 +2920,7 @@
],
[
"Hippocampus mRNA",
- "Hippocampus mRNA"
+ "Hippocampus mRNA mRNA"
]
],
"BDF2-1999": [
@@ -2934,7 +2934,7 @@
],
[
"Liver mRNA",
- "Liver mRNA"
+ "Liver mRNA mRNA"
]
],
"BDF2-2005": [
@@ -2948,7 +2948,7 @@
],
[
"Striatum mRNA",
- "Striatum mRNA"
+ "Striatum mRNA mRNA"
]
],
"BHF2": [
@@ -2962,19 +2962,19 @@
],
[
"Adipose mRNA",
- "Adipose mRNA"
+ "Adipose mRNA mRNA"
],
[
"Brain mRNA",
- "Brain mRNA"
+ "Brain mRNA mRNA"
],
[
"Liver mRNA",
- "Liver mRNA"
+ "Liver mRNA mRNA"
],
[
"Muscle mRNA",
- "Muscle mRNA"
+ "Muscle mRNA mRNA"
]
],
"BHHBF2": [
@@ -2988,19 +2988,19 @@
],
[
"Adipose mRNA",
- "Adipose mRNA"
+ "Adipose mRNA mRNA"
],
[
"Brain mRNA",
- "Brain mRNA"
+ "Brain mRNA mRNA"
],
[
"Liver mRNA",
- "Liver mRNA"
+ "Liver mRNA mRNA"
],
[
"Muscle mRNA",
- "Muscle mRNA"
+ "Muscle mRNA mRNA"
]
],
"BXD": [
@@ -3014,119 +3014,119 @@
],
[
"Adrenal Gland mRNA",
- "Adrenal Gland mRNA"
+ "Adrenal Gland mRNA mRNA"
],
[
"Amygdala mRNA",
- "Amygdala mRNA"
+ "Amygdala mRNA mRNA"
],
[
"Bone Femur mRNA",
- "Bone Femur mRNA"
+ "Bone Femur mRNA mRNA"
],
[
"Brain mRNA",
- "Brain mRNA"
+ "Brain mRNA mRNA"
],
[
"Cartilage mRNA",
- "Cartilage mRNA"
+ "Cartilage mRNA mRNA"
],
[
"Cerebellum mRNA",
- "Cerebellum mRNA"
+ "Cerebellum mRNA mRNA"
],
[
"Eye mRNA",
- "Eye mRNA"
+ "Eye mRNA mRNA"
],
[
"Hematopoietic Cells mRNA",
- "Hematopoietic Cells mRNA"
+ "Hematopoietic Cells mRNA mRNA"
],
[
"Hippocampus mRNA",
- "Hippocampus mRNA"
+ "Hippocampus mRNA mRNA"
],
[
"Hypothalamus mRNA",
- "Hypothalamus mRNA"
+ "Hypothalamus mRNA mRNA"
],
[
"Kidney mRNA",
- "Kidney mRNA"
+ "Kidney mRNA mRNA"
],
[
"Leucocytes mRNA",
- "Leucocytes mRNA"
+ "Leucocytes mRNA mRNA"
],
[
"Liver mRNA",
- "Liver mRNA"
+ "Liver mRNA mRNA"
],
[
"Liver Proteome",
- "Liver Proteome"
+ "Liver Proteome mRNA"
],
[
"Lung mRNA",
- "Lung mRNA"
+ "Lung mRNA mRNA"
],
[
"Midbrain mRNA",
- "Midbrain mRNA"
+ "Midbrain mRNA mRNA"
],
[
"Muscle mRNA",
- "Muscle mRNA"
+ "Muscle mRNA mRNA"
],
[
"Neocortex mRNA",
- "Neocortex mRNA"
+ "Neocortex mRNA mRNA"
],
[
"Nucleus Accumbens mRNA",
- "Nucleus Accumbens mRNA"
+ "Nucleus Accumbens mRNA mRNA"
],
[
"Pituitary Gland mRNA",
- "Pituitary Gland mRNA"
+ "Pituitary Gland mRNA mRNA"
],
[
"Popliteal Lymph Node mRNA",
- "Popliteal Lymph Node mRNA"
+ "Popliteal Lymph Node mRNA mRNA"
],
[
"Prefrontal Cortex mRNA",
- "Prefrontal Cortex mRNA"
+ "Prefrontal Cortex mRNA mRNA"
],
[
"Retina mRNA",
- "Retina mRNA"
+ "Retina mRNA mRNA"
],
[
"Spleen mRNA",
- "Spleen mRNA"
+ "Spleen mRNA mRNA"
],
[
"Striatum mRNA",
- "Striatum mRNA"
+ "Striatum mRNA mRNA"
],
[
"T Cell (helper) mRNA",
- "T Cell (helper) mRNA"
+ "T Cell (helper) mRNA mRNA"
],
[
"T Cell (regulatory) mRNA",
- "T Cell (regulatory) mRNA"
+ "T Cell (regulatory) mRNA mRNA"
],
[
"Thymus mRNA",
- "Thymus mRNA"
+ "Thymus mRNA mRNA"
],
[
"Ventral Tegmental Area mRNA",
- "Ventral Tegmental Area mRNA"
+ "Ventral Tegmental Area mRNA mRNA"
]
],
"BXH": [
@@ -3140,15 +3140,15 @@
],
[
"Bone Femur mRNA",
- "Bone Femur mRNA"
+ "Bone Femur mRNA mRNA"
],
[
"Cartilage mRNA",
- "Cartilage mRNA"
+ "Cartilage mRNA mRNA"
],
[
"Liver mRNA",
- "Liver mRNA"
+ "Liver mRNA mRNA"
]
],
"C57BL-6JxC57BL-6NJF2": [
@@ -3172,19 +3172,19 @@
],
[
"Adipose mRNA",
- "Adipose mRNA"
+ "Adipose mRNA mRNA"
],
[
"Brain mRNA",
- "Brain mRNA"
+ "Brain mRNA mRNA"
],
[
"Liver mRNA",
- "Liver mRNA"
+ "Liver mRNA mRNA"
],
[
"Muscle mRNA",
- "Muscle mRNA"
+ "Muscle mRNA mRNA"
]
],
"CXB": [
@@ -3198,11 +3198,11 @@
],
[
"Hippocampus mRNA",
- "Hippocampus mRNA"
+ "Hippocampus mRNA mRNA"
],
[
"Spleen mRNA",
- "Spleen mRNA"
+ "Spleen mRNA mRNA"
]
],
"HS": [
@@ -3216,15 +3216,15 @@
],
[
"Hippocampus mRNA",
- "Hippocampus mRNA"
+ "Hippocampus mRNA mRNA"
],
[
"Liver mRNA",
- "Liver mRNA"
+ "Liver mRNA mRNA"
],
[
"Lung mRNA",
- "Lung mRNA"
+ "Lung mRNA mRNA"
]
],
"HS-CC": [
@@ -3238,7 +3238,7 @@
],
[
"Striatum mRNA",
- "Striatum mRNA"
+ "Striatum mRNA mRNA"
]
],
"LXS": [
@@ -3252,11 +3252,11 @@
],
[
"Hippocampus mRNA",
- "Hippocampus mRNA"
+ "Hippocampus mRNA mRNA"
],
[
"Prefrontal Cortex mRNA",
- "Prefrontal Cortex mRNA"
+ "Prefrontal Cortex mRNA mRNA"
]
],
"MDP": [
@@ -3270,19 +3270,19 @@
],
[
"Bone Femur mRNA",
- "Bone Femur mRNA"
+ "Bone Femur mRNA mRNA"
],
[
"Dorsal Root Ganglia mRNA",
- "Dorsal Root Ganglia mRNA"
+ "Dorsal Root Ganglia mRNA mRNA"
],
[
"Hippocampus mRNA",
- "Hippocampus mRNA"
+ "Hippocampus mRNA mRNA"
],
[
"Liver mRNA",
- "Liver mRNA"
+ "Liver mRNA mRNA"
]
],
"NZBXFVB-N2": [
@@ -3296,7 +3296,7 @@
],
[
"Mammary Tumors mRNA",
- "Mammary Tumors mRNA"
+ "Mammary Tumors mRNA mRNA"
]
],
"SOTNOT-OHSU": [
@@ -3320,7 +3320,7 @@
],
[
"Anterior Cingulate Cortex mRNA",
- "Anterior Cingulate Cortex mRNA"
+ "Anterior Cingulate Cortex mRNA mRNA"
]
]
},
@@ -3346,27 +3346,27 @@
],
[
"Adrenal Gland mRNA",
- "Adrenal Gland mRNA"
+ "Adrenal Gland mRNA mRNA"
],
[
"Heart mRNA",
- "Heart mRNA"
+ "Heart mRNA mRNA"
],
[
"Hippocampus mRNA",
- "Hippocampus mRNA"
+ "Hippocampus mRNA mRNA"
],
[
"Kidney mRNA",
- "Kidney mRNA"
+ "Kidney mRNA mRNA"
],
[
"Liver mRNA",
- "Liver mRNA"
+ "Liver mRNA mRNA"
],
[
"Peritoneal Fat mRNA",
- "Peritoneal Fat mRNA"
+ "Peritoneal Fat mRNA mRNA"
]
],
"SRxSHRSPF2": [
@@ -3380,7 +3380,7 @@
],
[
"Eye mRNA",
- "Eye mRNA"
+ "Eye mRNA mRNA"
]
]
},